Pregenerated sensors for PCOLCE (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029718Ensembl transcript IDs: ENSMUST00000031731.14, ENSMUST00000054564.13, ENSMUST00000124693.8, ENSMUST00000142675.8, ENSMUST00000155251.8, ENSMUST00000197912.5
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GCTCGTCCCAGTAACCCCAGGCCGCCCATTCCACCCGCGGGTCCATaGCCCATTTCCGCCTCGCACCTGGGGGAGGCCCAGTGCCCGAAG | + |
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Preference number: 5 (lower is better) Translates to: ARPSNPRPPIPPAGP*PISASHLGEAQCPK Trigger: CTTCGGGCACTGGGCCTCCCCCAGGTGCGAGGCGGAAATGGGTCATGGACCCGCGGGTGGAATGGGCGGCCTGGGGTTACTGGGACGAGC 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054564.13 |
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| CDS TCA 90 bp | AGTTGCTCTGCAAGGTGCCTGACCGCTTGTACTGCTTTGGGCAGGTaGTGCTGGGGGCAGCAGTGCCCGAAGTGGCCCGGCCGCTGTACC | + |
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Preference number: 5 (lower is better) Translates to: SCSARCLTACTALGR*CWGQQCPKWPGRCT Trigger: GGTACAGCGGCCGGGCCACTTCGGGCACTGCTGCCCCCAGCATCACCTGCCCAAAGCAGTACAAGCGGTCAGGCACCTTGCAGAGCAACT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000197912.5 |
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| CDS TCA 90 bp | AGGTGCAGGCCTGAAGGTGCCGCAGAAGCGTCCAAGTCGCTGGCCTaGGGTGCCAGAGCCAGCAAAGACCTCCAGAGCATCGTAGCGGCA | + |
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Preference number: 5 (lower is better) Translates to: RCRPEGAAEASKSLA*GARASKDLQSIVAA Trigger: TGCCGCTACGATGCTCTGGAGGTCTTTGCTGGCTCTGGCACCTCAGGCCAGCGACTTGGACGCTTCTGCGGCACCTTCAGGCCTGCACCT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000031731.14 ENSMUST00000054564.13 ENSMUST00000124693.8 ENSMUST00000142675.8 ENSMUST00000155251.8 ENSMUST00000197912.5 |
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| CDS GCA 90 bp | AAGTGGCCCGGCCGCTGTACCAGAGCAGGAAGCCTCGTCCCCCGGTaGCCTCGTCAGTTGTCATCCTTAAAGTCACTTGGTTGCCAGGTG | + |
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Preference number: 5 (lower is better) Translates to: KWPGRCTRAGSLVPR*PRQLSSLKSLGCQV Trigger: CACCTGGCAACCAAGTGACTTTAAGGATGACAACTGACGAGGGCACCGGGGGACGAGGCTTCCTGCTCTGGTACAGCGGCCGGGCCACTT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENSMUST00000031731.14 ENSMUST00000054564.13 ENSMUST00000124693.8 ENSMUST00000142675.8 ENSMUST00000155251.8 ENSMUST00000197912.5 |
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| CDS CCA 90 bp | GGGGCATCTGCCTGCAGGGCACATACAACTTCAGAGAGGTGCCACTaGGCGGAGAGGGCAGGTCCAGTCCTCCGGTTTTGTAGACACCAA | + |
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Preference number: 5 (lower is better) Translates to: GASACRAHTTSERCH*AERAGPVLRFCRHQ Trigger: TTGGTGTCTACAAAACCGGAGGACTGGACCTGCCCTCTCCGCCCAGTGGCACCTCTCTGAAGTTGTATGTGCCCTGCAGGCAGATGCCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031731.14 ENSMUST00000054564.13 ENSMUST00000197912.5 |
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| CDS CCA 90 bp | GAGGCTGAGAAGCCATCTGCGGTGACACTGAGATCTGATACAAACTaGACCAGGAGCTCGTTCCCTTCAGAAGAGATGGGGCTAGGGGCC | + |
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Preference number: 5 (lower is better) Translates to: EAEKPSAVTLRSDTN*TRSSFPSEEMGLGA Trigger: GGCCCCTAGCCCCATCTCTTCTGAAGGGAACGAGCTCCTGGTCCAGTTTGTATCAGATCTCAGTGTCACCGCAGATGGCTTCTCAGCCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031731.14 ENSMUST00000054564.13 |
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| CDS CCA 90 bp | GGCCCCGGACCATGGTCTTCACTGTTCCTGTCACCACTAGGCTACTaGAACAGAAGTTGCTCTGCAAGGTGCCTGACCGCTTGTACTGCT | + |
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Preference number: 5 (lower is better) Translates to: GPGPWSSLFLSPLGY*NRSCSARCLTACTA Trigger: AGCAGTACAAGCGGTCAGGCACCTTGCAGAGCAACTTCTGTTCCAGTAGCCTAGTGGTGACAGGAACAGTGAAGACCATGGTCCGGGGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031731.14 ENSMUST00000054564.13 ENSMUST00000197912.5 |
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| CDS CCA 90 bp | GGAAGCCTCTGGTGTCTCTGCAGGTTGGGATTTAGGTTTAGTGGGTaGTTTGACTTTGGGCCCAGTTCCTGTCTTAGGGTCAGAGCGGGA | + |
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Preference number: 5 (lower is better) Translates to: GSLWCLCRLGFRFSG*FDFGPSSCLRVRAG Trigger: TCCCGCTCTGACCCTAAGACAGGAACTGGGCCCAAAGTCAAACCACCCACTAAACCTAAATCCCAACCTGCAGAGACACCAGAGGCTTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031731.14 ENSMUST00000054564.13 |
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| CDS CCA 90 bp | CCTGGTTGGACCTGTAGAGAACCACGAAGCTCTCTGGAGGAAGGATaGGGCCTCTGTTTTCTTCCACCTGACCCATCAGCAGATAACTGG | + |
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Preference number: 5 (lower is better) Translates to: PGWTCREPRSSLEEG*GLCFLPPDPSADNW Trigger: CCAGTTATCTGCTGATGGGTCAGGTGGAAGAAAACAGAGGCCCCATCCTTCCTCCAGAGAGCTTCGTGGTTCTCTACAGGTCCAACCAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031731.14 ENSMUST00000054564.13 ENSMUST00000197912.5 |
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| CDS GCA 90 bp | TTCACTGTTCCTGTCACCACTAGGCTACTGGAACAGAAGTTGCTCTaGAAGGTGCCTGACCGCTTGTACTGCTTTGGGCAGGTGATGCTG | + |
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Preference number: 5 (lower is better) Translates to: FTVPVTTRLLEQKLL*KVPDRLYCFGQVML Trigger: CAGCATCACCTGCCCAAAGCAGTACAAGCGGTCAGGCACCTTGCAGAGCAACTTCTGTTCCAGTAGCCTAGTGGTGACAGGAACAGTGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031731.14 ENSMUST00000054564.13 ENSMUST00000197912.5 |
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| CDS CCA 72 bp | TCCGCCTCGCACCTGGGGGAGGCCCAGTGCCCGAAGTaGCCCGGCCGCTGTACCAGAGCAGGAAGCCTCGTC | + |
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Preference number: 6 (lower is better) Translates to: SASHLGEAQCPK*PGRCTRAGSLV Trigger: GACGAGGCTTCCTGCTCTGGTACAGCGGCCGGGCCACTTCGGGCACTGGGCCTCCCCCAGGTGCGAGGCGGA 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054564.13 |
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| CDS TCA 72 bp | AGTAACCCCAGGCCGCCCATTCCACCCGCGGGTCCATaGCCCATTTCCGCCTCGCACCTGGGGGAGGCCCAG | + |
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Preference number: 6 (lower is better) Translates to: SNPRPPIPPAGP*PISASHLGEAQ Trigger: CTGGGCCTCCCCCAGGTGCGAGGCGGAAATGGGTCATGGACCCGCGGGTGGAATGGGCGGCCTGGGGTTACT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054564.13 |
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| CDS TCA 72 bp | GCAAGGTGCCTGACCGCTTGTACTGCTTTGGGCAGGTaGTGCTGGGGGCAGCAGTGCCCGAAGTGGCCCGGC | + |
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Preference number: 6 (lower is better) Translates to: ARCLTACTALGR*CWGQQCPKWPG Trigger: GCCGGGCCACTTCGGGCACTGCTGCCCCCAGCATCACCTGCCCAAAGCAGTACAAGCGGTCAGGCACCTTGC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000197912.5 |
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| CDS CCA 72 bp | TGCCTGGTGGGTAATCCGACTCAGGCCAGTTGGGCGTaGTCAAGGTTCCCTGCGCCTTCTCCATCCGCCCCC | + |
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Preference number: 6 (lower is better) Translates to: CLVGNPTQASWA*SRFPAPSPSAP Trigger: GGGGGCGGATGGAGAAGGCGCAGGGAACCTTGACCACGCCCAACTGGCCTGAGTCGGATTACCCACCAGGCA 65% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000031731.14 ENSMUST00000054564.13 ENSMUST00000124693.8 ENSMUST00000142675.8 ENSMUST00000155251.8 |
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| CDS GCA 72 bp | GCATCTGCCTGCAGGGCACATACAACTTCAGAGAGGTaGCACTGGGCGGAGAGGGCAGGTCCAGTCCTCCGG | + |
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Preference number: 6 (lower is better) Translates to: ASACRAHTTSER*HWAERAGPVLR Trigger: CCGGAGGACTGGACCTGCCCTCTCCGCCCAGTGGCACCTCTCTGAAGTTGTATGTGCCCTGCAGGCAGATGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031731.14 ENSMUST00000054564.13 ENSMUST00000197912.5 |
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| CDS CCA 72 bp | GCAGGCCTGAAGGTGCCGCAGAAGCGTCCAAGTCGCTaGCCTGAGGTGCCAGAGCCAGCAAAGACCTCCAGA | + |
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Preference number: 6 (lower is better) Translates to: AGLKVPQKRPSR*PEVPEPAKTSR Trigger: TCTGGAGGTCTTTGCTGGCTCTGGCACCTCAGGCCAGCGACTTGGACGCTTCTGCGGCACCTTCAGGCCTGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000031731.14 ENSMUST00000054564.13 ENSMUST00000124693.8 ENSMUST00000142675.8 ENSMUST00000155251.8 ENSMUST00000197912.5 |
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| CDS TCA 72 bp | CCTGAAGGTGCCGCAGAAGCGTCCAAGTCGCTGGCCTaGGGTGCCAGAGCCAGCAAAGACCTCCAGAGCATC | + |
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Preference number: 6 (lower is better) Translates to: PEGAAEASKSLA*GARASKDLQSI Trigger: GATGCTCTGGAGGTCTTTGCTGGCTCTGGCACCTCAGGCCAGCGACTTGGACGCTTCTGCGGCACCTTCAGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000031731.14 ENSMUST00000054564.13 ENSMUST00000124693.8 ENSMUST00000142675.8 ENSMUST00000155251.8 ENSMUST00000197912.5 |
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| CDS CCA 72 bp | GCCTGCAGGGCACATACAACTTCAGAGAGGTGCCACTaGGCGGAGAGGGCAGGTCCAGTCCTCCGGTTTTGT | + |
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Preference number: 6 (lower is better) Translates to: ACRAHTTSERCH*AERAGPVLRFC Trigger: ACAAAACCGGAGGACTGGACCTGCCCTCTCCGCCCAGTGGCACCTCTCTGAAGTTGTATGTGCCCTGCAGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031731.14 ENSMUST00000054564.13 ENSMUST00000197912.5 |
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| CDS GCA 72 bp | GGCCGCTGTACCAGAGCAGGAAGCCTCGTCCCCCGGTaGCCTCGTCAGTTGTCATCCTTAAAGTCACTTGGT | + |
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Preference number: 6 (lower is better) Translates to: GRCTRAGSLVPR*PRQLSSLKSLG Trigger: ACCAAGTGACTTTAAGGATGACAACTGACGAGGGCACCGGGGGACGAGGCTTCCTGCTCTGGTACAGCGGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENSMUST00000031731.14 ENSMUST00000054564.13 ENSMUST00000124693.8 ENSMUST00000142675.8 ENSMUST00000155251.8 ENSMUST00000197912.5 |
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| CDS CCA 72 bp | GGCCACTGGGGTTGCCTGGGTAGCAGGGGAAGCCTCTaGTGTCTCTGCAGGTTGGGATTTAGGTTTAGTGGG | + |
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Preference number: 6 (lower is better) Translates to: GHWGCLGSRGSL*CLCRLGFRFSG Trigger: CCCACTAAACCTAAATCCCAACCTGCAGAGACACCAGAGGCTTCCCCTGCTACCCAGGCAACCCCAGTGGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031731.14 ENSMUST00000054564.13 |
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| CDS CAA 90 bp | TGGGGTTGCCTGGGTAGCAGGGGAAGCCTCTGGTGTCTCTGCAGGTaGGGATTTAGGTTTAGTGGGTGGTTTGACTTTGGGCCCAGTTCC | + |
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Preference number: 6 (lower is better) Translates to: WGCLGSRGSLWCLCR*GFRFSGWFDFGPSS Trigger: GGAACTGGGCCCAAAGTCAAACCACCCACTAAACCTAAATCCCAACCTGCAGAGACACCAGAGGCTTCCCCTGCTACCCAGGCAACCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031731.14 ENSMUST00000054564.13 |
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| CDS CAA 90 bp | GCCTCTGGTGTCTCTGCAGGTTGGGATTTAGGTTTAGTGGGTGGTTaGACTTTGGGCCCAGTTCCTGTCTTAGGGTCAGAGCGGGACTGG | + |
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Preference number: 6 (lower is better) Translates to: ASGVSAGWDLGLVGG*TLGPVPVLGSERDW Trigger: CCAGTCCCGCTCTGACCCTAAGACAGGAACTGGGCCCAAAGTCAAACCACCCACTAAACCTAAATCCCAACCTGCAGAGACACCAGAGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031731.14 ENSMUST00000054564.13 |
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| CDS GCA 72 bp | CCTGTCACCACTAGGCTACTGGAACAGAAGTTGCTCTaGAAGGTGCCTGACCGCTTGTACTGCTTTGGGCAG | + |
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Preference number: 6 (lower is better) Translates to: PVTTRLLEQKLL*KVPDRLYCFGQ Trigger: CTGCCCAAAGCAGTACAAGCGGTCAGGCACCTTGCAGAGCAACTTCTGTTCCAGTAGCCTAGTGGTGACAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031731.14 ENSMUST00000054564.13 ENSMUST00000197912.5 |
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| CDS CCA 72 bp | CTCGGGCACCGTAATTGTCCAGATGCACTTCTTGTTTaGGGGGTAGAGGTTGGGGAAACCCTCACTTGCCAC | + |
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Preference number: 6 (lower is better) Translates to: LGHRNCPDALLV*GVEVGETLTCH Trigger: GTGGCAAGTGAGGGTTTCCCCAACCTCTACCCCCCAAACAAGAAGTGCATCTGGACAATTACGGTGCCCGAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000031731.14 ENSMUST00000054564.13 ENSMUST00000142675.8 ENSMUST00000197912.5 |
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| CDS CCA 72 bp | TCCATATCGAAGACTCGGAAGGACAGGGACACAGTCTaGCCCTCGGGCACCGTAATTGTCCAGATGCACTTC | + |
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Preference number: 6 (lower is better) Translates to: SISKTRKDRDTV*PSGTVIVQMHF Trigger: GAAGTGCATCTGGACAATTACGGTGCCCGAGGGCCAGACTGTGTCCCTGTCCTTCCGAGTCTTCGATATGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000031731.14 ENSMUST00000054564.13 ENSMUST00000142675.8 ENSMUST00000197912.5 |
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| CDS CAA 72 bp | GTGCCCTCGTCAGTTGTCATCCTTAAAGTCACTTGGTaGCCAGGTGCGACTACAGGTGCAGGCCTGAAGGTG | + |
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Preference number: 6 (lower is better) Translates to: VPSSVVILKVTW*PGATTGAGLKV Trigger: CACCTTCAGGCCTGCACCTGTAGTCGCACCTGGCAACCAAGTGACTTTAAGGATGACAACTGACGAGGGCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000031731.14 ENSMUST00000054564.13 ENSMUST00000124693.8 ENSMUST00000142675.8 ENSMUST00000155251.8 ENSMUST00000197912.5 |
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| CDS CAA 72 bp | GCAGGTTGGGATTTAGGTTTAGTGGGTGGTTTGACTTaGGGCCCAGTTCCTGTCTTAGGGTCAGAGCGGGAC | + |
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Preference number: 6 (lower is better) Translates to: AGWDLGLVGGLT*GPVPVLGSERD Trigger: GTCCCGCTCTGACCCTAAGACAGGAACTGGGCCCAAAGTCAAACCACCCACTAAACCTAAATCCCAACCTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031731.14 ENSMUST00000054564.13 |
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| CDS CAA 90 bp | ATGGTCTTCACTGTTCCTGTCACCACTAGGCTACTGGAACAGAAGTaGCTCTGCAAGGTGCCTGACCGCTTGTACTGCTTTGGGCAGGTG | + |
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Preference number: 6 (lower is better) Translates to: MVFTVPVTTRLLEQK*LCKVPDRLYCFGQV Trigger: CACCTGCCCAAAGCAGTACAAGCGGTCAGGCACCTTGCAGAGCAACTTCTGTTCCAGTAGCCTAGTGGTGACAGGAACAGTGAAGACCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031731.14 ENSMUST00000054564.13 ENSMUST00000197912.5 |
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| CDS GCA 72 bp | CTGTTCCTGTCACCACTAGGCTACTGGAACAGAAGTTaGTCTGCAAGGTGCCTGACCGCTTGTACTGCTTTG | + |
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Preference number: 6 (lower is better) Translates to: LFLSPLGYWNRS*SARCLTACTAL Trigger: CAAAGCAGTACAAGCGGTCAGGCACCTTGCAGAGCAACTTCTGTTCCAGTAGCCTAGTGGTGACAGGAACAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031731.14 ENSMUST00000054564.13 ENSMUST00000197912.5 |
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| CDS CCA 72 bp | AAGCCATCTGCGGTGACACTGAGATCTGATACAAACTaGACCAGGAGCTCGTTCCCTTCAGAAGAGATGGGG | + |
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Preference number: 6 (lower is better) Translates to: KPSAVTLRSDTN*TRSSFPSEEMG Trigger: CCCCATCTCTTCTGAAGGGAACGAGCTCCTGGTCCAGTTTGTATCAGATCTCAGTGTCACCGCAGATGGCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031731.14 ENSMUST00000054564.13 |
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| CDS CCA 72 bp | TGGTGTCTCTGCAGGTTGGGATTTAGGTTTAGTGGGTaGTTTGACTTTGGGCCCAGTTCCTGTCTTAGGGTC | + |
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Preference number: 6 (lower is better) Translates to: WCLCRLGFRFSG*FDFGPSSCLRV Trigger: GACCCTAAGACAGGAACTGGGCCCAAAGTCAAACCACCCACTAAACCTAAATCCCAACCTGCAGAGACACCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031731.14 ENSMUST00000054564.13 |
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| CDS CAA 72 bp | GTCTCTGCAGGTTGGGATTTAGGTTTAGTGGGTGGTTaGACTTTGGGCCCAGTTCCTGTCTTAGGGTCAGAG | + |
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Preference number: 6 (lower is better) Translates to: VSAGWDLGLVGG*TLGPVPVLGSE Trigger: CTCTGACCCTAAGACAGGAACTGGGCCCAAAGTCAAACCACCCACTAAACCTAAATCCCAACCTGCAGAGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031731.14 ENSMUST00000054564.13 |
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