Pregenerated sensors for PCNA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027342Ensembl transcript IDs: ENSMUST00000028817.7
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | GAAAAGACCTCAGGACACGCTGGCATCTCAGGAGCAATCTTCAAAGGTTTAGTTTCACGCCGCCCGAGCTaGCGTCCCAGCAGGCCTCAT | + |
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Preference number: 4 (lower is better) Translates to: EKTSGHAGISGAIFKGLVSRRPS*RPSRPH Trigger: ATGAGGCCTGCTGGGACGTCAGCTCGGGCGGCGTGA...AACTAAACCTTTGAAGATTGCTCCTGAGATGCCAGCGTGTCCTGAGGTCTTTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028817.7 |
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| CDS-3UTR GCA 90 bp | GAAAAGACCTCAGGACACGCTGGCATCTCAGGAGCAATCTTCAAAGGTTTAGTTGTCTCGGCATATACGTaGAAATTCACCCGACGGCAT | + |
|
Preference number: 4 (lower is better) Translates to: EKTSGHAGISGAIFKGLVVSAYT*KFTRRH Trigger: ATGCCGTCGGGTGAATTTGCACGTATATGCCGAGAC...AACTAAACCTTTGAAGATTGCTCCTGAGATGCCAGCGTGTCCTGAGGTCTTTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028817.7 |
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| CDS-3UTR CCA 90 bp | AGAAAAGACCTCAGGACACGCTGGCATCTCAGGAGCAATCTTCAAAGGTTTAGTGCTGTACTCCTGTTCTaGGATTCCAAGTTGCTCCAC | + |
|
Preference number: 4 (lower is better) Translates to: RKDLRTRWHLRSNLQRFSAVLLF*DSKLLH Trigger: GTGGAGCAACTTGGAATCCCAGAACAGGAGTACAGC...ACTAAACCTTTGAAGATTGCTCCTGAGATGCCAGCGTGTCCTGAGGTCTTTTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028817.7 |
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| CDS-3UTR GCA 90 bp | GAAAAGACCTCAGGACACGCTGGCATCTCAGGAGCAATCTTCAAAGGTTTAGTTGCCAAGCTCTCCACTTaGAGAAAACTTCACCCCATT | + |
|
Preference number: 4 (lower is better) Translates to: EKTSGHAGISGAIFKGLVAKLST*RKLHPI Trigger: AATGGGGTGAAGTTTTCTGCAAGTGGAGAGCTTGGC...AACTAAACCTTTGAAGATTGCTCCTGAGATGCCAGCGTGTCCTGAGGTCTTTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028817.7 |
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| CDS-3UTR GCA 90 bp | AGAAAAGACCTCAGGACACGCTGGCATCTCAGGAGCAATCTTCAAAGGTTTAGTCTTCACCCCATTCTTTaGACAGGATATCACAACAGC | + |
|
Preference number: 4 (lower is better) Translates to: RKDLRTRWHLRSNLQRFSLHPIL*TGYHNS Trigger: GCTGTTGTGATATCCTGTGCAAAGAATGGGGTGAAG...ACTAAACCTTTGAAGATTGCTCCTGAGATGCCAGCGTGTCCTGAGGTCTTTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028817.7 |
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| CDS-3UTR CCA 90 bp | GAAAAGACCTCAGGACACGCTGGCATCTCAGGAGCAATCTTCAAAGGTTTAGTTGCTCATTCATCTCTATaGTTACCGCCTCCTCTTCTT | + |
|
Preference number: 4 (lower is better) Translates to: EKTSGHAGISGAIFKGLVAHSSL*LPPPLL Trigger: AAGAAGAGGAGGCGGTAACCATAGAGATGAATGAGC...AACTAAACCTTTGAAGATTGCTCCTGAGATGCCAGCGTGTCCTGAGGTCTTTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028817.7 |
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| CDS-3UTR GCA 90 bp | AGAAAAGACCTCAGGACACGCTGGCATCTCAGGAGCAATCTTCAAAGGTTTAGTTCTGGGATTCCAAGTTaGTCCACATCTAAGTCCATT | + |
|
Preference number: 4 (lower is better) Translates to: RKDLRTRWHLRSNLQRFSSGIPS*STSKSI Trigger: AATGGACTTAGATGTGGAGCAACTTGGAATCCCAGA...ACTAAACCTTTGAAGATTGCTCCTGAGATGCCAGCGTGTCCTGAGGTCTTTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028817.7 |
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| CDS-3UTR CCA 90 bp | GAAAAGACCTCAGGACACGCTGGCATCTCAGGAGCAATCTTCAAAGGTTTAGTTTACTGTAGGAGACAGTaGAGTGGCTTTTGTGAAAAA | + |
|
Preference number: 4 (lower is better) Translates to: EKTSGHAGISGAIFKGLVYCRRQ*SGFCEK Trigger: TTTTTCACAAAAGCCACTCCACTGTCTCCTACAGTA...AACTAAACCTTTGAAGATTGCTCCTGAGATGCCAGCGTGTCCTGAGGTCTTTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028817.7 |
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| CDS-3UTR TCA 90 bp | AGAAAAGACCTCAGGACACGCTGGCATCTCAGGAGCAATCTTCAAAGGTTTAGTTCTGAAACTTTCTCTTaGTTTGGTGCTTCGAATACT | + |
|
Preference number: 4 (lower is better) Translates to: RKDLRTRWHLRSNLQRFSSETFS*FGASNT Trigger: AGTATTCGAAGCACCAAATCAAGAGAAAGTTTCAGA...ACTAAACCTTTGAAGATTGCTCCTGAGATGCCAGCGTGTCCTGAGGTCTTTTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028817.7 |
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| CDS-3UTR CAA 90 bp | GAAAAGACCTCAGGACACGCTGGCATCTCAGGAGCAATCTTCAAAGGTTTAGTTAACTTAATGTTCCCATaGCCAAGCTCTCCACTTGCA | + |
|
Preference number: 5 (lower is better) Translates to: EKTSGHAGISGAIFKGLVNLMFP*PSSPLA Trigger: TGCAAGTGGAGAGCTTGGCAATGGGAACATTAAGTT...AACTAAACCTTTGAAGATTGCTCCTGAGATGCCAGCGTGTCCTGAGGTCTTTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028817.7 |
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| CDS-3UTR CAA 90 bp | AGAAAAGACCTCAGGACACGCTGGCATCTCAGGAGCAATCTTCAAAGGTTTAGTAAACTTTCTCTTGATTaGGTGCTTCGAATACTAGTG | + |
|
Preference number: 5 (lower is better) Translates to: RKDLRTRWHLRSNLQRFSKLSLD*VLRILV Trigger: CACTAGTATTCGAAGCACCAAATCAAGAGAAAGTTT...ACTAAACCTTTGAAGATTGCTCCTGAGATGCCAGCGTGTCCTGAGGTCTTTTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028817.7 |
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