Pregenerated sensors for PCP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000004630Ensembl transcript IDs: ENSMUST00000004749.7, ENSMUST00000128566.8, ENSMUST00000133459.8, ENSMUST00000136105.8, ENSMUST00000142431.8, ENSMUST00000144977.2
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCTACCTGGAGTTCCAGGGCACTGAAAGCTCCCAGGGCAGGAGATTaGCTTCTGGCCTCCACCTGCGTGTGCACACGTGTGCCCGGAGCT | + |
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Preference number: 1 (lower is better) Translates to: STWSSRALKAPRAGD*LLASTCVCTRVPGA Trigger: AGCTCCGGGCACACGTGTGCACACGCAGGTGGAGGCCAGAAGTCAATCTCCTGCCCTGGGAGCTTTCAGTGCCCTGGAACTCCAGGTAGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128566.8 |
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| 3UTR CAA 90 bp | CCTGCGGAAGCTGAGTGCAGCAGGATCCTGAGGGGTGAGCAGGGGTaGAGGGCTGAGGGTCCCAGGTCGTTTCTGCATTCCATCCTGGGG | + |
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Preference number: 2 (lower is better) Translates to: PAEAECSRILRGEQG*RAEGPRSFLHSILG Trigger: CCCCAGGATGGAATGCAGAAACGACCTGGGACCCTCAGCCCTCAACCCCTGCTCACCCCTCAGGATCCTGCTGCACTCAGCTTCCGCAGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128566.8 |
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| 3UTR-3UTR TCA 90 bp | GGGGCCAGTGGGAGGCCCAGGATGGCTAGAACTCTCAAGGAGCTTGTGTCTGGGGGAGTTCCAGGGCACTaGAAGCTCCCAGGGCAGGAG | + |
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Preference number: 2 (lower is better) Translates to: GASGRPRMARTLKELVSGGVPGH*KLPGQE Trigger: CTCCTGCCCTGGGAGCTTTCAGTGCCCTGGAACTCC...CCCAGACACAAGCTCCTTGAGAGTTCTAGCCATCCTGGGCCTCCCACTGGCCCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000128566.8 |
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| 3UTR CAA 90 bp | ATCTACCTGGAGTTCCAGGGCACTGAAAGCTCCCAGGGCAGGAGATaGACTTCTGGCCTCCACCTGCGTGTGCACACGTGTGCCCGGAGC | + |
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Preference number: 2 (lower is better) Translates to: IYLEFQGTESSQGRR*TSGLHLRVHTCARS Trigger: GCTCCGGGCACACGTGTGCACACGCAGGTGGAGGCCAGAAGTCAATCTCCTGCCCTGGGAGCTTTCAGTGCCCTGGAACTCCAGGTAGAT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128566.8 |
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| 3UTR-3UTR TCA 90 bp | GTCGTTTCTGCATTCCATCCTGGGGATGAAGAAGGGTCAGACGGAGGGAGGGGACCCAGGGCAGGAGATTaGCTTCTGGCCTCCACCTGC | + |
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Preference number: 2 (lower is better) Translates to: VVSAFHPGDEEGSDGGRGPRAGD*LLASTC Trigger: GCAGGTGGAGGCCAGAAGTCAATCTCCTGCCCTGGG...TCCCCTCCCTCCGTCTGACCCTTCTTCATCCCCAGGATGGAATGCAGAAACGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128566.8 |
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| 3UTR-3UTR CCA 90 bp | GGGGCCAGTGGGAGGCCCAGGATGGCTAGAACTCTCAAGGAGCTTGTGTCTGGGAGTTTAAGCCAGGTGTaGGTTTATGCACTTGTAATC | + |
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Preference number: 2 (lower is better) Translates to: GASGRPRMARTLKELVSGSLSQV*VYALVI Trigger: GATTACAAGTGCATAAACCCACACCTGGCTTAAACT...CCCAGACACAAGCTCCTTGAGAGTTCTAGCCATCCTGGGCCTCCCACTGGCCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128566.8 |
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| 3UTR CAA 90 bp | ATGTATGCTAATGTACACAGACATAGGGCTGGGGCTGGAGCTCAGTaGATAGAGACTGCATCAAAGCCCTGGGTTCTATCCCTACCCACA | + |
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Preference number: 2 (lower is better) Translates to: MYANVHRHRAGAGAQ*IETASKPWVLSLPT Trigger: TGTGGGTAGGGATAGAACCCAGGGCTTTGATGCAGTCTCTATCAACTGAGCTCCAGCCCCAGCCCTATGTCTGTGTACATTAGCATACAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128566.8 |
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| 3UTR-3UTR TCA 90 bp | GAGGGTCCCAGGTCGTTTCTGCATTCCATCCTGGGGATGAAGAAGGGTCAGACGAACAAACAGTTGAGTTaGGAAGATAGCTCAGTCATT | + |
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Preference number: 2 (lower is better) Translates to: EGPRSFLHSILGMKKGQTNKQLS*EDSSVI Trigger: AATGACTGAGCTATCTTCTCAACTCAACTGTTTGTT...CGTCTGACCCTTCTTCATCCCCAGGATGGAATGCAGAAACGACCTGGGACCCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128566.8 |
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| 3UTR-3UTR GCA 90 bp | CCTGTCTCAAAAACAATAAAGCAAAACACTCCCAAACAGAAGCCCTACTCTTCAGGGTATGCATTCATATaGCTTCCAGGAAAACTGCCT | + |
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Preference number: 2 (lower is better) Translates to: PVSKTIKQNTPKQKPYSSGYAFI*LPGKLP Trigger: AGGCAGTTTTCCTGGAAGGCATATGAATGCATACCC...TGAAGAGTAGGGCTTCTGTTTGGGAGTGTTTTGCTTTATTGTTTTTGAGACAGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000128566.8 |
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| 3UTR TCA 72 bp | AGTTCCAGGGCACTGAAAGCTCCCAGGGCAGGAGATTaGCTTCTGGCCTCCACCTGCGTGTGCACACGTGTG | + |
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Preference number: 3 (lower is better) Translates to: SSRALKAPRAGD*LLASTCVCTRV Trigger: CACACGTGTGCACACGCAGGTGGAGGCCAGAAGTCAATCTCCTGCCCTGGGAGCTTTCAGTGCCCTGGAACT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128566.8 |
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| 3UTR-3UTR CAA 90 bp | GTCGTTTCTGCATTCCATCCTGGGGATGAAGAAGGGTCAGACGGAGGGAGGGGATCCCAGGGCAGGAGATaGACTTCTGGCCTCCACCTG | + |
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Preference number: 3 (lower is better) Translates to: VVSAFHPGDEEGSDGGRGSQGRR*TSGLHL Trigger: CAGGTGGAGGCCAGAAGTCAATCTCCTGCCCTGGGA...TCCCCTCCCTCCGTCTGACCCTTCTTCATCCCCAGGATGGAATGCAGAAACGAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128566.8 |
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| 3UTR TCA 72 bp | AGGGTCCCAGGTCGTTTCTGCATTCCATCCTGGGGATaGAGAAGGGTCAGACGGAGGGAGGGGACCAAGGAA | + |
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Preference number: 3 (lower is better) Translates to: RVPGRFCIPSWG*RRVRRREGTKE Trigger: TTCCTTGGTCCCCTCCCTCCGTCTGACCCTTCTTCATCCCCAGGATGGAATGCAGAAACGACCTGGGACCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128566.8 |
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| 3UTR-3UTR CAA 90 bp | AGAAGGGTCAGACGGAGGGAGGGGACCAAGGAAAGTGCAAGTCAGAAGTGCCTCTTAGGGTGGTGGTATTaGGTCAGACATTGGCCTGTT | + |
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Preference number: 3 (lower is better) Translates to: RRVRRREGTKESASQKCLLGWWY*VRHWPV Trigger: AACAGGCCAATGTCTGACCAAATACCACCACCCTAA...GAGGCACTTCTGACTTGCACTTTCCTTGGTCCCCTCCCTCCGTCTGACCCTTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128566.8 |
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| 3UTR-3UTR CAA 90 bp | GTCGTTTCTGCATTCCATCCTGGGGATGAAGAAGGGTCAGACGGAGGGAGGGGACAGTCATTGAAATCCTaGCTATGCTCATTTGAAGAC | + |
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Preference number: 3 (lower is better) Translates to: VVSAFHPGDEEGSDGGRGQSLKS*LCSFED Trigger: GTCTTCAAATGAGCATAGCAAGGATTTCAATGACTG...TCCCCTCCCTCCGTCTGACCCTTCTTCATCCCCAGGATGGAATGCAGAAACGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128566.8 |
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| 3UTR TCA 72 bp | GGAACTGTAATTTCCAGCCATAGTTCTGCACTAGCATaGGTCCTGCCACCTGACCTTAAGCCCATAGCACTT | + |
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Preference number: 3 (lower is better) Translates to: GTVISSHSSALA*VLPPDLKPIAL Trigger: AAGTGCTATGGGCTTAAGGTCAGGTGGCAGGACTCATGCTAGTGCAGAACTATGGCTGGAAATTACAGTTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128566.8 |
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| 3UTR GCA 72 bp | TTATCCCAGAACCCAGGATGCACATGTAGGAGAACATaGCAGCCAGAGCTACATGAAACCCTGTCTCAAAAA | + |
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Preference number: 3 (lower is better) Translates to: LSQNPGCTCRRT*QPELHETLSQK Trigger: TTTTTGAGACAGGGTTTCATGTAGCTCTGGCTGGCATGTTCTCCTACATGTGCATCCTGGGTTCTGGGATAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128566.8 |
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| 3UTR TCA 72 bp | AGCAAAACACTCCCAAACAGAAGCCCTACTCTTCATTaGTTTATAGGGGTATGCATTCATATGCCTTCCAGG | + |
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Preference number: 3 (lower is better) Translates to: SKTLPNRSPTLH*FIGVCIHMPSR Trigger: CCTGGAAGGCATATGAATGCATACCCCTATAAATCAATGAAGAGTAGGGCTTCTGTTTGGGAGTGTTTTGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128566.8 |
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| 3UTR TCA 72 bp | GATAGCTCAGTCATTGAAATCCTTGCTATGCTCATTTaGAGACCTGAGTTTAAGCCAGGTGTGGGTTTATGC | + |
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Preference number: 3 (lower is better) Translates to: DSSVIEILAMLI*RPEFKPGVGLC Trigger: GCATAAACCCACACCTGGCTTAAACTCAGGTCTTCAAATGAGCATAGCAAGGATTTCAATGACTGAGCTATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128566.8 |
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| 3UTR GCA 72 bp | GTTGAGAAGATAGCTCAGTCATTGAAATCCTTGCTATaGTCATTTGAAGACCTGAGTTTAAGCCAGGTGTGG | + |
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Preference number: 3 (lower is better) Translates to: VEKIAQSLKSLL*SFEDLSLSQVW Trigger: CCACACCTGGCTTAAACTCAGGTCTTCAAATGAGCATAGCAAGGATTTCAATGACTGAGCTATCTTCTCAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128566.8 |
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| CDS-3UTR GCA 90 bp | CTGGGGGCTGCTGTTCCTGCGGAAGCTGAGTGCAGCAGGATCCTGAGGGGTGAGTGGCCTGGCCCAGCCTaGAAGGAACAGCGCTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: LGAAVPAEAECSRILRGEWPGPA*KEQRCS Trigger: GGAGCAGCGCTGTTCCTTGCAGGCTGGGCCAGGCCA...CTCACCCCTCAGGATCCTGCTGCACTCAGCTTCCGCAGGAACAGCAGCCCCCAG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000128566.8 ENSMUST00000144977.2 |
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| CDS-3UTR CCA 90 bp | CTGGGGGCTGCTGTTCCTGCGGAAGCTGAGTGCAGCAGGATCCTGAGGGGTGAGGCCACCCTGGCTTTCTaGGTTCTGGCCTGGCCCAGC | + |
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Preference number: 4 (lower is better) Translates to: LGAAVPAEAECSRILRGEATLAF*VLAWPS Trigger: GCTGGGCCAGGCCAGAACCCAGAAAGCCAGGGTGGC...CTCACCCCTCAGGATCCTGCTGCACTCAGCTTCCGCAGGAACAGCAGCCCCCAG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000128566.8 ENSMUST00000144977.2 |
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| CDS-3UTR CCA 90 bp | GCTGTTCCTGCGGAAGCTGAGTGCAGCAGGATCCTGAGGGGTGAGCAGGGGTTGGAGATTGTCCATCTCTaGAGCAGGGCCACCCTGGCT | + |
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Preference number: 4 (lower is better) Translates to: AVPAEAECSRILRGEQGLEIVHL*SRATLA Trigger: AGCCAGGGTGGCCCTGCTCCAGAGATGGACAATCTC...CAACCCCTGCTCACCCCTCAGGATCCTGCTGCACTCAGCTTCCGCAGGAACAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000128566.8 ENSMUST00000144977.2 |
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| CDS-3UTR CCA 90 bp | GGGGCCAGTGGGAGGCCCAGGATGGCTAGAACTCTCAAGGAGCTTGTGTCTGGGCGATCGCCCTGCACGTaGGTCAGCAGGTTGAAGAAG | + |
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Preference number: 4 (lower is better) Translates to: GASGRPRMARTLKELVSGRSPCT*VSRLKK Trigger: CTTCTTCAACCTGCTGACCCACGTGCAGGGCGATCG...CCCAGACACAAGCTCCTTGAGAGTTCTAGCCATCCTGGGCCTCCCACTGGCCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000128566.8 ENSMUST00000144977.2 |
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| CDS-3UTR CCA 90 bp | GCTGCTGTTCCTGCGGAAGCTGAGTGCAGCAGGATCCTGAGGGGTGAGCAGGGGTTGGGGCCGATAGGTTaGAAGCCAGGCAGGGAATTA | + |
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Preference number: 4 (lower is better) Translates to: AAVPAEAECSRILRGEQGLGPIG*KPGREL Trigger: TAATTCCCTGCCTGGCTTCCAACCTATCGGCCCCAA...CCCCTGCTCACCCCTCAGGATCCTGCTGCACTCAGCTTCCGCAGGAACAGCAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000128566.8 ENSMUST00000144977.2 |
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| CDS-3UTR CCA 90 bp | GAGGGTCCCAGGTCGTTTCTGCATTCCATCCTGGGGATGAAGAAGGGTCAGACGTGGCTTTCTGGGTTCTaGCCTGGCCCAGCCTGCAAG | + |
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Preference number: 4 (lower is better) Translates to: EGPRSFLHSILGMKKGQTWLSGF*PGPACK Trigger: CTTGCAGGCTGGGCCAGGCCAGAACCCAGAAAGCCA...CGTCTGACCCTTCTTCATCCCCAGGATGGAATGCAGAAACGACCTGGGACCCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128566.8 |
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| CDS-3UTR CCA 90 bp | GAAGCTGAGTGCAGCAGGATCCTGAGGGGTGAGCAGGGGTTGAGGGCTGAGGGTTTGAAGAAGCCTTCCTaGTCCGGTGAACCTGCCTTG | + |
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Preference number: 4 (lower is better) Translates to: EAECSRILRGEQGLRAEGLKKPS*SGEPAL Trigger: CAAGGCAGGTTCACCGGACCAGGAAGGCTTCTTCAA...ACCCTCAGCCCTCAACCCCTGCTCACCCCTCAGGATCCTGCTGCACTCAGCTTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000128566.8 ENSMUST00000144977.2 |
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| CDS-3UTR CCA 90 bp | AGAAGGGTCAGACGGAGGGAGGGGACCAAGGAAAGTGCAAGTCAGAAGTGCCTCGAGATTGTCCATCTCTaGAGCAGGGCCACCCTGGCT | + |
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Preference number: 4 (lower is better) Translates to: RRVRRREGTKESASQKCLEIVHL*SRATLA Trigger: AGCCAGGGTGGCCCTGCTCCAGAGATGGACAATCTC...GAGGCACTTCTGACTTGCACTTTCCTTGGTCCCCTCCCTCCGTCTGACCCTTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128566.8 |
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| CDS-3UTR CCA 90 bp | AGAAGGGTCAGACGGAGGGAGGGGACCAAGGAAAGTGCAAGTCAGAAGTGCCTCTTAACTGTTACACGCTaGTCGTCCATGCGGCGGCCC | + |
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Preference number: 4 (lower is better) Translates to: RRVRRREGTKESASQKCLLTVTR*SSMRRP Trigger: GGGCCGCCGCATGGACGACCAGCGTGTAACAGTTAA...GAGGCACTTCTGACTTGCACTTTCCTTGGTCCCCTCCCTCCGTCTGACCCTTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128566.8 |
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| CDS-3UTR CCA 90 bp | GTCGTTTCTGCATTCCATCCTGGGGATGAAGAAGGGTCAGACGGAGGGAGGGGATTGGGGCCGATAGGTTaGAAGCCAGGCAGGGAATTA | + |
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Preference number: 4 (lower is better) Translates to: VVSAFHPGDEEGSDGGRGLGPIG*KPGREL Trigger: TAATTCCCTGCCTGGCTTCCAACCTATCGGCCCCAA...TCCCCTCCCTCCGTCTGACCCTTCTTCATCCCCAGGATGGAATGCAGAAACGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000128566.8 |
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| CDS-3UTR CCA 90 bp | CTGAGGGTCCCAGGTCGTTTCTGCATTCCATCCTGTAATCCCAGTACTCAAGAATGGCTTTCTGGGTTCTaGCCTGGCCCAGCCTGCAAG | + |
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Preference number: 4 (lower is better) Translates to: LRVPGRFCIPSCNPSTQEWLSGF*PGPACK Trigger: CTTGCAGGCTGGGCCAGGCCAGAACCCAGAAAGCCA...TTCTTGAGTACTGGGATTACAGGATGGAATGCAGAAACGACCTGGGACCCTCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144977.2 |
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| CDS-3UTR CCA 90 bp | GAGGGTCCCAGGTCGTTTCTGCATTCCATCCTGGGGATGAAGAAGGGTCAGACGGTCTCACAGGTAATCTaGACATCACCTACCTTGGGG | + |
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Preference number: 4 (lower is better) Translates to: EGPRSFLHSILGMKKGQTVSQVI*TSPTLG Trigger: CCCCAAGGTAGGTGATGTCCAGATTACCTGTGAGAC...CGTCTGACCCTTCTTCATCCCCAGGATGGAATGCAGAAACGACCTGGGACCCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128566.8 |
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| CDS-3UTR CCA 90 bp | CAGGTCGTTTCTGCATTCCATCCTGTAATCCCAGTACTCAAGAAACAGGCAGGATCCATGCGGCGGCCCTaGGTGTTGACCAGCATATCC | + |
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Preference number: 4 (lower is better) Translates to: QVVSAFHPVIPVLKKQAGSMRRP*VLTSIS Trigger: GGATATGCTGGTCAACACCCAGGGCCGCCGCATGGA...TCCTGCCTGTTTCTTGAGTACTGGGATTACAGGATGGAATGCAGAAACGACCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144977.2 |
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| CDS-3UTR CCA 90 bp | CTGAGGGTCCCAGGTCGTTTCTGCATTCCATCCTGTAATCCCAGTACTCAAGAATTAACTGTTACACGCTaGTCGTCCATGCGGCGGCCC | + |
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Preference number: 4 (lower is better) Translates to: LRVPGRFCIPSCNPSTQELTVTR*SSMRRP Trigger: GGGCCGCCGCATGGACGACCAGCGTGTAACAGTTAA...TTCTTGAGTACTGGGATTACAGGATGGAATGCAGAAACGACCTGGGACCCTCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144977.2 |
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| CDS-3UTR CCA 90 bp | CAGGTCGTTTCTGCATTCCATCCTGTAATCCCAGTACTCAAGAAACAGGCAGGACGATCGCCCTGCACGTaGGTCAGCAGGTTGAAGAAG | + |
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Preference number: 4 (lower is better) Translates to: QVVSAFHPVIPVLKKQAGRSPCT*VSRLKK Trigger: CTTCTTCAACCTGCTGACCCACGTGCAGGGCGATCG...TCCTGCCTGTTTCTTGAGTACTGGGATTACAGGATGGAATGCAGAAACGACCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144977.2 |
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| CDS-3UTR CCA 90 bp | CCTGTCTCAAAAACAATAAAGCAAAACACTCCCAAACAGAAGCCCTACTCTTCATCCATGCGGCGGCCCTaGGTGTTGACCAGCATATCC | + |
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Preference number: 4 (lower is better) Translates to: PVSKTIKQNTPKQKPYSSSMRRP*VLTSIS Trigger: GGATATGCTGGTCAACACCCAGGGCCGCCGCATGGA...TGAAGAGTAGGGCTTCTGTTTGGGAGTGTTTTGCTTTATTGTTTTTGAGACAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000128566.8 |
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| CDS-3UTR CCA 90 bp | TCTCCCAAATATACAGATGTTGGAGCAGGAACTGTAATTTCCAGCCATAGTTCTTTGAAGAAGCCTTCCTaGTCCGGTGAACCTGCCTTG | + |
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Preference number: 4 (lower is better) Translates to: SPKYTDVGAGTVISSHSSLKKPS*SGEPAL Trigger: CAAGGCAGGTTCACCGGACCAGGAAGGCTTCTTCAA...AGAACTATGGCTGGAAATTACAGTTCCTGCTCCAACATCTGTATATTTGGGAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128566.8 |
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| 3UTR CAA 72 bp | AAGCAAAACACTCCCAAACAGAAGCCCTACTCTTCATaGATTTATAGGGGTATGCATTCATATGCCTTCCAG | + |
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Preference number: 4 (lower is better) Translates to: KQNTPKQKPYSS*IYRGMHSYAFQ Trigger: CTGGAAGGCATATGAATGCATACCCCTATAAATCAATGAAGAGTAGGGCTTCTGTTTGGGAGTGTTTTGCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128566.8 |
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| CDS GCA 90 bp | GGCCCAGCCTGCAAGGAACAGCGCTGCTCCTCCATCCGATCGCCCTaGACGTGGGTCAGCAGGTTGAAGAAGCCTTCCTGGTCCGGTGAA | + |
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Preference number: 5 (lower is better) Translates to: GPACKEQRCSSIRSP*TWVSRLKKPSWSGE Trigger: TTCACCGGACCAGGAAGGCTTCTTCAACCTGCTGACCCACGTGCAGGGCGATCGGATGGAGGAGCAGCGCTGTTCCTTGCAGGCTGGGCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000128566.8 ENSMUST00000133459.8 ENSMUST00000136105.8 ENSMUST00000144977.2 |
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| CDS GCA 90 bp | TGGCTTTCTGGGTTCTGGCCTGGCCCAGCCTGCAAGGAACAGCGCTaGTCCTCCATCCGATCGCCCTGCACGTGGGTCAGCAGGTTGAAG | + |
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Preference number: 5 (lower is better) Translates to: WLSGFWPGPACKEQR*SSIRSPCTWVSRLK Trigger: CTTCAACCTGCTGACCCACGTGCAGGGCGATCGGATGGAGGAGCAGCGCTGTTCCTTGCAGGCTGGGCCAGGCCAGAACCCAGAAAGCCA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000128566.8 ENSMUST00000133459.8 ENSMUST00000136105.8 ENSMUST00000144977.2 |
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| CDS CCA 90 bp | GCCTGCAAGGAACAGCGCTGCTCCTCCATCCGATCGCCCTGCACGTaGGTCAGCAGGTTGAAGAAGCCTTCCTGGTCCGGTGAACCTGCC | + |
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Preference number: 5 (lower is better) Translates to: ACKEQRCSSIRSPCT*VSRLKKPSWSGEPA Trigger: GGCAGGTTCACCGGACCAGGAAGGCTTCTTCAACCTGCTGACCCACGTGCAGGGCGATCGGATGGAGGAGCAGCGCTGTTCCTTGCAGGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000128566.8 ENSMUST00000133459.8 ENSMUST00000136105.8 ENSMUST00000144977.2 |
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| CDS-3UTR CAA 90 bp | GAAGCTGAGTGCAGCAGGATCCTGAGGGGTGAGCAGGGGTTGAGGGCTGAGGGTCGGCGGCCCTGGGTGTaGACCAGCATATCCATGAGA | + |
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Preference number: 5 (lower is better) Translates to: EAECSRILRGEQGLRAEGRRPWV*TSISMR Trigger: TCTCATGGATATGCTGGTCAACACCCAGGGCCGCCG...ACCCTCAGCCCTCAACCCCTGCTCACCCCTCAGGATCCTGCTGCACTCAGCTTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000128566.8 ENSMUST00000144977.2 |
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| CDS-3UTR CAA 90 bp | GGGGCCAGTGGGAGGCCCAGGATGGCTAGAACTCTCAAGGAGCTTGTGTCTGGGACGTGGGTCAGCAGGTaGAAGAAGCCTTCCTGGTCC | + |
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Preference number: 5 (lower is better) Translates to: GASGRPRMARTLKELVSGTWVSR*KKPSWS Trigger: GGACCAGGAAGGCTTCTTCAACCTGCTGACCCACGT...CCCAGACACAAGCTCCTTGAGAGTTCTAGCCATCCTGGGCCTCCCACTGGCCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000128566.8 ENSMUST00000144977.2 |
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| CDS TCA 90 bp | AGCGCTGCTCCTCCATCCGATCGCCCTGCACGTGGGTCAGCAGGTTaGAGAAGCCTTCCTGGTCCGGTGAACCTGCCTTGTCTAGAAGGT | + |
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Preference number: 5 (lower is better) Translates to: SAAPPSDRPARGSAG*RSLPGPVNLPCLEG Trigger: ACCTTCTAGACAAGGCAGGTTCACCGGACCAGGAAGGCTTCTTCAACCTGCTGACCCACGTGCAGGGCGATCGGATGGAGGAGCAGCGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000128566.8 ENSMUST00000136105.8 ENSMUST00000144977.2 |
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| CDS CCA 90 bp | GGGCCGATAGGTTGGAAGCCAGGCAGGGAATTAACTGTTACACGCTaGTCGTCCATGCGGCGGCCCTGGGTGTTGACCAGCATATCCATG | + |
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Preference number: 5 (lower is better) Translates to: GPIGWKPGRELTVTR*SSMRRPWVLTSISM Trigger: CATGGATATGCTGGTCAACACCCAGGGCCGCCGCATGGACGACCAGCGTGTAACAGTTAATTCCCTGCCTGGCTTCCAACCTATCGGCCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000004749.7 ENSMUST00000128566.8 ENSMUST00000133459.8 ENSMUST00000136105.8 ENSMUST00000142431.8 ENSMUST00000144977.2 |
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| CDS CCA 90 bp | ATCCGATCGCCCTGCACGTGGGTCAGCAGGTTGAAGAAGCCTTCCTaGTCCGGTGAACCTGCCTTGTCTAGAAGGTCTGAGCCTCCCTCT | + |
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Preference number: 5 (lower is better) Translates to: IRSPCTWVSRLKKPS*SGEPALSRRSEPPS Trigger: AGAGGGAGGCTCAGACCTTCTAGACAAGGCAGGTTCACCGGACCAGGAAGGCTTCTTCAACCTGCTGACCCACGTGCAGGGCGATCGGAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000128566.8 ENSMUST00000136105.8 ENSMUST00000144977.2 |
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| CDS-3UTR CAA 90 bp | GAGGGTCCCAGGTCGTTTCTGCATTCCATCCTGGGGATGAAGAAGGGTCAGACGACGTGGGTCAGCAGGTaGAAGAAGCCTTCCTGGTCC | + |
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Preference number: 5 (lower is better) Translates to: EGPRSFLHSILGMKKGQTTWVSR*KKPSWS Trigger: GGACCAGGAAGGCTTCTTCAACCTGCTGACCCACGT...CGTCTGACCCTTCTTCATCCCCAGGATGGAATGCAGAAACGACCTGGGACCCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128566.8 |
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| CDS-3UTR CAA 90 bp | AGAAGGGTCAGACGGAGGGAGGGGACCAAGGAAAGTGCAAGTCAGAAGTGCCTCTCCGGTGAACCTGCCTaGTCTAGAAGGTCTGAGCCT | + |
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Preference number: 5 (lower is better) Translates to: RRVRRREGTKESASQKCLSGEPA*SRRSEP Trigger: AGGCTCAGACCTTCTAGACAAGGCAGGTTCACCGGA...GAGGCACTTCTGACTTGCACTTTCCTTGGTCCCCTCCCTCCGTCTGACCCTTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128566.8 |
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| CDS CCA 90 bp | GGCAGGGAATTAACTGTTACACGCTGGTCGTCCATGCGGCGGCCCTaGGTGTTGACCAGCATATCCATGAGATTGTCCATCTCTGGAGCA | + |
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Preference number: 5 (lower is better) Translates to: GRELTVTRWSSMRRP*VLTSISMRLSISGA Trigger: TGCTCCAGAGATGGACAATCTCATGGATATGCTGGTCAACACCCAGGGCCGCCGCATGGACGACCAGCGTGTAACAGTTAATTCCCTGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000004749.7 ENSMUST00000128566.8 ENSMUST00000133459.8 ENSMUST00000136105.8 ENSMUST00000142431.8 ENSMUST00000144977.2 |
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| CDS CCA 90 bp | AGGGTCCCAGGTCGTTTCTGCATTCCATCCTTGGGGCCGATAGGTTaGAAGCCAGGCAGGGAATTAACTGTTACACGCTGGTCGTCCATG | + |
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Preference number: 5 (lower is better) Translates to: RVPGRFCIPSLGPIG*KPGRELTVTRWSSM Trigger: CATGGACGACCAGCGTGTAACAGTTAATTCCCTGCCTGGCTTCCAACCTATCGGCCCCAAGGATGGAATGCAGAAACGACCTGGGACCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000004749.7 ENSMUST00000133459.8 ENSMUST00000136105.8 ENSMUST00000142431.8 |
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| CDS-3UTR CAA 90 bp | CAGGTCGTTTCTGCATTCCATCCTGTAATCCCAGTACTCAAGAAACAGGCAGGACTTGGGGCCGATAGGTaGGAAGCCAGGCAGGGAATT | + |
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Preference number: 5 (lower is better) Translates to: QVVSAFHPVIPVLKKQAGLGADR*EARQGI Trigger: AATTCCCTGCCTGGCTTCCAACCTATCGGCCCCAAG...TCCTGCCTGTTTCTTGAGTACTGGGATTACAGGATGGAATGCAGAAACGACCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144977.2 |
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| CDS-3UTR CAA 90 bp | CCTGTCTCAAAAACAATAAAGCAAAACACTCCCAAACAGAAGCCCTACTCTTCACGGCGGCCCTGGGTGTaGACCAGCATATCCATGAGA | + |
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Preference number: 5 (lower is better) Translates to: PVSKTIKQNTPKQKPYSSRRPWV*TSISMR Trigger: TCTCATGGATATGCTGGTCAACACCCAGGGCCGCCG...TGAAGAGTAGGGCTTCTGTTTGGGAGTGTTTTGCTTTATTGTTTTTGAGACAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000128566.8 |
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| CDS-3UTR CAA 90 bp | AAGCCCTACTCTTCATTGATTTATAGGGGTATGCATTCATATGCCTTCCAGGAACTTGGGGCCGATAGGTaGGAAGCCAGGCAGGGAATT | + |
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Preference number: 5 (lower is better) Translates to: KPYSSLIYRGMHSYAFQELGADR*EARQGI Trigger: AATTCCCTGCCTGGCTTCCAACCTATCGGCCCCAAG...TTCCTGGAAGGCATATGAATGCATACCCCTATAAATCAATGAAGAGTAGGGCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128566.8 |
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| CDS GCA 72 bp | GGGTTCTGGCCTGGCCCAGCCTGCAAGGAACAGCGCTaGTCCTCCATCCGATCGCCCTGCACGTGGGTCAGC | + |
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Preference number: 6 (lower is better) Translates to: GFWPGPACKEQR*SSIRSPCTWVS Trigger: GCTGACCCACGTGCAGGGCGATCGGATGGAGGAGCAGCGCTGTTCCTTGCAGGCTGGGCCAGGCCAGAACCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000128566.8 ENSMUST00000133459.8 ENSMUST00000136105.8 ENSMUST00000144977.2 |
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| CDS CAA 90 bp | CCTGCGGAAGCTGAGTGCAGCAGGATCCTGAGGGGTGAGCAGGGGTaGAGGGCTGAGGGTCCCAGGTCGTTTCTGCATTCCATCCTTGGG | + |
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Preference number: 6 (lower is better) Translates to: PAEAECSRILRGEQG*RAEGPRSFLHSILG Trigger: CCCAAGGATGGAATGCAGAAACGACCTGGGACCCTCAGCCCTCAACCCCTGCTCACCCCTCAGGATCCTGCTGCACTCAGCTTCCGCAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000004749.7 ENSMUST00000133459.8 ENSMUST00000136105.8 ENSMUST00000142431.8 |
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| CDS CCA 72 bp | GAACAGCGCTGCTCCTCCATCCGATCGCCCTGCACGTaGGTCAGCAGGTTGAAGAAGCCTTCCTGGTCCGGT | + |
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Preference number: 6 (lower is better) Translates to: EQRCSSIRSPCT*VSRLKKPSWSG Trigger: ACCGGACCAGGAAGGCTTCTTCAACCTGCTGACCCACGTGCAGGGCGATCGGATGGAGGAGCAGCGCTGTTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000128566.8 ENSMUST00000133459.8 ENSMUST00000136105.8 ENSMUST00000144977.2 |
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| CDS CAA 90 bp | CAGCGCTGCTCCTCCATCCGATCGCCCTGCACGTGGGTCAGCAGGTaGAAGAAGCCTTCCTGGTCCGGTGAACCTGCCTTGTCTAGAAGG | + |
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Preference number: 6 (lower is better) Translates to: QRCSSIRSPCTWVSR*KKPSWSGEPALSRR Trigger: CCTTCTAGACAAGGCAGGTTCACCGGACCAGGAAGGCTTCTTCAACCTGCTGACCCACGTGCAGGGCGATCGGATGGAGGAGCAGCGCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000128566.8 ENSMUST00000136105.8 ENSMUST00000144977.2 |
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| CDS TCA 72 bp | CCTCCATCCGATCGCCCTGCACGTGGGTCAGCAGGTTaGAGAAGCCTTCCTGGTCCGGTGAACCTGCCTTGT | + |
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Preference number: 6 (lower is better) Translates to: PPSDRPARGSAG*RSLPGPVNLPC Trigger: ACAAGGCAGGTTCACCGGACCAGGAAGGCTTCTTCAACCTGCTGACCCACGTGCAGGGCGATCGGATGGAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000128566.8 ENSMUST00000136105.8 ENSMUST00000144977.2 |
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| CDS GCA 72 bp | TGCAAGGAACAGCGCTGCTCCTCCATCCGATCGCCCTaGACGTGGGTCAGCAGGTTGAAGAAGCCTTCCTGG | + |
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Preference number: 6 (lower is better) Translates to: CKEQRCSSIRSP*TWVSRLKKPSW Trigger: CCAGGAAGGCTTCTTCAACCTGCTGACCCACGTGCAGGGCGATCGGATGGAGGAGCAGCGCTGTTCCTTGCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000128566.8 ENSMUST00000133459.8 ENSMUST00000136105.8 ENSMUST00000144977.2 |
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| CDS CCA 72 bp | CCCTGCACGTGGGTCAGCAGGTTGAAGAAGCCTTCCTaGTCCGGTGAACCTGCCTTGTCTAGAAGGTCTGAG | + |
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Preference number: 6 (lower is better) Translates to: PCTWVSRLKKPS*SGEPALSRRSE Trigger: CTCAGACCTTCTAGACAAGGCAGGTTCACCGGACCAGGAAGGCTTCTTCAACCTGCTGACCCACGTGCAGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000128566.8 ENSMUST00000136105.8 ENSMUST00000144977.2 |
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| CDS CAA 72 bp | GGGCTGAGGGTCCCAGGTCGTTTCTGCATTCCATCCTaGGGGCCGATAGGTTGGAAGCCAGGCAGGGAATTA | + |
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Preference number: 6 (lower is better) Translates to: GLRVPGRFCIPS*GPIGWKPGREL Trigger: TAATTCCCTGCCTGGCTTCCAACCTATCGGCCCCAAGGATGGAATGCAGAAACGACCTGGGACCCTCAGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000004749.7 ENSMUST00000133459.8 ENSMUST00000136105.8 ENSMUST00000142431.8 |
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| CDS CAA 90 bp | GAGGGTCCCAGGTCGTTTCTGCATTCCATCCTTGGGGCCGATAGGTaGGAAGCCAGGCAGGGAATTAACTGTTACACGCTGGTCGTCCAT | + |
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Preference number: 6 (lower is better) Translates to: EGPRSFLHSILGADR*EARQGINCYTLVVH Trigger: ATGGACGACCAGCGTGTAACAGTTAATTCCCTGCCTGGCTTCCAACCTATCGGCCCCAAGGATGGAATGCAGAAACGACCTGGGACCCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000004749.7 ENSMUST00000133459.8 ENSMUST00000136105.8 ENSMUST00000142431.8 |
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| CDS CCA 72 bp | TTAACTGTTACACGCTGGTCGTCCATGCGGCGGCCCTaGGTGTTGACCAGCATATCCATGAGATTGTCCATC | + |
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Preference number: 6 (lower is better) Translates to: LTVTRWSSMRRP*VLTSISMRLSI Trigger: GATGGACAATCTCATGGATATGCTGGTCAACACCCAGGGCCGCCGCATGGACGACCAGCGTGTAACAGTTAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000004749.7 ENSMUST00000128566.8 ENSMUST00000133459.8 ENSMUST00000136105.8 ENSMUST00000142431.8 ENSMUST00000144977.2 |
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| CDS CCA 72 bp | GGTCGTTTCTGCATTCCATCCTTGGGGCCGATAGGTTaGAAGCCAGGCAGGGAATTAACTGTTACACGCTGG | + |
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Preference number: 6 (lower is better) Translates to: GRFCIPSLGPIG*KPGRELTVTRW Trigger: CCAGCGTGTAACAGTTAATTCCCTGCCTGGCTTCCAACCTATCGGCCCCAAGGATGGAATGCAGAAACGACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000004749.7 ENSMUST00000133459.8 ENSMUST00000136105.8 ENSMUST00000142431.8 |
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| CDS CAA 72 bp | AGGTCGTTTCTGCATTCCATCCTTGGGGCCGATAGGTaGGAAGCCAGGCAGGGAATTAACTGTTACACGCTG | + |
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Preference number: 6 (lower is better) Translates to: RSFLHSILGADR*EARQGINCYTL Trigger: CAGCGTGTAACAGTTAATTCCCTGCCTGGCTTCCAACCTATCGGCCCCAAGGATGGAATGCAGAAACGACCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000004749.7 ENSMUST00000133459.8 ENSMUST00000136105.8 ENSMUST00000142431.8 |
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| CDS CAA 72 bp | TGTGGAGTCTCACAGGTAATCTGGACATCACCTACCTaGGGGCCGATAGGTTGGAAGCCAGGCAGGGAATTA | + |
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Preference number: 6 (lower is better) Translates to: CGVSQVIWTSPT*GPIGWKPGREL Trigger: TAATTCCCTGCCTGGCTTCCAACCTATCGGCCCCAAGGTAGGTGATGTCCAGATTACCTGTGAGACTCCACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128566.8 |
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| CDS CAA 90 bp | AGAGAGCTATGTGGAGTCTCACAGGTAATCTGGACATCACCTACCTaGGGGCCGATAGGTTGGAAGCCAGGCAGGGAATTAACTGTTACA | + |
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Preference number: 6 (lower is better) Translates to: RELCGVSQVIWTSPT*GPIGWKPGRELTVT Trigger: TGTAACAGTTAATTCCCTGCCTGGCTTCCAACCTATCGGCCCCAAGGTAGGTGATGTCCAGATTACCTGTGAGACTCCACATAGCTCTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128566.8 |
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| CDS CCA 72 bp | TTTGAGTTCAAAGCTAAATACTTGGGGCCGATAGGTTaGAAGCCAGGCAGGGAATTAACTGTTACACGCTGG | + |
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Preference number: 6 (lower is better) Translates to: FEFKAKYLGPIG*KPGRELTVTRW Trigger: CCAGCGTGTAACAGTTAATTCCCTGCCTGGCTTCCAACCTATCGGCCCCAAGTATTTAGCTTTGAACTCAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144977.2 |
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