Pregenerated sensors for PCMTD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000051285Ensembl transcript IDs: ENSMUST00000061280.17, ENSMUST00000182675.8
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTTCCAGGACCATACTTTATCCAGGCCTGCCTTAAGCCTACCTCCTaGTCCTTGACTGAATTCTTCTCAATCCAAAGCTCCTGTGAATAC | + |
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Preference number: 1 (lower is better) Translates to: LPGPYFIQACLKPTS*SLTEFFSIQSSCEY Trigger: GTATTCACAGGAGCTTTGGATTGAGAAGAATTCAGTCAAGGAGCAGGAGGTAGGCTTAAGGCAGGCCTGGATAAAGTATGGTCCTGGAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| 3UTR TCA 90 bp | TCCCCCTGCTGCTGGAGGTCCCTAAGCAGTGCTGATCACTTAATGTaGCTTATTCACAGTCTGCATTTAGAAGCAAATGGGACAGTGAAT | + |
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Preference number: 1 (lower is better) Translates to: SPCCWRSLSSADHLM*LIHSLHLEANGTVN Trigger: ATTCACTGTCCCATTTGCTTCTAAATGCAGACTGTGAATAAGTCACATTAAGTGATCAGCACTGCTTAGGGACCTCCAGCAGCAGGGGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| 3UTR TCA 90 bp | AGATGCCTTAAATTTGTAATCCTCCTGCCTCAGCTTCTCAAGCCCTaGCCACAGGCAGTAGCCATCACATATGGCTTACTTTCACTTACA | + |
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Preference number: 1 (lower is better) Translates to: RCLKFVILLPQLLKP*PQAVAITYGLLSLT Trigger: TGTAAGTGAAAGTAAGCCATATGTGATGGCTACTGCCTGTGGTCAGGGCTTGAGAAGCTGAGGCAGGAGGATTACAAATTTAAGGCATCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| 3UTR TCA 90 bp | CTGATCATATCATTCCCCCTGCTGCTGGAGGTCCCTAAGCAGTGCTaGTCACTTAATGTGACTTATTCACAGTCTGCATTTAGAAGCAAA | + |
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Preference number: 1 (lower is better) Translates to: LIISFPLLLEVPKQC*SLNVTYSQSAFRSK Trigger: TTTGCTTCTAAATGCAGACTGTGAATAAGTCACATTAAGTGATCAGCACTGCTTAGGGACCTCCAGCAGCAGGGGGAATGATATGATCAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| 3UTR-3UTR TCA 90 bp | CCGGTCTTACTCTGTGGTCCAGATGGGCTTCAAAGTCCCTCTGAAACCACAGATAAGATTCAGAGCAGATaGGGCCAGTGTGGCCTACCT | + |
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Preference number: 2 (lower is better) Translates to: PVLLCGPDGLQSPSETTDKIQSR*GQCGLP Trigger: AGGTAGGCCACACTGGCCTCATCTGCTCTGAATCTT...ATCTGTGGTTTCAGAGGGACTTTGAAGCCCATCTGGACCACAGAGTAAGACCGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| 3UTR-3UTR GCA 90 bp | CCGGTCTTACTCTGTGGTCCAGATGGGCTTCAAAGTCCCTCTGAAACCACAGATTATCATTCCCCCTGCTaGTGGAGGTCCCTAAGCAGT | + |
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Preference number: 2 (lower is better) Translates to: PVLLCGPDGLQSPSETTDYHSPC*WRSLSS Trigger: ACTGCTTAGGGACCTCCAGCAGCAGGGGGAATGATA...ATCTGTGGTTTCAGAGGGACTTTGAAGCCCATCTGGACCACAGAGTAAGACCGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| 3UTR-3UTR CCA 90 bp | TTTAAATTAGACCCTTGGCAGCTATGGTGTTGCTCCCAGATCCTGGGGATTTCACATTCCCCCTGCTGCTaGAGGTCCCTAAGCAGTGCT | + |
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Preference number: 2 (lower is better) Translates to: FKLDPWQLWCCSQILGISHSPCC*RSLSSA Trigger: AGCACTGCTTAGGGACCTCCAGCAGCAGGGGGAATG...TGAAATCCCCAGGATCTGGGAGCAACACCATAGCTGCCAAGGGTCTAATTTAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| 3UTR-3UTR TCA 90 bp | GTGGTTCCTCGCGCTTCATGGCTTCGATGTGCTCTTTCTCCTCTTCTTCTTTGCCTGTCAGAAGCTATCTaGAGGCAATTACCCACCACA | + |
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Preference number: 2 (lower is better) Translates to: VVPRASWLRCALSPLLLCLSEAI*RQLPTT Trigger: TGTGGTGGGTAATTGCCTTCAGATAGCTTCTGACAG...GCAAAGAAGAAGAGGAGAAAGAGCACATCGAAGCCATGAAGCGCGAGGAACCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000182675.8 |
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| 3UTR-3UTR GCA 90 bp | GTGGTTCCTCGCGCTTCATGGCTTCGATGTGCTCTTTCTCCTCTTCTTCTTTGCTCACAGCAGGGACCTTaGCAACTTGCCCATTTAATT | + |
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Preference number: 2 (lower is better) Translates to: VVPRASWLRCALSPLLLCSQQGP*QLAHLI Trigger: AATTAAATGGGCAAGTTGGCAAGGTCCCTGCTGTGA...GCAAAGAAGAAGAGGAGAAAGAGCACATCGAAGCCATGAAGCGCGAGGAACCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000182675.8 |
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| 3UTR-3UTR TCA 90 bp | CCGGTCTTACTCTGTGGTCCAGATGGGCTTCAAAGTCCCTCTGAAACCACAGATGTCCCTAAGCAGTGCTaGTCACTTAATGTGACTTAT | + |
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Preference number: 2 (lower is better) Translates to: PVLLCGPDGLQSPSETTDVPKQC*SLNVTY Trigger: ATAAGTCACATTAAGTGATCAGCACTGCTTAGGGAC...ATCTGTGGTTTCAGAGGGACTTTGAAGCCCATCTGGACCACAGAGTAAGACCGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| 3UTR-3UTR TCA 90 bp | CCGGTCTTACTCTGTGGTCCAGATGGGCTTCAAAGTCCCTCTGAAACCACAGATCTAAAATGTCTCTACTaGTCATATCATTCCCCCTGC | + |
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Preference number: 2 (lower is better) Translates to: PVLLCGPDGLQSPSETTDLKCLY*SYHSPC Trigger: GCAGGGGGAATGATATGATCAGTAGAGACATTTTAG...ATCTGTGGTTTCAGAGGGACTTTGAAGCCCATCTGGACCACAGAGTAAGACCGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| 3UTR-3UTR CCA 90 bp | TTTAAATTAGACCCTTGGCAGCTATGGTGTTGCTCCCAGATCCTGGGGATTTCAATGACATGCACTGCCTaGTGTATCACTGATACCCTA | + |
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Preference number: 2 (lower is better) Translates to: FKLDPWQLWCCSQILGISMTCTA*CITDTL Trigger: TAGGGTATCAGTGATACACCAGGCAGTGCATGTCAT...TGAAATCCCCAGGATCTGGGAGCAACACCATAGCTGCCAAGGGTCTAATTTAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| 3UTR-3UTR CCA 90 bp | ATCATACAGGCCCATTTCACAAGAGTCAAACGAATCCTTTCCATAACACTGTTGCAGATGAGGCCAGTGTaGCCTACCTTGTCAAAGATA | + |
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Preference number: 2 (lower is better) Translates to: IIQAHFTRVKRILSITLLQMRPV*PTLSKI Trigger: TATCTTTGACAAGGTAGGCCACACTGGCCTCATCTG...CAACAGTGTTATGGAAAGGATTCGTTTGACTCTTGTGAAATGGGCCTGTATGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| 3UTR-3UTR TCA 90 bp | TTTAAATTAGACCCTTGGCAGCTATGGTGTTGCTCCCAGATCCTGGGGATTTCAAACACTACAAATCCATaGAGAACCAGAAAGAGTACT | + |
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Preference number: 2 (lower is better) Translates to: FKLDPWQLWCCSQILGISNTTNP*RTRKST Trigger: AGTACTCTTTCTGGTTCTTCATGGATTTGTAGTGTT...TGAAATCCCCAGGATCTGGGAGCAACACCATAGCTGCCAAGGGTCTAATTTAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| 3UTR CAA 90 bp | TCTTCTTCTTCAGATGGACAGATGATTTCATTCACAGCAGGGACCTaGCCAACTTGCCCATTTAATTCTTTTGAAAAGCAGCTAGGAGAT | + |
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Preference number: 2 (lower is better) Translates to: SSSSDGQMISFTAGT*PTCPFNSFEKQLGD Trigger: ATCTCCTAGCTGCTTTTCAAAAGAATTAAATGGGCAAGTTGGCAAGGTCCCTGCTGTGAATGAAATCATCTGTCCATCTGAAGAAGAAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000182675.8 |
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| 3UTR-3UTR TCA 90 bp | CAAGAAAGATCTCCACTTTCAACTCTACTTAATATAGAATCGAAAAGGCTTAGCCTCCAATCTGCAGCATaGCTTAAGCCCCACACACAT | + |
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Preference number: 2 (lower is better) Translates to: QERSPLSTLLNIESKRLSLQSAA*LKPHTH Trigger: ATGTGTGTGGGGCTTAAGTCATGCTGCAGATTGGAG...GCTAAGCCTTTTCGATTCTATATTAAGTAGAGTTGAAAGTGGAGATCTTTCTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| 3UTR-3UTR GCA 90 bp | AATTACCCACCACAAATGCGGGTTCACAGAATTCAAATCTTAGCAGTGGTTTTCGGGACCTTGCCAACTTaGCCATTTAATTCTTTTGAA | + |
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Preference number: 2 (lower is better) Translates to: NYPPQMRVHRIQILAVVFGTLPT*PFNSFE Trigger: TTCAAAAGAATTAAATGGGCAAGTTGGCAAGGTCCC...GAAAACCACTGCTAAGATTTGAATTCTGTGAACCCGCATTTGTGGTGGGTAATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000182675.8 |
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| 3UTR-3UTR TCA 90 bp | CAAGAAAGATCTCCACTTTCAACTCTACTTAATATAGAATCGAAAAGGCTTAGCCTCCTGCTCCTTGACTaGATTCTTCTCAATCCAAAG | + |
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Preference number: 2 (lower is better) Translates to: QERSPLSTLLNIESKRLSLLLLD*ILLNPK Trigger: CTTTGGATTGAGAAGAATTCAGTCAAGGAGCAGGAG...GCTAAGCCTTTTCGATTCTATATTAAGTAGAGTTGAAAGTGGAGATCTTTCTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| 3UTR-3UTR CCA 90 bp | CAAGAAAGATCTCCACTTTCAACTCTACTTAATATAGAATCGAAAAGGCTTAGCCCAGATAAGACTATGTaGGTATCAGGAGTTCAAGAT | + |
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Preference number: 2 (lower is better) Translates to: QERSPLSTLLNIESKRLSPDKTM*VSGVQD Trigger: ATCTTGAACTCCTGATACCCACATAGTCTTATCTGG...GCTAAGCCTTTTCGATTCTATATTAAGTAGAGTTGAAAGTGGAGATCTTTCTTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| 3UTR-3UTR CCA 90 bp | AGTAAATTCGATCATACTGATGACTGTCAGAAGCTATCTGAAGGCAATTACCCAATCTTCTTCTTCAGATaGACAGATGATTTCATTCAC | + |
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Preference number: 2 (lower is better) Translates to: SKFDHTDDCQKLSEGNYPIFFFR*TDDFIH Trigger: GTGAATGAAATCATCTGTCCATCTGAAGAAGAAGAT...TGGGTAATTGCCTTCAGATAGCTTCTGACAGTCATCAGTATGATCGAATTTACT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000182675.8 |
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| 3UTR-3UTR TCA 90 bp | CAAGAAAGATCTCCACTTTCAACTCTACTTAATATAGAATCGAAAAGGCTTAGCTTTGTTTATGTTCTCTaGAGAACAAAAGCCGGTCTT | + |
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Preference number: 2 (lower is better) Translates to: QERSPLSTLLNIESKRLSFVYVL*RTKAGL Trigger: AAGACCGGCTTTTGTTCTTCAGAGAACATAAACAAA...GCTAAGCCTTTTCGATTCTATATTAAGTAGAGTTGAAAGTGGAGATCTTTCTTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| 3UTR TCA 72 bp | CGATGTTCCTTCAGGCCCTGTCTCCAATCTGCAGCATaGCTTAAGCCCCACACACATCCATTCAAGCCCTCT | + |
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Preference number: 3 (lower is better) Translates to: RCSFRPCLQSAA*LKPHTHPFKPS Trigger: AGAGGGCTTGAATGGATGTGTGTGGGGCTTAAGTCATGCTGCAGATTGGAGACAGGGCCTGAAGGAACATCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| 3UTR TCA 72 bp | AGCTATGGTGTTGCTCCCAGATCCTGGGGATTTCAGTaGTGGTCGATGTTCCTTCAGGCCCTGTCTCCAATC | + |
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Preference number: 3 (lower is better) Translates to: SYGVAPRSWGFQ*WSMFLQALSPI Trigger: GATTGGAGACAGGGCCTGAAGGAACATCGACCATCACTGAAATCCCCAGGATCTGGGAGCAACACCATAGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| 3UTR CCA 72 bp | CCCTCAGTAGGTTCTGAGGTGGTTCCTCGCGCTTCATaGCTTCGATGTGCTCTTTCTCCTCTTCTTCTTTGC | + |
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Preference number: 3 (lower is better) Translates to: PSVGSEVVPRAS*LRCALSPLLLC Trigger: GCAAAGAAGAAGAGGAGAAAGAGCACATCGAAGCCATGAAGCGCGAGGAACCACCTCAGAACCTACTGAGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000182675.8 |
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| 3UTR GCA 72 bp | TTGGGACATCTTCCAGGACCATACTTTATCCAGGCCTaGCTTAAGCCTACCTCCTGCTCCTTGACTGAATTC | + |
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Preference number: 3 (lower is better) Translates to: LGHLPGPYFIQA*LKPTSCSLTEF Trigger: GAATTCAGTCAAGGAGCAGGAGGTAGGCTTAAGGCAGGCCTGGATAAAGTATGGTCCTGGAAGATGTCCCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| 3UTR-3UTR CAA 90 bp | GTGGTTCCTCGCGCTTCATGGCTTCGATGTGCTCTTTCTCCTCTTCTTCTTTGCACTTTCCCAAGTGTTTaGTCCAGTCCGCATAATCTG | + |
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Preference number: 3 (lower is better) Translates to: VVPRASWLRCALSPLLLCTFPSV*SSPHNL Trigger: CAGATTATGCGGACTGGACAAAACACTTGGGAAAGT...GCAAAGAAGAAGAGGAGAAAGAGCACATCGAAGCCATGAAGCGCGAGGAACCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000182675.8 |
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| 3UTR TCA 72 bp | TCATTCCCCCTGCTGCTGGAGGTCCCTAAGCAGTGCTaGTCACTTAATGTGACTTATTCACAGTCTGCATTT | + |
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Preference number: 3 (lower is better) Translates to: SFPLLLEVPKQC*SLNVTYSQSAF Trigger: AAATGCAGACTGTGAATAAGTCACATTAAGTGATCAGCACTGCTTAGGGACCTCCAGCAGCAGGGGGAATGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| 3UTR TCA 72 bp | TTATCCAGGCCTGCCTTAAGCCTACCTCCTGCTCCTTaGCTGAATTCTTCTCAATCCAAAGCTCCTGTGAAT | + |
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Preference number: 3 (lower is better) Translates to: LSRPALSLPPAP*LNSSQSKAPVN Trigger: ATTCACAGGAGCTTTGGATTGAGAAGAATTCAGTCAAGGAGCAGGAGGTAGGCTTAAGGCAGGCCTGGATAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| 3UTR GCA 72 bp | GACAGATTTAAATTAGACCCTTGGCAGCTATGGTGTTaGTCCCAGATCCTGGGGATTTCAGTGATGGTCGAT | + |
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Preference number: 3 (lower is better) Translates to: DRFKLDPWQLWC*SQILGISVMVD Trigger: ATCGACCATCACTGAAATCCCCAGGATCTGGGAGCAACACCATAGCTGCCAAGGGTCTAATTTAAATCTGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| 3UTR TCA 72 bp | CTTACTCTGTGGTCCAGATGGGCTTCAAAGTCCCTCTaGAACCACAGATGCCTTAAATTTGTAATCCTCCTG | + |
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Preference number: 3 (lower is better) Translates to: LTLWSRWASKSL*NHRCLKFVILL Trigger: CAGGAGGATTACAAATTTAAGGCATCTGTGGTTTCAGAGGGACTTTGAAGCCCATCTGGACCACAGAGTAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| 3UTR-3UTR CAA 90 bp | TTTAAATTAGACCCTTGGCAGCTATGGTGTTGCTCCCAGATCCTGGGGATTTCATATCTTGAATTAGTATaGCACTCATACGTTGCCCGG | + |
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Preference number: 3 (lower is better) Translates to: FKLDPWQLWCCSQILGISYLELV*HSYVAR Trigger: CCGGGCAACGTATGAGTGCAATACTAATTCAAGATA...TGAAATCCCCAGGATCTGGGAGCAACACCATAGCTGCCAAGGGTCTAATTTAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| 3UTR-3UTR CAA 90 bp | TTTAAATTAGACCCTTGGCAGCTATGGTGTTGCTCCCAGATCCTGGGGATTTCACCAGTGTGGCCTACCTaGTCAAAGATAAATATCTAC | + |
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Preference number: 3 (lower is better) Translates to: FKLDPWQLWCCSQILGISPVWPT*SKINIY Trigger: GTAGATATTTATCTTTGACAAGGTAGGCCACACTGG...TGAAATCCCCAGGATCTGGGAGCAACACCATAGCTGCCAAGGGTCTAATTTAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| 3UTR TCA 72 bp | GATCACTGCTTGTTCTTGTCTCCTATGCAGCCATACTaGGTTCTTATCAATGCTCAGTTCTTTAAGTCCGGT | + |
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Preference number: 3 (lower is better) Translates to: DHCLFLSPMQPY*VLINAQFFKSG Trigger: ACCGGACTTAAAGAACTGAGCATTGATAAGAACTCAGTATGGCTGCATAGGAGACAAGAACAAGCAGTGATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| 3UTR-3UTR CAA 90 bp | TTTAAATTAGACCCTTGGCAGCTATGGTGTTGCTCCCAGATCCTGGGGATTTCATCTAATGCATCCGAGTaGATAGATAAGATAGCTTTC | + |
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Preference number: 3 (lower is better) Translates to: FKLDPWQLWCCSQILGISSNASE*IDKIAF Trigger: GAAAGCTATCTTATCTATCAACTCGGATGCATTAGA...TGAAATCCCCAGGATCTGGGAGCAACACCATAGCTGCCAAGGGTCTAATTTAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| 3UTR TCA 72 bp | AAAGCTCCTGTGAATACAGTAAAGGCAAGACAGGTGTaGATCACTAGATCACTGCTTGTTCTTGTCTCCTAT | + |
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Preference number: 3 (lower is better) Translates to: KAPVNTVKARQV*ITRSLLVLVSY Trigger: ATAGGAGACAAGAACAAGCAGTGATCTAGTGATTCACACCTGTCTTGCCTTTACTGTATTCACAGGAGCTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| 3UTR-3UTR CAA 90 bp | CAAGAAAGATCTCCACTTTCAACTCTACTTAATATAGAATCGAAAAGGCTTAGCTCATTTGTAGAGTGCTaGCCTAGCATGCAAGAGGTC | + |
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Preference number: 3 (lower is better) Translates to: QERSPLSTLLNIESKRLSSFVEC*PSMQEV Trigger: GACCTCTTGCATGCTAGGCAAGCACTCTACAAATGA...GCTAAGCCTTTTCGATTCTATATTAAGTAGAGTTGAAAGTGGAGATCTTTCTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| 3UTR-3UTR CAA 90 bp | CAAGAAAGATCTCCACTTTCAACTCTACTTAATATAGAATCGAAAAGGCTTAGCCCTACCTCCTGCTCCTaGACTGAATTCTTCTCAATC | + |
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Preference number: 3 (lower is better) Translates to: QERSPLSTLLNIESKRLSPTSCS*TEFFSI Trigger: GATTGAGAAGAATTCAGTCAAGGAGCAGGAGGTAGG...GCTAAGCCTTTTCGATTCTATATTAAGTAGAGTTGAAAGTGGAGATCTTTCTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| 3UTR CCA 72 bp | CTATATATGGCAAACCATTCAGGCACATCATTTTTATaGGAGAGCTCAGCATTTCCACTACTAAGAACTCAA | + |
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Preference number: 3 (lower is better) Translates to: LYMANHSGTSFL*ESSAFPLLRTQ Trigger: TTGAGTTCTTAGTAGTGGAAATGCTGAGCTCTCCCATAAAAATGATGTGCCTGAATGGTTTGCCATATATAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| CDS-3UTR CCA 90 bp | TTTAAATTAGACCCTTGGCAGCTATGGTGTTGCTCCCAGATCCTGGGGATTTCAATTCCTGACAGCACATaGAGGGAGCCCCACAGAGTC | + |
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Preference number: 4 (lower is better) Translates to: FKLDPWQLWCCSQILGISIPDST*REPHRV Trigger: GACTCTGTGGGGCTCCCTCCATGTGCTGTCAGGAAT...TGAAATCCCCAGGATCTGGGAGCAACACCATAGCTGCCAAGGGTCTAATTTAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| CDS-3UTR TCA 90 bp | TTTAAATTAGACCCTTGGCAGCTATGGTGTTGCTCCCAGATCCTGGGGATTTCACGCGGTCAATGGCTCTaGAGGCTTGCTCTACTCTTT | + |
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Preference number: 4 (lower is better) Translates to: FKLDPWQLWCCSQILGISRGQWL*RLALLF Trigger: AAAGAGTAGAGCAAGCCTTCAGAGCCATTGACCGCG...TGAAATCCCCAGGATCTGGGAGCAACACCATAGCTGCCAAGGGTCTAATTTAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| CDS-3UTR TCA 90 bp | GTGGTTCCTCGCGCTTCATGGCTTCGATGTGCTCTTTCTCCTCTTCTTCTTTGCATACTCCACCACATCTaGATGAAGTTCAATCCCATG | + |
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Preference number: 4 (lower is better) Translates to: VVPRASWLRCALSPLLLCILHHI*MKFNPM Trigger: CATGGGATTGAACTTCATTCAGATGTGGTGGAGTAT...GCAAAGAAGAAGAGGAGAAAGAGCACATCGAAGCCATGAAGCGCGAGGAACCAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000182675.8 |
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| CDS-3UTR GCA 90 bp | CCGGTCTTACTCTGTGGTCCAGATGGGCTTCAAAGTCCCTCTGAAACCACAGATTTCATGGCTTCGATGTaGTCTTTCTCCTCTTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: PVLLCGPDGLQSPSETTDFMASM*SFSSSS Trigger: AGAAGAAGAGGAGAAAGAGCACATCGAAGCCATGAA...ATCTGTGGTTTCAGAGGGACTTTGAAGCCCATCTGGACCACAGAGTAAGACCGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| CDS-3UTR TCA 90 bp | TTTAAATTAGACCCTTGGCAGCTATGGTGTTGCTCCCAGATCCTGGGGATTTCACTGTCAGAAGCTATCTaGAGGCAATTACCCACCACA | + |
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Preference number: 4 (lower is better) Translates to: FKLDPWQLWCCSQILGISLSEAI*RQLPTT Trigger: TGTGGTGGGTAATTGCCTTCAGATAGCTTCTGACAG...TGAAATCCCCAGGATCTGGGAGCAACACCATAGCTGCCAAGGGTCTAATTTAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| CDS-3UTR GCA 90 bp | TTTAAATTAGACCCTTGGCAGCTATGGTGTTGCTCCCAGATCCTGGGGATTTCAATGGCTCTGAAGGCTTaGTCTACTCTTTCAGTTCGG | + |
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Preference number: 4 (lower is better) Translates to: FKLDPWQLWCCSQILGISMALKA*STLSVR Trigger: CCGAACTGAAAGAGTAGAGCAAGCCTTCAGAGCCAT...TGAAATCCCCAGGATCTGGGAGCAACACCATAGCTGCCAAGGGTCTAATTTAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| 3UTR CAA 72 bp | TTTATCCAGGCCTGCCTTAAGCCTACCTCCTGCTCCTaGACTGAATTCTTCTCAATCCAAAGCTCCTGTGAA | + |
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Preference number: 4 (lower is better) Translates to: FIQACLKPTSCS*TEFFSIQSSCE Trigger: TTCACAGGAGCTTTGGATTGAGAAGAATTCAGTCAAGGAGCAGGAGGTAGGCTTAAGGCAGGCCTGGATAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| CDS-3UTR TCA 90 bp | TTTAAATTAGACCCTTGGCAGCTATGGTGTTGCTCCCAGATCCTGGGGATTTCAATACTCCACCACATCTaGATGAAGTTCAATCCCATG | + |
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Preference number: 4 (lower is better) Translates to: FKLDPWQLWCCSQILGISILHHI*MKFNPM Trigger: CATGGGATTGAACTTCATTCAGATGTGGTGGAGTAT...TGAAATCCCCAGGATCTGGGAGCAACACCATAGCTGCCAAGGGTCTAATTTAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| CDS-3UTR TCA 90 bp | CAAGAAAGATCTCCACTTTCAACTCTACTTAATATAGAATCGAAAAGGCTTAGCAGTCTTGGAGATTCCTaGCAGCACATGGAGGGAGCC | + |
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Preference number: 4 (lower is better) Translates to: QERSPLSTLLNIESKRLSSLGDS*QHMEGA Trigger: GGCTCCCTCCATGTGCTGTCAGGAATCTCCAAGACT...GCTAAGCCTTTTCGATTCTATATTAAGTAGAGTTGAAAGTGGAGATCTTTCTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| CDS-3UTR TCA 90 bp | ATCATACAGGCCCATTTCACAAGAGTCAAACGAATCCTTTCCATAACACTGTTGATAAATGCAAGGTGCTaGCAAGTGTATGTTCCCGTG | + |
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Preference number: 4 (lower is better) Translates to: IIQAHFTRVKRILSITLLINARC*QVYVPV Trigger: CACGGGAACATACACTTGTCAGCACCTTGCATTTAT...CAACAGTGTTATGGAAAGGATTCGTTTGACTCTTGTGAAATGGGCCTGTATGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| CDS-3UTR CCA 90 bp | ACTGTATACAAAGTTCTTACTATTGACCCATCCCACTTTGAGATCAAAACAGTATCTTTTCCTCTTGGGTaGAGCCCTTTGTGGAATCCC | + |
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Preference number: 4 (lower is better) Translates to: TVYKVLTIDPSHFEIKTVSFPLG*SPLWNP Trigger: GGGATTCCACAAAGGGCTCCACCCAAGAGGAAAAGA...TACTGTTTTGATCTCAAAGTGGGATGGGTCAATAGTAAGAACTTTGTATACAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| CDS-3UTR TCA 90 bp | ATCATACAGGCCCATTTCACAAGAGTCAAACGAATCCTTTCCATAACACTGTTGATATGCCCCCAACTTTaGGTAAGATCTTCATGTAGT | + |
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Preference number: 4 (lower is better) Translates to: IIQAHFTRVKRILSITLLICPQL*VRSSCS Trigger: ACTACATGAAGATCTTACTCAAAGTTGGGGGCATAT...CAACAGTGTTATGGAAAGGATTCGTTTGACTCTTGTGAAATGGGCCTGTATGAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| CDS-3UTR GCA 90 bp | ACTGTATACAAAGTTCTTACTATTGACCCATCCCACTTTGAGATCAAAACAGTAAAGTGTATGTTCCCGTaGTTCCAGGCTAAGTCTTTG | + |
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Preference number: 4 (lower is better) Translates to: TVYKVLTIDPSHFEIKTVKCMFP*FQAKSL Trigger: CAAAGACTTAGCCTGGAAGCACGGGAACATACACTT...TACTGTTTTGATCTCAAAGTGGGATGGGTCAATAGTAAGAACTTTGTATACAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| CDS-3UTR GCA 90 bp | ACTGTATACAAAGTTCTTACTATTGACCCATCCCACTTTGAGATCAAAACAGTAATTACCCACCACAAATaGGGGTTCACAGAATTCAAA | + |
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Preference number: 4 (lower is better) Translates to: TVYKVLTIDPSHFEIKTVITHHK*GFTEFK Trigger: TTTGAATTCTGTGAACCCGCATTTGTGGTGGGTAAT...TACTGTTTTGATCTCAAAGTGGGATGGGTCAATAGTAAGAACTTTGTATACAGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| CDS TCA 90 bp | TGTCTCGGTAGCCTTCCAGATAGTAATCTCCGCGGTCAATGGCTCTaGAGGCTTGCTCTACTCTTTCAGTTCGGATGTACTGAGCTTCTT | + |
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Preference number: 5 (lower is better) Translates to: CLGSLPDSNLRGQWL*RLALLFQFGCTELL Trigger: AAGAAGCTCAGTACATCCGAACTGAAAGAGTAGAGCAAGCCTTCAGAGCCATTGACCGCGGAGATTACTATCTGGAAGGCTACCGAGACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| CDS-3UTR CAA 90 bp | ATCATACAGGCCCATTTCACAAGAGTCAAACGAATCCTTTCCATAACACTGTTGAATGGCTCTGAAGGCTaGCTCTACTCTTTCAGTTCG | + |
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Preference number: 5 (lower is better) Translates to: IIQAHFTRVKRILSITLLNGSEG*LYSFSS Trigger: CGAACTGAAAGAGTAGAGCAAGCCTTCAGAGCCATT...CAACAGTGTTATGGAAAGGATTCGTTTGACTCTTGTGAAATGGGCCTGTATGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| CDS-3UTR CAA 90 bp | ATCATACAGGCCCATTTCACAAGAGTCAAACGAATCCTTTCCATAACACTGTTGCTCTCCAGTTTTTCCTaGGCATACTCCACCACATCT | + |
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Preference number: 5 (lower is better) Translates to: IIQAHFTRVKRILSITLLLSSFS*AYSTTS Trigger: AGATGTGGTGGAGTATGCCAAGGAAAAACTGGAGAG...CAACAGTGTTATGGAAAGGATTCGTTTGACTCTTGTGAAATGGGCCTGTATGAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| CDS TCA 90 bp | TCAATGGCTCTGAAGGCTTGCTCTACTCTTTCAGTTCGGATGTACTaGGCTTCTTTAAGGTTATCAATTAAGTCATCATTATCTTCCCCA | + |
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Preference number: 5 (lower is better) Translates to: SMALKACSTLSVRMY*ASLRLSIKSSLSSP Trigger: TGGGGAAGATAATGATGACTTAATTGATAACCTTAAAGAAGCTCAGTACATCCGAACTGAAAGAGTAGAGCAAGCCTTCAGAGCCATTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| CDS-3UTR CAA 90 bp | ATTCAAATCTTAGCAGTGGTTTTCTTTAGAGGTGCATGTTGGATTATCTTCTTCCTCTCCAGTTTTTCCTaGGCATACTCCACCACATCT | + |
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Preference number: 5 (lower is better) Translates to: IQILAVVFFRGACWIIFFLSSFS*AYSTTS Trigger: AGATGTGGTGGAGTATGCCAAGGAAAAACTGGAGAG...GAAGAAGATAATCCAACATGCACCTCTAAAGAAAACCACTGCTAAGATTTGAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000182675.8 |
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| CDS-3UTR CAA 90 bp | CAAGAAAGATCTCCACTTTCAACTCTACTTAATATAGAATCGAAAAGGCTTAGCACTTTCCCAAGTGTTTaGTCCAGTCCGCATAATCTG | + |
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Preference number: 5 (lower is better) Translates to: QERSPLSTLLNIESKRLSTFPSV*SSPHNL Trigger: CAGATTATGCGGACTGGACAAAACACTTGGGAAAGT...GCTAAGCCTTTTCGATTCTATATTAAGTAGAGTTGAAAGTGGAGATCTTTCTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| CDS-3UTR CAA 90 bp | ACTGTATACAAAGTTCTTACTATTGACCCATCCCACTTTGAGATCAAAACAGTAAAATTAAGCCCACCATaGTACTTAAATATCCGGTTC | + |
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Preference number: 5 (lower is better) Translates to: TVYKVLTIDPSHFEIKTVKLSPP*YLNIRF Trigger: GAACCGGATATTTAAGTACAATGGTGGGCTTAATTT...TACTGTTTTGATCTCAAAGTGGGATGGGTCAATAGTAAGAACTTTGTATACAGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| CDS TCA 72 bp | AGCCTTCCAGATAGTAATCTCCGCGGTCAATGGCTCTaGAGGCTTGCTCTACTCTTTCAGTTCGGATGTACT | + |
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Preference number: 6 (lower is better) Translates to: SLPDSNLRGQWL*RLALLFQFGCT Trigger: AGTACATCCGAACTGAAAGAGTAGAGCAAGCCTTCAGAGCCATTGACCGCGGAGATTACTATCTGGAAGGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| CDS CAA 90 bp | GTAGCCTTCCAGATAGTAATCTCCGCGGTCAATGGCTCTGAAGGCTaGCTCTACTCTTTCAGTTCGGATGTACTGAGCTTCTTTAAGGTT | + |
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Preference number: 6 (lower is better) Translates to: VAFQIVISAVNGSEG*LYSFSSDVLSFFKV Trigger: AACCTTAAAGAAGCTCAGTACATCCGAACTGAAAGAGTAGAGCAAGCCTTCAGAGCCATTGACCGCGGAGATTACTATCTGGAAGGCTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| CDS TCA 72 bp | GCTCTCCAGTTTTTCCTTGGCATACTCCACCACATCTaGATGAAGTTCAATCCCATGATTTATTCCAAAAGG | + |
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Preference number: 6 (lower is better) Translates to: ALQFFLGILHHI*MKFNPMIYSKR Trigger: CCTTTTGGAATAAATCATGGGATTGAACTTCATTCAGATGTGGTGGAGTATGCCAAGGAAAAACTGGAGAGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000061280.17 ENSMUST00000182675.8 |
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| CDS GCA 72 bp | GTCAGAAGCTATCTGAAGGCAATTACCCACCACAAATaGGGGTTCACAGAATTCAAATTTATCAAAGCTATC | + |
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Preference number: 6 (lower is better) Translates to: VRSYLKAITHHK*GFTEFKFIKAI Trigger: GATAGCTTTGATAAATTTGAATTCTGTGAACCCGCATTTGTGGTGGGTAATTGCCTTCAGATAGCTTCTGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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| CDS TCA 72 bp | CTGAAGGCTTGCTCTACTCTTTCAGTTCGGATGTACTaGGCTTCTTTAAGGTTATCAATTAAGTCATCATTA | + |
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Preference number: 6 (lower is better) Translates to: LKACSTLSVRMY*ASLRLSIKSSL Trigger: TAATGATGACTTAATTGATAACCTTAAAGAAGCTCAGTACATCCGAACTGAAAGAGTAGAGCAAGCCTTCAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061280.17 |
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