Pregenerated sensors for PCLAF (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040204Ensembl transcript IDs: ENSMUST00000045802.7
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CGTGGTGGTGCCCACCTTGAATCCCACCTCAGCCTGACTGCCAAGTaGGTTCCAAGACAAGCCGGGCTAACAGAGGAGCTGTCAGGGGGT | + |
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Preference number: 1 (lower is better) Translates to: RGGAHLESHLSLTAK*VPRQAGLTEELSGG Trigger: ACCCCCTGACAGCTCCTCTGTTAGCCCGGCTTGTCTTGGAACTCACTTGGCAGTCAGGCTGAGGTGGGATTCAAGGTGGGCACCACCACG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045802.7 |
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| 3UTR CCA 90 bp | TTTTTCAAGACAGAGATCCTCTGTATAGTCCTAGTCCTGGCTGGCTaGAACTCCCTCTATAGCCTGAGACTCAGGGATCCACCTGGCTTT | + |
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Preference number: 1 (lower is better) Translates to: FFKTEILCIVLVLAG*NSLYSLRLRDPPGF Trigger: AAAGCCAGGTGGATCCCTGAGTCTCAGGCTATAGAGGGAGTTCCAGCCAGCCAGGACTAGGACTATACAGAGGATCTCTGTCTTGAAAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045802.7 |
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| 3UTR-3UTR GCA 90 bp | TTATGGGGGTACACACCGTTAACCCCAGCACCCAGGGAGACTGAGACAGTAGGACCACCTCAGCCTGACTaGCAAGTGAGTTCCAAGACA | + |
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Preference number: 2 (lower is better) Translates to: LWGYTPLTPAPRETETVGPPQPD*QVSSKT Trigger: TGTCTTGGAACTCACTTGGCAGTCAGGCTGAGGTGG...TCCTACTGTCTCAGTCTCCCTGGGTGCTGGGGTTAACGGTGTGTACCCCCATAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045802.7 |
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| 3UTR-3UTR TCA 90 bp | TTATGGGGGTACACACCGTTAACCCCAGCACCCAGGGAGACTGAGACAGTAGGAAGTCATCTTGAGAAATaGCGGGGAAATGCTAAGGAC | + |
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Preference number: 2 (lower is better) Translates to: LWGYTPLTPAPRETETVGSHLEK*RGNAKD Trigger: GTCCTTAGCATTTCCCCGTCATTTCTCAAGATGACT...TCCTACTGTCTCAGTCTCCCTGGGTGCTGGGGTTAACGGTGTGTACCCCCATAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000045802.7 |
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| 3UTR-3UTR TCA 90 bp | GATTCAATAGCATCCTTGAGCCTCCACACATACCCAAACACACAATTTCGTGTGTTGCCTCCTCAGTGCTaGGACCAAAGGTGTGCAGCC | + |
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Preference number: 2 (lower is better) Translates to: DSIASLSLHTYPNTQFRVLPPQC*DQRCAA Trigger: GGCTGCACACCTTTGGTCTCAGCACTGAGGAGGCAA...CACACGAAATTGTGTGTTTGGGTATGTGTGGAGGCTCAAGGATGCTATTGAATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045802.7 |
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| 3UTR-3UTR TCA 90 bp | ACAGGAGATTCAATAGCATCCTTGAGCCTCCACACATACCCAAACACACAATTTTGGTGGTGCCCACCTTaGATCCCACCTCAGCCTGAC | + |
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Preference number: 2 (lower is better) Translates to: TGDSIASLSLHTYPNTQFWWCPP*IPPQPD Trigger: GTCAGGCTGAGGTGGGATTCAAGGTGGGCACCACCA...AAATTGTGTGTTTGGGTATGTGTGGAGGCTCAAGGATGCTATTGAATCTCCTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045802.7 |
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| 3UTR-3UTR TCA 90 bp | TTATGGGGGTACACACCGTTAACCCCAGCACCCAGGGAGACTGAGACAGTAGGACTGACATATAAAACCTaGTTTGCAGCACGATTTGTC | + |
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Preference number: 2 (lower is better) Translates to: LWGYTPLTPAPRETETVGLTYKT*FAARFV Trigger: GACAAATCGTGCTGCAAATCAGGTTTTATATGTCAG...TCCTACTGTCTCAGTCTCCCTGGGTGCTGGGGTTAACGGTGTGTACCCCCATAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000045802.7 |
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| 3UTR CAA 90 bp | CCCATGGTTCCTTGTGTTGTGAATACAGGAGATTCAATAGCATCCTaGAGCCTCCACACATACCCAAACACACAATTTCGTGTGCATACA | + |
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Preference number: 2 (lower is better) Translates to: PMVPCVVNTGDSIAS*SLHTYPNTQFRVHT Trigger: TGTATGCACACGAAATTGTGTGTTTGGGTATGTGTGGAGGCTCAAGGATGCTATTGAATCTCCTGTATTCACAACACAAGGAACCATGGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045802.7 |
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| 3UTR-3UTR CCA 90 bp | ATCTATGGAGTCTTTGTCCCTGCTTCTGTTAGTATTTTATCTCTTTGTATGGTTACTCAGGGATCCACCTaGCTTTGCCTCCTCAGTGCT | + |
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Preference number: 2 (lower is better) Translates to: IYGVFVPASVSILSLCMVTQGST*LCLLSA Trigger: AGCACTGAGGAGGCAAAGCCAGGTGGATCCCTGAGT...AACCATACAAAGAGATAAAATACTAACAGAAGCAGGGACAAAGACTCCATAGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045802.7 |
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| 3UTR-3UTR CCA 90 bp | GATTCAATAGCATCCTTGAGCCTCCACACATACCCAAACACACAATTTCGTGTGTCACTGCCCATAAAATaGCATCAGTACAAAAATCTA | + |
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Preference number: 2 (lower is better) Translates to: DSIASLSLHTYPNTQFRVSLPIK*HQYKNL Trigger: TAGATTTTTGTACTGATGCCATTTTATGGGCAGTGA...CACACGAAATTGTGTGTTTGGGTATGTGTGGAGGCTCAAGGATGCTATTGAATC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045802.7 |
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| 3UTR TCA 72 bp | GCCCACCTTGAATCCCACCTCAGCCTGACTGCCAAGTaGGTTCCAAGACAAGCCGGGCTAACAGAGGAGCTG | + |
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Preference number: 3 (lower is better) Translates to: AHLESHLSLTAK*VPRQAGLTEEL Trigger: CAGCTCCTCTGTTAGCCCGGCTTGTCTTGGAACTCACTTGGCAGTCAGGCTGAGGTGGGATTCAAGGTGGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045802.7 |
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| 3UTR-3UTR CAA 90 bp | ACAGGAGATTCAATAGCATCCTTGAGCCTCCACACATACCCAAACACACAATTTTTCAGCATTTTATCTTaGCCTCCCCAACCCATTCTG | + |
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Preference number: 3 (lower is better) Translates to: TGDSIASLSLHTYPNTQFFSILS*PPQPIL Trigger: CAGAATGGGTTGGGGAGGCAAAGATAAAATGCTGAA...AAATTGTGTGTTTGGGTATGTGTGGAGGCTCAAGGATGCTATTGAATCTCCTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000045802.7 |
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| 3UTR-3UTR CAA 90 bp | TCCATAATCACTGCCCATAAAATGGCATCAGTACAAAAATCTAAGCAAAGACCGCCCTCAACAAGCCAATaGGACAAACTCATTTACCCA | + |
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Preference number: 3 (lower is better) Translates to: SIITAHKMASVQKSKQRPPSTSQ*DKLIYP Trigger: TGGGTAAATGAGTTTGTCCAATTGGCTTGTTGAGGG...CGGTCTTTGCTTAGATTTTTGTACTGATGCCATTTTATGGGCAGTGATTATGGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045802.7 |
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| CDS-3UTR CCA 90 bp | TTATGGGGGTACACACCGTTAACCCCAGCACCCAGGGAGACTGAGACAGTAGGATGCCTTTTTGCCACTTaGGAGTTGGGCGCACACAGA | + |
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Preference number: 4 (lower is better) Translates to: LWGYTPLTPAPRETETVGCLFAT*ELGAHR Trigger: TCTGTGTGCGCCCAACTCCCAAGTGGCAAAAAGGCA...TCCTACTGTCTCAGTCTCCCTGGGTGCTGGGGTTAACGGTGTGTACCCCCATAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000045802.7 |
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| CDS-3UTR GCA 90 bp | GATTCAATAGCATCCTTGAGCCTCCACACATACCCAAACACACAATTTCGTGTGTCCCCGATGCCTTTTTaGCACTTGGGAGTTGGGCGC | + |
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Preference number: 4 (lower is better) Translates to: DSIASLSLHTYPNTQFRVSPMPF*HLGVGR Trigger: GCGCCCAACTCCCAAGTGGCAAAAAGGCATCGGGGA...CACACGAAATTGTGTGTTTGGGTATGTGTGGAGGCTCAAGGATGCTATTGAATC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045802.7 |
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| CDS-3UTR TCA 90 bp | ACAGGAGATTCAATAGCATCCTTGAGCCTCCACACATACCCAAACACACAATTTAACTTGAAGAATTGGTaGCAAAGGTGGAGGAGCCAA | + |
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Preference number: 4 (lower is better) Translates to: TGDSIASLSLHTYPNTQFNLKNW*QRWRSQ Trigger: TTGGCTCCTCCACCTTTGTCACCAATTCTTCAAGTT...AAATTGTGTGTTTGGGTATGTGTGGAGGCTCAAGGATGCTATTGAATCTCCTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045802.7 |
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| CDS-3UTR GCA 90 bp | GATTCAATAGCATCCTTGAGCCTCCACACATACCCAAACACACAATTTCGTGTGGACTGGGTTCCCTCCTaGATACTTATTTTCAGCTTT | + |
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Preference number: 4 (lower is better) Translates to: DSIASLSLHTYPNTQFRVDWVPS*ILIFSF Trigger: AAAGCTGAAAATAAGTATGCAGGAGGGAACCCAGTC...CACACGAAATTGTGTGTTTGGGTATGTGTGGAGGCTCAAGGATGCTATTGAATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045802.7 |
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| CDS-3UTR CCA 90 bp | ATCTATGGAGTCTTTGTCCCTGCTTCTGTTAGTATTTTATCTCTTTGTATGGTTTTGCCACTTGGGAGTTaGGCGCACACAGACTGGGTT | + |
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Preference number: 4 (lower is better) Translates to: IYGVFVPASVSILSLCMVLPLGS*AHTDWV Trigger: AACCCAGTCTGTGTGCGCCCAACTCCCAAGTGGCAA...AACCATACAAAGAGATAAAATACTAACAGAAGCAGGGACAAAGACTCCATAGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045802.7 |
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| 3UTR CAA 72 bp | CCTTGTGTTGTGAATACAGGAGATTCAATAGCATCCTaGAGCCTCCACACATACCCAAACACACAATTTCGT | + |
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Preference number: 4 (lower is better) Translates to: PCVVNTGDSIAS*SLHTYPNTQFR Trigger: ACGAAATTGTGTGTTTGGGTATGTGTGGAGGCTCAAGGATGCTATTGAATCTCCTGTATTCACAACACAAGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045802.7 |
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| CDS-3UTR TCA 90 bp | GATTCAATAGCATCCTTGAGCCTCCACACATACCCAAACACACAATTTCGTGTGTTTTCATCATCTCTGTaGTCAGGTTGCAAAGGACAA | + |
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Preference number: 4 (lower is better) Translates to: DSIASLSLHTYPNTQFRVFSSSL*SGCKGQ Trigger: TTGTCCTTTGCAACCTGATCACAGAGATGATGAAAA...CACACGAAATTGTGTGTTTGGGTATGTGTGGAGGCTCAAGGATGCTATTGAATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045802.7 |
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| CDS-3UTR CAA 90 bp | GATTCAATAGCATCCTTGAGCCTCCACACATACCCAAACACACAATTTCGTGTGTTCCCCGATGCCTTTTaGCCACTTGGGAGTTGGGCG | + |
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Preference number: 5 (lower is better) Translates to: DSIASLSLHTYPNTQFRVFPDAF*PLGSWA Trigger: CGCCCAACTCCCAAGTGGCAAAAAGGCATCGGGGAA...CACACGAAATTGTGTGTTTGGGTATGTGTGGAGGCTCAAGGATGCTATTGAATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045802.7 |
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| CDS-3UTR CAA 90 bp | GATTCAATAGCATCCTTGAGCCTCCACACATACCCAAACACACAATTTCGTGTGCACCTTCCTAGGGGCTaGAGAAGCCACCGCTTTTCT | + |
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Preference number: 5 (lower is better) Translates to: DSIASLSLHTYPNTQFRVHLPRG*RSHRFS Trigger: AGAAAAGCGGTGGCTTCTCAAGCCCCTAGGAAGGTG...CACACGAAATTGTGTGTTTGGGTATGTGTGGAGGCTCAAGGATGCTATTGAATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045802.7 |
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| CDS-3UTR CAA 90 bp | GATTCAATAGCATCCTTGAGCCTCCACACATACCCAAACACACAATTTCGTGTGATGCCTTTTTGCCACTaGGGAGTTGGGCGCACACAG | + |
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Preference number: 5 (lower is better) Translates to: DSIASLSLHTYPNTQFRVMPFCH*GVGRTQ Trigger: CTGTGTGCGCCCAACTCCCAAGTGGCAAAAAGGCAT...CACACGAAATTGTGTGTTTGGGTATGTGTGGAGGCTCAAGGATGCTATTGAATC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045802.7 |
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| CDS-3UTR CAA 90 bp | TCCATAATCACTGCCCATAAAATGGCATCAGTACAAAAATCTAAGCAAAGACCGTTTGCCACTTGGGAGTaGGGCGCACACAGACTGGGT | + |
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Preference number: 5 (lower is better) Translates to: SIITAHKMASVQKSKQRPFATWE*GAHRLG Trigger: ACCCAGTCTGTGTGCGCCCAACTCCCAAGTGGCAAA...CGGTCTTTGCTTAGATTTTTGTACTGATGCCATTTTATGGGCAGTGATTATGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045802.7 |
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| CDS-3UTR CAA 90 bp | ACAGGAGATTCAATAGCATCCTTGAGCCTCCACACATACCCAAACACACAATTTATCTCTGTGATCAGGTaGCAAAGGACAAGCTTTTCT | + |
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Preference number: 5 (lower is better) Translates to: TGDSIASLSLHTYPNTQFISVIR*QRTSFS Trigger: AGAAAAGCTTGTCCTTTGCAACCTGATCACAGAGAT...AAATTGTGTGTTTGGGTATGTGTGGAGGCTCAAGGATGCTATTGAATCTCCTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045802.7 |
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| CDS-3UTR CAA 90 bp | ATCTATGGAGTCTTTGTCCCTGCTTCTGTTAGTATTTTATCTCTTTGTATGGTTGACGAACTTGAAGAATaGGTGACAAAGGTGGAGGAG | + |
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Preference number: 5 (lower is better) Translates to: IYGVFVPASVSILSLCMVDELEE*VTKVEE Trigger: CTCCTCCACCTTTGTCACCAATTCTTCAAGTTCGTC...AACCATACAAAGAGATAAAATACTAACAGAAGCAGGGACAAAGACTCCATAGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045802.7 |
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| CDS CAA 72 bp | GACAAAGGTGGAGGAGCCAAGCACCTTCCTAGGGGCTaGAGAAGCCACCGCTTTTCTGTAGGCTCCTGGAAC | + |
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Preference number: 6 (lower is better) Translates to: DKGGGAKHLPRG*RSHRFSVGSWN Trigger: GTTCCAGGAGCCTACAGAAAAGCGGTGGCTTCTCAAGCCCCTAGGAAGGTGCTTGGCTCCTCCACCTTTGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045802.7 |
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| CDS CAA 90 bp | AGAATTGGTGACAAAGGTGGAGGAGCCAAGCACCTTCCTAGGGGCTaGAGAAGCCACCGCTTTTCTGTAGGCTCCTGGAACGTAGTTTGC | + |
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Preference number: 6 (lower is better) Translates to: RIGDKGGGAKHLPRG*RSHRFSVGSWNVVC Trigger: GCAAACTACGTTCCAGGAGCCTACAGAAAAGCGGTGGCTTCTCAAGCCCCTAGGAAGGTGCTTGGCTCCTCCACCTTTGTCACCAATTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045802.7 |
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| CDS TCA 72 bp | TCCTGCATACTTATTTTCAGCTTTTCTCGACGAACTTaGAGAATTGGTGACAAAGGTGGAGGAGCCAAGCAC | + |
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Preference number: 6 (lower is better) Translates to: SCILIFSFSRRT*RIGDKGGGAKH Trigger: GTGCTTGGCTCCTCCACCTTTGTCACCAATTCTTCAAGTTCGTCGAGAAAAGCTGAAAATAAGTATGCAGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045802.7 |
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