Pregenerated sensors for PCNP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000071533Ensembl transcript IDs: ENSMUST00000096021.10, ENSMUST00000114444.9, ENSMUST00000119981.8, ENSMUST00000122253.2, ENSMUST00000125040.8, ENSMUST00000130818.8
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTGTTGAAGTGGAGGTTGCACATATGCCAGAGGCAGAGTGAGTGCTaGTGTCACGGGCAAGCCTGCCCGAGGAGCTCACCGAGGACGCGT | + |
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Preference number: 1 (lower is better) Translates to: LLKWRLHICQRQSEC*CHGQACPRSSPRTR Trigger: ACGCGTCCTCGGTGAGCTCCTCGGGCAGGCTTGCCCGTGACAGCAGCACTCACTCTGCCTCTGGCATATGTGCAACCTCCACTTCAACAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119981.8 |
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| 3UTR TCA 90 bp | ATTCAGACTGTTGAAGTGGAGGTTGCACATATGCCAGAGGCAGAGTaGGTGCTGCTGTCACGGGCAAGCCTGCCCGAGGAGCTCACCGAG | + |
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Preference number: 1 (lower is better) Translates to: IQTVEVEVAHMPEAE*VLLSRASLPEELTE Trigger: CTCGGTGAGCTCCTCGGGCAGGCTTGCCCGTGACAGCAGCACTCACTCTGCCTCTGGCATATGTGCAACCTCCACTTCAACAGTCTGAAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119981.8 |
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| 3UTR GCA 90 bp | CCGAGGAGCTCACCGAGGACGCGTTTACAGTTTATGTCACCACTATaGAGTCCTGGGTTGTGGAACTCTGGGTTGTTGGTGACATCACTA | + |
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Preference number: 1 (lower is better) Translates to: PRSSPRTRLQFMSPL*SPGLWNSGLLVTSL Trigger: TAGTGATGTCACCAACAACCCAGAGTTCCACAACCCAGGACTGCATAGTGGTGACATAAACTGTAAACGCGTCCTCGGTGAGCTCCTCGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119981.8 |
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| 3UTR CCA 90 bp | GGCAGAAGCTGTCTGAAGTTGCAGAAGCCATTCAGACTGTTGAAGTaGAGGTTGCACATATGCCAGAGGCAGAGTGAGTGCTGCTGTCAC | + |
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Preference number: 1 (lower is better) Translates to: GRSCLKLQKPFRLLK*RLHICQRQSECCCH Trigger: GTGACAGCAGCACTCACTCTGCCTCTGGCATATGTGCAACCTCCACTTCAACAGTCTGAATGGCTTCTGCAACTTCAGACAGCTTCTGCC 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119981.8 |
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| 3UTR CCA 90 bp | TGTAAAAGAGAAACATGCAGTGTCGATGTTTTAATCCCAGTACTCTaGAGGCAGAGGCAGGTGGATCCAGTCTATATAGCGAGCTCTAGG | + |
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Preference number: 1 (lower is better) Translates to: CKRETCSVDVLIPVL*RQRQVDPVYIASSR Trigger: CCTAGAGCTCGCTATATAGACTGGATCCACCTGCCTCTGCCTCCAGAGTACTGGGATTAAAACATCGACACTGCATGTTTCTCTTTTACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000122253.2 |
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| 3UTR GCA 90 bp | AAAAATACAAAACAAACATCCTACATTCAGAACTCTAAGAGCATATaGGATGAGACGCTCGCAATGAAGATGTGTCTAGAGAAGCATTTC | + |
|
Preference number: 1 (lower is better) Translates to: KNTKQTSYIQNSKSI*DETLAMKMCLEKHF Trigger: GAAATGCTTCTCTAGACACATCTTCATTGCGAGCGTCTCATCGCATATGCTCTTAGAGTTCTGAATGTAGGATGTTTGTTTTGTATTTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000114444.9 ENSMUST00000125040.8 |
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| 3UTR-3UTR CCA 90 bp | TGCTGCTGTCACGGGCAAGCCTGCCCGAGGAGCTCACCGAGGACGCGTTTACAGTGCAGTCCTGGGTTGTaGAACTCTGGGTTGTTGGTG | + |
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Preference number: 2 (lower is better) Translates to: CCCHGQACPRSSPRTRLQCSPGL*NSGLLV Trigger: CACCAACAACCCAGAGTTCCACAACCCAGGACTGCA...CTGTAAACGCGTCCTCGGTGAGCTCCTCGGGCAGGCTTGCCCGTGACAGCAGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119981.8 |
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| 3UTR-3UTR CCA 90 bp | AGGAGACTGCTCCTTCTAACTGCACCCACCCACACCCCAGTCTCAGACACTTCACGCTCCCACAGCTTCTaGTTATCGGAAAAGCCATGC | + |
|
Preference number: 2 (lower is better) Translates to: RRLLLLTAPTHTPVSDTSRSHSF*LSEKPC Trigger: GCATGGCTTTTCCGATAACCAGAAGCTGTGGGAGCG...TGAAGTGTCTGAGACTGGGGTGTGGGTGGGTGCAGTTAGAAGGAGCAGTCTCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000125040.8 ENSMUST00000130818.8 |
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| 3UTR-3UTR TCA 90 bp | AAAAGGAGACTGCTCCTTCTAACTGCACCCACCCACACCCCAGTCTCAGACACTGCAGCTGTCACCTACTaGCCCAACAGTCTCTTCACT | + |
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Preference number: 2 (lower is better) Translates to: KRRLLLLTAPTHTPVSDTAAVTY*PNSLFT Trigger: AGTGAAGAGACTGTTGGGTCAGTAGGTGACAGCTGC...AGTGTCTGAGACTGGGGTGTGGGTGGGTGCAGTTAGAAGGAGCAGTCTCCTTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130818.8 |
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| 3UTR CAA 90 bp | AGCTGTCTGAAGTTGCAGAAGCCATTCAGACTGTTGAAGTGGAGGTaGCACATATGCCAGAGGCAGAGTGAGTGCTGCTGTCACGGGCAA | + |
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Preference number: 2 (lower is better) Translates to: SCLKLQKPFRLLKWR*HICQRQSECCCHGQ Trigger: TTGCCCGTGACAGCAGCACTCACTCTGCCTCTGGCATATGTGCAACCTCCACTTCAACAGTCTGAATGGCTTCTGCAACTTCAGACAGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119981.8 |
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| 3UTR-3UTR GCA 90 bp | AGGAGACTGCTCCTTCTAACTGCACCCACCCACACCCCAGTCTCAGACACTTCAACAAGAAGATACCTCTaGAGCTGTCACCTACTGACC | + |
|
Preference number: 2 (lower is better) Translates to: RRLLLLTAPTHTPVSDTSTRRYL*SCHLLT Trigger: GGTCAGTAGGTGACAGCTGCAGAGGTATCTTCTTGT...TGAAGTGTCTGAGACTGGGGTGTGGGTGGGTGCAGTTAGAAGGAGCAGTCTCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130818.8 |
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| 3UTR-3UTR GCA 90 bp | CCAGTGAATCATCGCCACCCAGGAAACTCCCCGAAGCTGCCTCCAAACTCAACAGTGTGTCGCCTCATCTaGCTTCATACAATGCTATAC | + |
|
Preference number: 2 (lower is better) Translates to: PVNHRHPGNSPKLPPNSTVCRLI*LHTMLY Trigger: GTATAGCATTGTATGAAGGCAGATGAGGCGACACAC...TGTTGAGTTTGGAGGCAGCTTCGGGGAGTTTCCTGGGTGGCGATGATTCACTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000114444.9 ENSMUST00000125040.8 |
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| 3UTR-3UTR CCA 90 bp | CCAGGAAACTCCCCGAAGCTGCCTCCAAACTCAACATTGCCATTTTCAAAGGACCGCTCCCACAGCTTCTaGTTATCGGAAAAGCCATGC | + |
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Preference number: 2 (lower is better) Translates to: PGNSPKLPPNSTLPFSKDRSHSF*LSEKPC Trigger: GCATGGCTTTTCCGATAACCAGAAGCTGTGGGAGCG...GTCCTTTGAAAATGGCAATGTTGAGTTTGGAGGCAGCTTCGGGGAGTTTCCTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000125040.8 |
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| 3UTR-3UTR TCA 90 bp | AAAAGGAGACTGCTCCTTCTAACTGCACCCACCCACACCCCAGTCTCAGACACTTTCTTCAGGTCCTGGTaGAGTCGAAACAACTTACCA | + |
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Preference number: 2 (lower is better) Translates to: KRRLLLLTAPTHTPVSDTFFRSW*SRNNLP Trigger: TGGTAAGTTGTTTCGACTTCACCAGGACCTGAAGAA...AGTGTCTGAGACTGGGGTGTGGGTGGGTGCAGTTAGAAGGAGCAGTCTCCTTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130818.8 |
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| 3UTR-3UTR TCA 90 bp | GAAGTTGCAGAAGCCATTCAGACTGTTGAAGTGGAGGTTGCACATATGCCAGAGTTCTTGTCTGGCCAGTaGGTTCTGCAGAAAGTCCTC | + |
|
Preference number: 2 (lower is better) Translates to: EVAEAIQTVEVEVAHMPEFLSGQ*VLQKVL Trigger: GAGGACTTTCTGCAGAACTCACTGGCCAGACAAGAA...CTCTGGCATATGTGCAACCTCCACTTCAACAGTCTGAATGGCTTCTGCAACTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119981.8 |
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| 3UTR-3UTR GCA 90 bp | GATGAGACGCTCGCAATGAAGATGTGTCTAGAGAAGCATTTCTGTCCTATTGCAGAAACTCCCCGAAGCTaGCTCCAAACTCAACATTGC | + |
|
Preference number: 2 (lower is better) Translates to: DETLAMKMCLEKHFCPIAETPRS*LQTQHC Trigger: GCAATGTTGAGTTTGGAGGCAGCTTCGGGGAGTTTC...TGCAATAGGACAGAAATGCTTCTCTAGACACATCTTCATTGCGAGCGTCTCATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000114444.9 ENSMUST00000125040.8 |
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| 3UTR-3UTR GCA 90 bp | CCAGGAAACTCCCCGAAGCTGCCTCCAAACTCAACATTGCCATTTTCAAAGGACCACTACATTAAAAACTaGCCAGTGAATCATCGCCAC | + |
|
Preference number: 2 (lower is better) Translates to: PGNSPKLPPNSTLPFSKDHYIKN*PVNHRH Trigger: GTGGCGATGATTCACTGGGCAGTTTTTAATGTAGTG...GTCCTTTGAAAATGGCAATGTTGAGTTTGGAGGCAGCTTCGGGGAGTTTCCTGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000114444.9 ENSMUST00000125040.8 |
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| 3UTR-3UTR GCA 90 bp | GATGAGACGCTCGCAATGAAGATGTGTCTAGAGAAGCATTTCTGTCCTATTGCAAGTCAGGAGAGGAACTaGTTCCAGTTTGAAGCAGAC | + |
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Preference number: 2 (lower is better) Translates to: DETLAMKMCLEKHFCPIASQERN*FQFEAD Trigger: GTCTGCTTCAAACTGGAAGCAGTTCCTCTCCTGACT...TGCAATAGGACAGAAATGCTTCTCTAGACACATCTTCATTGCGAGCGTCTCATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114444.9 ENSMUST00000125040.8 |
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| 3UTR-3UTR TCA 90 bp | CGATGTTTTAATCCCAGTACTCTGGAGGCAGAGGCAGGTGGATCCAGTCTATATCGTGTGTACTTCATTTaGACTGGCAATAGTATCAGA | + |
|
Preference number: 2 (lower is better) Translates to: RCFNPSTLEAEAGGSSLYRVYFI*TGNSIR Trigger: TCTGATACTATTGCCAGTTCAAATGAAGTACACACG...ATATAGACTGGATCCACCTGCCTCTGCCTCCAGAGTACTGGGATTAAAACATCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122253.2 |
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| 3UTR-3UTR GCA 90 bp | GAAACTCCCCGAAGCTGCCTCCAAACTCAACATTGCCATTTTCAAAGGACATTTAACTCTAAGAGCATATaGGATGAGACGCTCGCAATG | + |
|
Preference number: 2 (lower is better) Translates to: ETPRSCLQTQHCHFQRTFNSKSI*DETLAM Trigger: CATTGCGAGCGTCTCATCGCATATGCTCTTAGAGTT...AAATGTCCTTTGAAAATGGCAATGTTGAGTTTGGAGGCAGCTTCGGGGAGTTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000114444.9 ENSMUST00000125040.8 |
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| 3UTR-3UTR CCA 90 bp | GATGAGACGCTCGCAATGAAGATGTGTCTAGAGAAGCATTTCTGTCCTATTGCATGGAGGCATTTCTTCTaGCTCACTATCTTCATCTTC | + |
|
Preference number: 2 (lower is better) Translates to: DETLAMKMCLEKHFCPIAWRHFF*LTIFIF Trigger: GAAGATGAAGATAGTGAGCCAGAAGAAATGCCTCCA...TGCAATAGGACAGAAATGCTTCTCTAGACACATCTTCATTGCGAGCGTCTCATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125040.8 |
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| 3UTR GCA 72 bp | TGGAGGTTGCACATATGCCAGAGGCAGAGTGAGTGCTaGTGTCACGGGCAAGCCTGCCCGAGGAGCTCACCG | + |
|
Preference number: 3 (lower is better) Translates to: WRLHICQRQSEC*CHGQACPRSSP Trigger: CGGTGAGCTCCTCGGGCAGGCTTGCCCGTGACAGCAGCACTCACTCTGCCTCTGGCATATGTGCAACCTCCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119981.8 |
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| 3UTR TCA 72 bp | GTTGAAGTGGAGGTTGCACATATGCCAGAGGCAGAGTaGGTGCTGCTGTCACGGGCAAGCCTGCCCGAGGAG | + |
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Preference number: 3 (lower is better) Translates to: VEVEVAHMPEAE*VLLSRASLPEE Trigger: CTCCTCGGGCAGGCTTGCCCGTGACAGCAGCACTCACTCTGCCTCTGGCATATGTGCAACCTCCACTTCAAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119981.8 |
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| 3UTR GCA 72 bp | AAGCCATTCAGACTGTTGAAGTGGAGGTTGCACATATaGCAGAGGCAGAGTGAGTGCTGCTGTCACGGGCAA | + |
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Preference number: 3 (lower is better) Translates to: KPFRLLKWRLHI*QRQSECCCHGQ Trigger: TTGCCCGTGACAGCAGCACTCACTCTGCCTCTGGCATATGTGCAACCTCCACTTCAACAGTCTGAATGGCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119981.8 |
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| 3UTR-3UTR CAA 90 bp | AGGAGACTGCTCCTTCTAACTGCACCCACCCACACCCCAGTCTCAGACACTTCATTTTTACTGAGCAGATaGATGGGAGCAGCAACCTCA | + |
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Preference number: 3 (lower is better) Translates to: RRLLLLTAPTHTPVSDTSFLLSR*MGAATS Trigger: TGAGGTTGCTGCTCCCATCAATCTGCTCAGTAAAAA...TGAAGTGTCTGAGACTGGGGTGTGGGTGGGTGCAGTTAGAAGGAGCAGTCTCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000130818.8 |
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| 3UTR GCA 72 bp | TCACCGAGGACGCGTTTACAGTTTATGTCACCACTATaGAGTCCTGGGTTGTGGAACTCTGGGTTGTTGGTG | + |
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Preference number: 3 (lower is better) Translates to: SPRTRLQFMSPL*SPGLWNSGLLV Trigger: CACCAACAACCCAGAGTTCCACAACCCAGGACTGCATAGTGGTGACATAAACTGTAAACGCGTCCTCGGTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119981.8 |
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| 3UTR-3UTR CAA 90 bp | GTGAATCATCGCCACCCAGGAAACTCCCCGAAGCTGCCTCCAAACTCAACATTGCTTCACTTAATTGTCTaGGTCGTGGACGTTTCCAAG | + |
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Preference number: 3 (lower is better) Translates to: VNHRHPGNSPKLPPNSTLLHLIV*VVDVSK Trigger: CTTGGAAACGTCCACGACCAAGACAATTAAGTGAAG...CAATGTTGAGTTTGGAGGCAGCTTCGGGGAGTTTCCTGGGTGGCGATGATTCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125040.8 |
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| 3UTR TCA 72 bp | CTGCTTCTTGAAGTCACTACATTAAAAACTGCCCAGTaGATCATCGCCACCCAGGAAACTCCCCGAAGCTGC | + |
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Preference number: 3 (lower is better) Translates to: LLLEVTTLKTAQ*IIATQETPRSC Trigger: GCAGCTTCGGGGAGTTTCCTGGGTGGCGATGATTCACTGGGCAGTTTTTAATGTAGTGACTTCAAGAAGCAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000114444.9 ENSMUST00000125040.8 |
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| 3UTR CCA 72 bp | GACGCGTTTACAGTTTATGTCACCACTATGCAGTCCTaGGTTGTGGAACTCTGGGTTGTTGGTGACATCACT | + |
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Preference number: 3 (lower is better) Translates to: DAFTVYVTTMQS*VVELWVVGDIT Trigger: AGTGATGTCACCAACAACCCAGAGTTCCACAACCCAGGACTGCATAGTGGTGACATAAACTGTAAACGCGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119981.8 |
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| 3UTR CCA 72 bp | GAAACATGCAGTGTCGATGTTTTAATCCCAGTACTCTaGAGGCAGAGGCAGGTGGATCCAGTCTATATAGCG | + |
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Preference number: 3 (lower is better) Translates to: ETCSVDVLIPVL*RQRQVDPVYIA Trigger: CGCTATATAGACTGGATCCACCTGCCTCTGCCTCCAGAGTACTGGGATTAAAACATCGACACTGCATGTTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122253.2 |
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| 3UTR CCA 72 bp | TTACAGTTTATGTCACCACTATGCAGTCCTGGGTTGTaGAACTCTGGGTTGTTGGTGACATCACTAGTCTTC | + |
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Preference number: 3 (lower is better) Translates to: LQFMSPLCSPGL*NSGLLVTSLVF Trigger: GAAGACTAGTGATGTCACCAACAACCCAGAGTTCCACAACCCAGGACTGCATAGTGGTGACATAAACTGTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119981.8 |
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| 3UTR-3UTR CAA 90 bp | GATGAGACGCTCGCAATGAAGATGTGTCTAGAGAAGCATTTCTGTCCTATTGCACCTCCAAACTCAACATaGCCATTTTCAAAGGACATT | + |
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Preference number: 3 (lower is better) Translates to: DETLAMKMCLEKHFCPIAPPNST*PFSKDI Trigger: AATGTCCTTTGAAAATGGCAATGTTGAGTTTGGAGG...TGCAATAGGACAGAAATGCTTCTCTAGACACATCTTCATTGCGAGCGTCTCATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000114444.9 ENSMUST00000125040.8 |
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| 3UTR GCA 72 bp | AAACAAACATCCTACATTCAGAACTCTAAGAGCATATaGGATGAGACGCTCGCAATGAAGATGTGTCTAGAG | + |
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Preference number: 3 (lower is better) Translates to: KQTSYIQNSKSI*DETLAMKMCLE Trigger: CTCTAGACACATCTTCATTGCGAGCGTCTCATCGCATATGCTCTTAGAGTTCTGAATGTAGGATGTTTGTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114444.9 ENSMUST00000125040.8 |
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| CDS-3UTR GCA 90 bp | AGGAGACTGCTCCTTCTAACTGCACCCACCCACACCCCAGTCTCAGACACTTCAGCGGCTCCGGCTCGCTaGGGCTTCTCTGGCTTCTCC | + |
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Preference number: 4 (lower is better) Translates to: RRLLLLTAPTHTPVSDTSAAPAR*GFSGFS Trigger: GGAGAAGCCAGAGAAGCCGCAGCGAGCCGGAGCCGC...TGAAGTGTCTGAGACTGGGGTGTGGGTGGGTGCAGTTAGAAGGAGCAGTCTCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000114444.9 ENSMUST00000125040.8 ENSMUST00000130818.8 |
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| CDS-3UTR GCA 90 bp | GTGAATCATCGCCACCCAGGAAACTCCCCGAAGCTGCCTCCAAACTCAACATTGGCGGCTCCGGCTCGCTaGGGCTTCTCTGGCTTCTCC | + |
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Preference number: 4 (lower is better) Translates to: VNHRHPGNSPKLPPNSTLAAPAR*GFSGFS Trigger: GGAGAAGCCAGAGAAGCCGCAGCGAGCCGGAGCCGC...CAATGTTGAGTTTGGAGGCAGCTTCGGGGAGTTTCCTGGGTGGCGATGATTCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000114444.9 ENSMUST00000125040.8 |
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| CDS-3UTR CCA 90 bp | GTGCTGCTGTCACGGGCAAGCCTGCCCGAGGAGCTCACCGAGGACGCGTTTACATGGAGGCATTTCTTCTaGCTCACTATCTTCATCTTC | + |
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Preference number: 4 (lower is better) Translates to: VLLSRASLPEELTEDAFTWRHFF*LTIFIF Trigger: GAAGATGAAGATAGTGAGCCAGAAGAAATGCCTCCA...TGTAAACGCGTCCTCGGTGAGCTCCTCGGGCAGGCTTGCCCGTGACAGCAGCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119981.8 |
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| CDS-3UTR GCA 90 bp | GAAACTCCCCGAAGCTGCCTCCAAACTCAACATTGCCATTTTCAAAGGACATTTGCGGCTCCGGCTCGCTaGGGCTTCTCTGGCTTCTCC | + |
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Preference number: 4 (lower is better) Translates to: ETPRSCLQTQHCHFQRTFAAPAR*GFSGFS Trigger: GGAGAAGCCAGAGAAGCCGCAGCGAGCCGGAGCCGC...AAATGTCCTTTGAAAATGGCAATGTTGAGTTTGGAGGCAGCTTCGGGGAGTTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000114444.9 ENSMUST00000125040.8 |
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| CDS-3UTR GCA 90 bp | TGTAAAAGAGAAACATGCAGTGTCGATGTTTTAATCCCAGTACTCTGGAGGCAGGCGGCTCCGGCTCGCTaGGGCTTCTCTGGCTTCTCC | + |
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Preference number: 4 (lower is better) Translates to: CKRETCSVDVLIPVLWRQAAPAR*GFSGFS Trigger: GGAGAAGCCAGAGAAGCCGCAGCGAGCCGGAGCCGC...CTGCCTCCAGAGTACTGGGATTAAAACATCGACACTGCATGTTTCTCTTTTACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000122253.2 |
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| CDS-3UTR CCA 90 bp | AAAAGGAGACTGCTCCTTCTAACTGCACCCACCCACACCCCAGTCTCAGACACTCGCTCCCACAGCTTCTaGTTATCGGAAAAGCCATGC | + |
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Preference number: 4 (lower is better) Translates to: KRRLLLLTAPTHTPVSDTRSHSF*LSEKPC Trigger: GCATGGCTTTTCCGATAACCAGAAGCTGTGGGAGCG...AGTGTCTGAGACTGGGGTGTGGGTGGGTGCAGTTAGAAGGAGCAGTCTCCTTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000114444.9 |
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| CDS-3UTR CCA 90 bp | AAAAGGAGACTGCTCCTTCTAACTGCACCCACCCACACCCCAGTCTCAGACACTGGAACTGAGATTGTGTaGCAGTACAAGAGGCTCCCA | + |
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Preference number: 4 (lower is better) Translates to: KRRLLLLTAPTHTPVSDTGTEIV*QYKRLP Trigger: TGGGAGCCTCTTGTACTGCCACACAATCTCAGTTCC...AGTGTCTGAGACTGGGGTGTGGGTGGGTGCAGTTAGAAGGAGCAGTCTCCTTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130818.8 |
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| CDS-3UTR TCA 90 bp | GATGGGAGCAGCAACCTCAAAAAGCATCTTTACAAGAAGATACCTCTGCAGCTGTACAAGAGGCTCCCATaGATTAACTCCGGCGGCTCC | + |
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Preference number: 4 (lower is better) Translates to: DGSSNLKKHLYKKIPLQLYKRLP*INSGGS Trigger: GGAGCCGCCGGAGTTAATTCATGGGAGCCTCTTGTA...CAGCTGCAGAGGTATCTTCTTGTAAAGATGCTTTTTGAGGTTGCTGCTCCCATC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000130818.8 |
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| 3UTR CAA 72 bp | AAGTTGCAGAAGCCATTCAGACTGTTGAAGTGGAGGTaGCACATATGCCAGAGGCAGAGTGAGTGCTGCTGT | + |
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Preference number: 4 (lower is better) Translates to: KLQKPFRLLKWR*HICQRQSECCC Trigger: ACAGCAGCACTCACTCTGCCTCTGGCATATGTGCAACCTCCACTTCAACAGTCTGAATGGCTTCTGCAACTT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119981.8 |
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| CDS-3UTR TCA 90 bp | TTCTTTACAAAAAGGAGACTGCTCCTTCTAACTGCACCCACCCACACCCCAGTCGTGTACAGCAGGAACTaGGATTGTGTGGCAGTACAA | + |
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Preference number: 4 (lower is better) Translates to: FFTKRRLLLLTAPTHTPVVYSRN*DCVAVQ Trigger: TTGTACTGCCACACAATCTCAGTTCCTGCTGTACAC...GACTGGGGTGTGGGTGGGTGCAGTTAGAAGGAGCAGTCTCCTTTTTGTAAAGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000130818.8 |
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| CDS-3UTR CCA 90 bp | GAAACTCCCCGAAGCTGCCTCCAAACTCAACATTGCCATTTTCAAAGGACATTTTGGAGGCATTTCTTCTaGCTCACTATCTTCATCTTC | + |
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Preference number: 4 (lower is better) Translates to: ETPRSCLQTQHCHFQRTFWRHFF*LTIFIF Trigger: GAAGATGAAGATAGTGAGCCAGAAGAAATGCCTCCA...AAATGTCCTTTGAAAATGGCAATGTTGAGTTTGGAGGCAGCTTCGGGGAGTTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000114444.9 |
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| CDS-3UTR CCA 90 bp | TGTAAAAGAGAAACATGCAGTGTCGATGTTTTAATCCCAGTACTCTGGAGGCAGTGGAGGCATTTCTTCTaGCTCACTATCTTCATCTTC | + |
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Preference number: 4 (lower is better) Translates to: CKRETCSVDVLIPVLWRQWRHFF*LTIFIF Trigger: GAAGATGAAGATAGTGAGCCAGAAGAAATGCCTCCA...CTGCCTCCAGAGTACTGGGATTAAAACATCGACACTGCATGTTTCTCTTTTACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000122253.2 |
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| 3UTR CAA 72 bp | CAGTCACTAAATGTGCTTTTGAAACCACTGGTCAGGTaGTATGTACGTAAAATAAGCCTGGAGTTGGACAAG | + |
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Preference number: 4 (lower is better) Translates to: QSLNVLLKPLVR*YVRKISLELDK Trigger: CTTGTCCAACTCCAGGCTTATTTTACGTACATACAACCTGACCAGTGGTTTCAAAAGCACATTTAGTGACTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000114444.9 ENSMUST00000125040.8 |
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| CDS GCA 90 bp | CAGGTCCTCTGCAGCTGTCACCTACTGACCCAACAGTCTCTTCACTaGTTGCTAGAGTGTACAGCAGGAACTGAGATTGTGTGGCAGTAC | + |
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Preference number: 5 (lower is better) Translates to: QVLCSCHLLTQQSLH*LLECTAGTEIVWQY Trigger: GTACTGCCACACAATCTCAGTTCCTGCTGTACACTCTAGCAAGCAGTGAAGAGACTGTTGGGTCAGTAGGTGACAGCTGCAGAGGACCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096021.10 |
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| CDS-3UTR CAA 90 bp | GAAGGTCCTCAACGGAGACACACTCCGTTAGAGTGGGCTAGTCATAATACTCAATTGGTCCCGCTGATGTaGGTGTGTCCCTTCCAATGT | + |
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Preference number: 5 (lower is better) Translates to: EGPQRRHTPLEWASHNTQLVPLM*VCPFQC Trigger: ACATTGGAAGGGACACACCAACATCAGCGGGACCAA...TTGAGTATTATGACTAGCCCACTCTAACGGAGTGTGTCTCCGTTGAGGACCTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114444.9 |
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| CDS-3UTR CAA 90 bp | ACTATGCAGTCCTGGGTTGTGGAACTCTGGGTTGTTGGTGACATCACTAGTCTTTTGGTCCCGCTGATGTaGGTGTGTCCCTTCCAATGT | + |
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Preference number: 5 (lower is better) Translates to: TMQSWVVELWVVGDITSLLVPLM*VCPFQC Trigger: ACATTGGAAGGGACACACCAACATCAGCGGGACCAA...AAGACTAGTGATGTCACCAACAACCCAGAGTTCCACAACCCAGGACTGCATAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119981.8 |
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| CDS-3UTR CAA 90 bp | GATGGGAGCAGCAACCTCAAAAAGCATCTTTACAAGAAGATACCTCTGCAGCTGCAGCAGGAACTGAGATaGTGTGGCAGTACAAGAGGC | + |
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Preference number: 5 (lower is better) Translates to: DGSSNLKKHLYKKIPLQLQQELR*CGSTRG Trigger: GCCTCTTGTACTGCCACACAATCTCAGTTCCTGCTG...CAGCTGCAGAGGTATCTTCTTGTAAAGATGCTTTTTGAGGTTGCTGCTCCCATC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000130818.8 |
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| CDS CAA 90 bp | GTCCTCTGCAGCTGTCACCTACTGACCCAACAGTCTCTTCACTGCTaGCTAGAGTGTACAGCAGGAACTGAGATTGTGTGGCAGTACAAG | + |
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Preference number: 6 (lower is better) Translates to: VLCSCHLLTQQSLHC*LECTAGTEIVWQYK Trigger: CTTGTACTGCCACACAATCTCAGTTCCTGCTGTACACTCTAGCAAGCAGTGAAGAGACTGTTGGGTCAGTAGGTGACAGCTGCAGAGGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096021.10 |
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| CDS GCA 72 bp | TGCAGCTGTCACCTACTGACCCAACAGTCTCTTCACTaGTTGCTAGAGTGTACAGCAGGAACTGAGATTGTG | + |
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Preference number: 6 (lower is better) Translates to: CSCHLLTQQSLH*LLECTAGTEIV Trigger: CACAATCTCAGTTCCTGCTGTACACTCTAGCAAGCAGTGAAGAGACTGTTGGGTCAGTAGGTGACAGCTGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096021.10 |
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| CDS CAA 72 bp | AGCTGTCACCTACTGACCCAACAGTCTCTTCACTGCTaGCTAGAGTGTACAGCAGGAACTGAGATTGTGTGG | + |
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Preference number: 6 (lower is better) Translates to: SCHLLTQQSLHC*LECTAGTEIVW Trigger: CCACACAATCTCAGTTCCTGCTGTACACTCTAGCAAGCAGTGAAGAGACTGTTGGGTCAGTAGGTGACAGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096021.10 |
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