RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PCGF2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000018537

Ensembl transcript IDs: ENSMUST00000018681.14, ENSMUST00000103148.8, ENSMUST00000103149.9, ENSMUST00000169807.8, ENSMUST00000179765.8

Found 221 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp GGGCTGTTGGCTTTTGGCAGAACTGGAGTCTGTGCTTGTCTGGGGCCACCCTCTGGGGCTTCCACTGTCTaGGGAGGTGAGGGAAATGCC +
Preference number: 2 (lower is better)
Translates to: GLLAFGRTGVCACLGPPSGASTV*GGEGNA
Trigger: GGCATTTCCCTCACCTCCTCAGACAGTGGAAGCCCC...AGAGGGTGGCCCCAGACAAGCACAGACTCCAGTTCTGCCAAAAGCCAACAGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
3UTR-3UTR CCA 90 bp CTAGGACAGGAGGGTACAGTCACAGGACCTCAGACTCAGGACGTGGTGCAAACACTGCCTGGCCTCAGCTaGGGGGTGAGGCAGTGGACT +
Preference number: 2 (lower is better)
Translates to: LGQEGTVTGPQTQDVVQTLPGLS*GVRQWT
Trigger: AGTCCACTGCCTCACCCCCCAGCTGAGGCCAGGCAG...TGTTTGCACCACGTCCTGAGTCTGAGGTCCTGTGACTGTACCCTCCTGTCCTAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
3UTR-3UTR GCA 90 bp TTTGGCAGAACTGGAGTCTGTGCTTGTCTGGGGCCACCCTCTACTCTAGGCCCCCCACTTGGTCCTCACTaGCAGAGGACACAGACTGCA +
Preference number: 2 (lower is better)
Translates to: FGRTGVCACLGPPSTLGPPLGPH*QRTQTA
Trigger: TGCAGTCTGTGTCCTCTGGCAGTGAGGACCAAGTGG...GGGGCCTAGAGTAGAGGGTGGCCCCAGACAAGCACAGACTCCAGTTCTGCCAAA
58% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
3UTR-3UTR CCA 90 bp GTACAGTCACAGGACCTCAGACTCAGGACGTGGTGCAAACAGACCCATGGGCTCGGTGAGGCAGTGGACTaGAGGGCTGTTGGCTTTTGG +
Preference number: 2 (lower is better)
Translates to: VQSQDLRLRTWCKQTHGLGEAVD*RAVGFW
Trigger: CCAAAAGCCAACAGCCCTCCAGTCCACTGCCTCACC...GAGCCCATGGGTCTGTTTGCACCACGTCCTGAGTCTGAGGTCCTGTGACTGTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
3UTR-3UTR TCA 90 bp TTTGGCAGAACTGGAGTCTGTGCTTGTCTGGGGCCACCCTCTACTCTAGGCCCCCACTGTCTGAGGAGGTaGGGGAAATGCCTTCTTCAC +
Preference number: 2 (lower is better)
Translates to: FGRTGVCACLGPPSTLGPHCLRR*GKCLLH
Trigger: GTGAAGAAGGCATTTCCCTCACCTCCTCAGACAGTG...GGGGCCTAGAGTAGAGGGTGGCCCCAGACAAGCACAGACTCCAGTTCTGCCAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
3UTR-3UTR CCA 90 bp GTACAGTCACAGGACCTCAGACTCAGGACGTGGTGCAAACAGACCCATGGGCTCGGGTTTGGACAGGTATaGGGAACAGCCAAGATGGAC +
Preference number: 2 (lower is better)
Translates to: VQSQDLRLRTWCKQTHGLGFGQV*GTAKMD
Trigger: GTCCATCTTGGCTGTTCCCCATACCTGTCCAAACCC...GAGCCCATGGGTCTGTTTGCACCACGTCCTGAGTCTGAGGTCCTGTGACTGTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
3UTR-3UTR TCA 90 bp CTAGGACAGGAGGGTACAGTCACAGGACCTCAGACTCAGGACGTGGTGCAAACACACAGACTGCATTTGTaGAAGGCACTGACTGTCTCA +
Preference number: 2 (lower is better)
Translates to: LGQEGTVTGPQTQDVVQTHRLHL*KALTVS
Trigger: TGAGACAGTCAGTGCCTTTCACAAATGCAGTCTGTG...TGTTTGCACCACGTCCTGAGTCTGAGGTCCTGTGACTGTACCCTCCTGTCCTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
3UTR-3UTR TCA 90 bp CTAGGACAGGAGGGTACAGTCACAGGACCTCAGACTCAGGACGTGGTGCAAACAAAATCTATGTACACTTaGGGAAGAGCAGGCGAGAGC +
Preference number: 2 (lower is better)
Translates to: LGQEGTVTGPQTQDVVQTKSMYT*GRAGES
Trigger: GCTCTCGCCTGCTCTTCCTCAAGTGTACATAGATTT...TGTTTGCACCACGTCCTGAGTCTGAGGTCCTGTGACTGTACCCTCCTGTCCTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
3UTR-3UTR GCA 90 bp GATATAAATGACCTAGGACAGGAGGGTACAGTCACAGGACCTCAGACTCAGGACCCACTTGGTCCTCACTaGCAGAGGACACAGACTGCA +
Preference number: 2 (lower is better)
Translates to: DINDLGQEGTVTGPQTQDPLGPH*QRTQTA
Trigger: TGCAGTCTGTGTCCTCTGGCAGTGAGGACCAAGTGG...GTCCTGAGTCTGAGGTCCTGTGACTGTACCCTCCTGTCCTAGGTCATTTATATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
3UTR-3UTR CCA 90 bp AAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAAAAGGAGGGAAAAGATaGCTGCGGAAGGAGAGGGTC +
Preference number: 2 (lower is better)
Translates to: KPTSHSENGRNQGKSKVEKGGKR*LRKERV
Trigger: GACCCTCTCCTTCCGCAGCCATCTTTTCCCTCCTTT...TTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
3UTR-3UTR CCA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAAAAAGGAGGGAAAAGATaGCTGCGGAAGGAGAGGGTC +
Preference number: 2 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKKGGKR*LRKERV
Trigger: GACCCTCTCCTTCCGCAGCCATCTTTTCCCTCCTTT...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
50% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
3UTR-3UTR TCA 90 bp TTCTTTTATTTTCTTGTGCTTCTAGATGCCTCTGTCCTATCCCTGCCTGGCCTCCACTGTCTGAGGAGGTaGGGGAAATGCCTTCTTCAC +
Preference number: 2 (lower is better)
Translates to: FFYFLVLLDASVLSLPGLHCLRR*GKCLLH
Trigger: GTGAAGAAGGCATTTCCCTCACCTCCTCAGACAGTG...GAGGCCAGGCAGGGATAGGACAGAGGCATCTAGAAGCACAAGAAAATAAAAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
3UTR-3UTR CCA 90 bp TTCTTTTATTTTCTTGTGCTTCTAGATGCCTCTGTCCTATCCCTGCCTGGCCTCAAAGGAGGGAAAAGATaGCTGCGGAAGGAGAGGGTC +
Preference number: 2 (lower is better)
Translates to: FFYFLVLLDASVLSLPGLKGGKR*LRKERV
Trigger: GACCCTCTCCTTCCGCAGCCATCTTTTCCCTCCTTT...GAGGCCAGGCAGGGATAGGACAGAGGCATCTAGAAGCACAAGAAAATAAAAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
3UTR-3UTR TCA 90 bp CCAAGAGATATAAATGACCTAGGACAGGAGGGTACAGTCACAGGACCTCAGACTCACAGACTGCATTTGTaGAAGGCACTGACTGTCTCA +
Preference number: 2 (lower is better)
Translates to: PRDINDLGQEGTVTGPQTHRLHL*KALTVS
Trigger: TGAGACAGTCAGTGCCTTTCACAAATGCAGTCTGTG...AGTCTGAGGTCCTGTGACTGTACCCTCCTGTCCTAGGTCATTTATATCTCTTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
3UTR-3UTR CCA 90 bp TTTATAAAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAAAAGGAGGGAAAAGATaGCTGCGGAAGGAGAGGGTC +
Preference number: 2 (lower is better)
Translates to: FIKPTSHSENGRNQGKSKKGGKR*LRKERV
Trigger: GACCCTCTCCTTCCGCAGCCATCTTTTCCCTCCTTT...TTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTTTATAAA
47% GC, longest homopolymer 7 nt, total homopolymer stretches 19 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
3UTR CCA 72 bp CTAGATGCCTCTGTCCTATCCCTGCCTGGCCTCAGCTaGGGGGTGAGGCAGTGGACTGGAGGGCTGTTGGCT +
Preference number: 3 (lower is better)
Translates to: LDASVLSLPGLS*GVRQWTGGLLA
Trigger: AGCCAACAGCCCTCCAGTCCACTGCCTCACCCCCCAGCTGAGGCCAGGCAGGGATAGGACAGAGGCATCTAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
3UTR-3UTR CAA 90 bp TTTGGCAGAACTGGAGTCTGTGCTTGTCTGGGGCCACCCTCTACTCTAGGCCCCCTTCTTCACAGCCACTaGGTCCTCACTGCCAGAGGA +
Preference number: 3 (lower is better)
Translates to: FGRTGVCACLGPPSTLGPLLHSH*VLTARG
Trigger: TCCTCTGGCAGTGAGGACCAAGTGGCTGTGAAGAAG...GGGGCCTAGAGTAGAGGGTGGCCCCAGACAAGCACAGACTCCAGTTCTGCCAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
3UTR CCA 72 bp AGGAGGGTACAGTCACAGGACCTCAGACTCAGGACGTaGTGCAAACAGACCCATGGGCTCAGAACCTCACAC +
Preference number: 3 (lower is better)
Translates to: RRVQSQDLRLRT*CKQTHGLRTSH
Trigger: GTGTGAGGTTCTGAGCCCATGGGTCTGTTTGCACCACGTCCTGAGTCTGAGGTCCTGTGACTGTACCCTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
3UTR GCA 72 bp AGGGTACAGTCACAGGACCTCAGACTCAGGACGTGGTaGAAACAGACCCATGGGCTCAGAACCTCACACACT +
Preference number: 3 (lower is better)
Translates to: RVQSQDLRLRTW*KQTHGLRTSHT
Trigger: AGTGTGTGAGGTTCTGAGCCCATGGGTCTGTTTGCACCACGTCCTGAGTCTGAGGTCCTGTGACTGTACCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
3UTR-3UTR CAA 90 bp GTACAGTCACAGGACCTCAGACTCAGGACGTGGTGCAAACAGACCCATGGGCTCGTCCACCAGGTAGAGTaGGGGTCAGCTCATTCTTTT +
Preference number: 3 (lower is better)
Translates to: VQSQDLRLRTWCKQTHGLVHQVE*GSAHSF
Trigger: AAAAGAATGAGCTGACCCCAACTCTACCTGGTGGAC...GAGCCCATGGGTCTGTTTGCACCACGTCCTGAGTCTGAGGTCCTGTGACTGTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
3UTR TCA 72 bp ATATATAGATTTATTTATAAAACCCACCTCCCACTCTaGAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGA +
Preference number: 3 (lower is better)
Translates to: IYRFIYKTHLPL*KWEEPGKVKSG
Trigger: TCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTTTATAAATAAATCTATATAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp GGGCTGTTGGCTTTTGGCAGAACTGGAGTCTGTGCTTGTCTGGGGCCACCCTCTGGGGGCCGTGGGAGCTaGGAGAGCCATGGGATGGGG +
Preference number: 4 (lower is better)
Translates to: GLLAFGRTGVCACLGPPSGGRGS*ESHGMG
Trigger: CCCCATCCCATGGCTCTCCCAGCTCCCACGGCCCCC...AGAGGGTGGCCCCAGACAAGCACAGACTCCAGTTCTGCCAAAAGCCAACAGCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp TTTGGCAGAACTGGAGTCTGTGCTTGTCTGGGGCCACCCTCTACTCTAGGCCCCAGGTGGCCGGAAGGGTaGCAGGGCTGGGAGCCTTGT +
Preference number: 4 (lower is better)
Translates to: FGRTGVCACLGPPSTLGPRWPEG*QGWEPC
Trigger: ACAAGGCTCCCAGCCCTGCCACCCTTCCGGCCACCT...GGGGCCTAGAGTAGAGGGTGGCCCCAGACAAGCACAGACTCCAGTTCTGCCAAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp GGGCTGTTGGCTTTTGGCAGAACTGGAGTCTGTGCTTGTCTGGGGCCACCCTCTATGGGGTCGCAGGGCTaGGCAAGGAGGAGGAGGTGG +
Preference number: 4 (lower is better)
Translates to: GLLAFGRTGVCACLGPPSMGSQG*ARRRRW
Trigger: CCACCTCCTCCTCCTTGCCCAGCCCTGCGACCCCAT...AGAGGGTGGCCCCAGACAAGCACAGACTCCAGTTCTGCCAAAAGCCAACAGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR TCA 90 bp TTGGCTTTTGGCAGAACTGGAGTCTGTGCTTGTCTGGGGCCACCCTCTACTCTAGCACCGTGGGCAGGGTaGGCCGCTTGCAGGCTGGCT +
Preference number: 4 (lower is better)
Translates to: LAFGRTGVCACLGPPSTLAPWAG*AACRLA
Trigger: AGCCAGCCTGCAAGCGGCTCACCCTGCCCACGGTGC...TAGAGTAGAGGGTGGCCCCAGACAAGCACAGACTCCAGTTCTGCCAAAAGCCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR GCA 90 bp AGGGCTGTTGGCTTTTGGCAGAACTGGAGTCTGTGCTTGTCTGGGGCCACCCTCCCCCGCTGGTGTTGGTaGCTTCTGAGGGGGTTGGCA +
Preference number: 4 (lower is better)
Translates to: RAVGFWQNWSLCLSGATLPRWCW*LLRGLA
Trigger: TGCCAACCCCCTCAGAAGGCACCAACACCAGCGGGG...GAGGGTGGCCCCAGACAAGCACAGACTCCAGTTCTGCCAAAAGCCAACAGCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp CTAGGACAGGAGGGTACAGTCACAGGACCTCAGACTCAGGACGTGGTGCAAACAGCAAGGAGGAGGAGGTaGCCGGAAGGGTGGCAGGGC +
Preference number: 4 (lower is better)
Translates to: LGQEGTVTGPQTQDVVQTARRRR*PEGWQG
Trigger: GCCCTGCCACCCTTCCGGCCACCTCCTCCTCCTTGC...TGTTTGCACCACGTCCTGAGTCTGAGGTCCTGTGACTGTACCCTCCTGTCCTAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR GCA 90 bp GGGCTGTTGGCTTTTGGCAGAACTGGAGTCTGTGCTTGTCTGGGGCCACCCTCTCATGACGGTCATGGCTaGTGGGCACCGCAGGAATCG +
Preference number: 4 (lower is better)
Translates to: GLLAFGRTGVCACLGPPSHDGHG*WAPQES
Trigger: CGATTCCTGCGGTGCCCAGCAGCCATGACCGTCATG...AGAGGGTGGCCCCAGACAAGCACAGACTCCAGTTCTGCCAAAAGCCAACAGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR GCA 90 bp GAGGCAGTGGACTGGAGGGCTGTTGGCTTTTGGCAGAACTGGAGTCTGTGCTTGCCCCGCTGGTGTTGGTaGCTTCTGAGGGGGTTGGCA +
Preference number: 4 (lower is better)
Translates to: EAVDWRAVGFWQNWSLCLPRWCW*LLRGLA
Trigger: TGCCAACCCCCTCAGAAGGCACCAACACCAGCGGGG...CAAGCACAGACTCCAGTTCTGCCAAAAGCCAACAGCCCTCCAGTCCACTGCCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp TTTGGCAGAACTGGAGTCTGTGCTTGTCTGGGGCCACCCTCTACTCTAGGCCCCGAGCCGCTTGCAGGCTaGCTGGACACGGTACTTGAG +
Preference number: 4 (lower is better)
Translates to: FGRTGVCACLGPPSTLGPEPLAG*LDTVLE
Trigger: CTCAAGTACCGTGTCCAGCCAGCCTGCAAGCGGCTC...GGGGCCTAGAGTAGAGGGTGGCCCCAGACAAGCACAGACTCCAGTTCTGCCAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR TCA 90 bp GATATAAATGACCTAGGACAGGAGGGTACAGTCACAGGACCTCAGACTCAGGACGCACCGTGGGCAGGGTaGGCCGCTTGCAGGCTGGCT +
Preference number: 4 (lower is better)
Translates to: DINDLGQEGTVTGPQTQDAPWAG*AACRLA
Trigger: AGCCAGCCTGCAAGCGGCTCACCCTGCCCACGGTGC...GTCCTGAGTCTGAGGTCCTGTGACTGTACCCTCCTGTCCTAGGTCATTTATATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR TCA 90 bp CTAGGACAGGAGGGTACAGTCACAGGACCTCAGACTCAGGACGTGGTGCAAACAGGTCCCAGCGGCAGTTaGAGGTGGAGTGGGGGAAGT +
Preference number: 4 (lower is better)
Translates to: LGQEGTVTGPQTQDVVQTGPSGS*RWSGGS
Trigger: ACTTCCCCCACTCCACCTTCAACTGCCGCTGGGACC...TGTTTGCACCACGTCCTGAGTCTGAGGTCCTGTGACTGTACCCTCCTGTCCTAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR GCA 90 bp TTTGGCAGAACTGGAGTCTGTGCTTGTCTGGGGCCACCCTCTACTCTAGGCCCCTCATCTTGCGCCCCCTaGTGGTGGAGGATGGCGTTT +
Preference number: 4 (lower is better)
Translates to: FGRTGVCACLGPPSTLGPSSCAP*WWRMAF
Trigger: AAACGCCATCCTCCACCAGCAGGGGGCGCAAGATGA...GGGGCCTAGAGTAGAGGGTGGCCCCAGACAAGCACAGACTCCAGTTCTGCCAAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR GCA 90 bp AGGGCTGTTGGCTTTTGGCAGAACTGGAGTCTGTGCTTGTCTGGGGCCACCCTCTCATCTTGCGCCCCCTaGTGGTGGAGGATGGCGTTT +
Preference number: 4 (lower is better)
Translates to: RAVGFWQNWSLCLSGATLSSCAP*WWRMAF
Trigger: AAACGCCATCCTCCACCAGCAGGGGGCGCAAGATGA...GAGGGTGGCCCCAGACAAGCACAGACTCCAGTTCTGCCAAAAGCCAACAGCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp CTAGGACAGGAGGGTACAGTCACAGGACCTCAGACTCAGGACGTGGTGCAAACACGCTTGCAGGCTGGCTaGACACGGTACTTGAGGGGG +
Preference number: 4 (lower is better)
Translates to: LGQEGTVTGPQTQDVVQTRLQAG*TRYLRG
Trigger: CCCCCTCAAGTACCGTGTCCAGCCAGCCTGCAAGCG...TGTTTGCACCACGTCCTGAGTCTGAGGTCCTGTGACTGTACCCTCCTGTCCTAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp GGGCTGTTGGCTTTTGGCAGAACTGGAGTCTGTGCTTGTCTGGGGCCACCCTCTCCTGCTGGTGGAGGATaGCGTTTGCAGGCAGTTCGA +
Preference number: 4 (lower is better)
Translates to: GLLAFGRTGVCACLGPPSPAGGG*RLQAVR
Trigger: TCGAACTGCCTGCAAACGCCATCCTCCACCAGCAGG...AGAGGGTGGCCCCAGACAAGCACAGACTCCAGTTCTGCCAAAAGCCAACAGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp TTGGCTTTTGGCAGAACTGGAGTCTGTGCTTGTCTGGGGCCACCCTCTACTCTATGCGCCCCCTGCTGGTaGAGGATGGCGTTTGCAGGC +
Preference number: 4 (lower is better)
Translates to: LAFGRTGVCACLGPPSTLCAPCW*RMAFAG
Trigger: GCCTGCAAACGCCATCCTCCACCAGCAGGGGGCGCA...TAGAGTAGAGGGTGGCCCCAGACAAGCACAGACTCCAGTTCTGCCAAAAGCCAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp GAGGCAGTGGACTGGAGGGCTGTTGGCTTTTGGCAGAACTGGAGTCTGTGCTTGTCTTGCGCCCCCTGCTaGTGGAGGATGGCGTTTGCA +
Preference number: 4 (lower is better)
Translates to: EAVDWRAVGFWQNWSLCLSCAPC*WRMAFA
Trigger: TGCAAACGCCATCCTCCACCAGCAGGGGGCGCAAGA...CAAGCACAGACTCCAGTTCTGCCAAAAGCCAACAGCCCTCCAGTCCACTGCCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR TCA 90 bp AAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAGCACCGTGGGCAGGGTaGGCCGCTTGCAGGCTGGCT +
Preference number: 4 (lower is better)
Translates to: KPTSHSENGRNQGKSKVEAPWAG*AACRLA
Trigger: AGCCAGCCTGCAAGCGGCTCACCCTGCCCACGGTGC...TTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR TCA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAAGCACCGTGGGCAGGGTaGGCCGCTTGCAGGCTGGCT +
Preference number: 4 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKAPWAG*AACRLA
Trigger: AGCCAGCCTGCAAGCGGCTCACCCTGCCCACGGTGC...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR GCA 90 bp TTTGGCAGAACTGGAGTCTGTGCTTGTCTGGGGCCACCCTCTACTCTAGGCCCCCTCTGTCAGGGGGTATaGTGCATAGAAGTCCCGTCG +
Preference number: 4 (lower is better)
Translates to: FGRTGVCACLGPPSTLGPLCQGV*CIEVPS
Trigger: CGACGGGACTTCTATGCAGCATACCCCCTGACAGAG...GGGGCCTAGAGTAGAGGGTGGCCCCAGACAAGCACAGACTCCAGTTCTGCCAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp CTAGGACAGGAGGGTACAGTCACAGGACCTCAGACTCAGGACGTGGTGCAAACAATGCCCCGCTGGTGTTaGTGCCTTCTGAGGGGGTTG +
Preference number: 4 (lower is better)
Translates to: LGQEGTVTGPQTQDVVQTMPRWC*CLLRGL
Trigger: CAACCCCCTCAGAAGGCACCAACACCAGCGGGGCAT...TGTTTGCACCACGTCCTGAGTCTGAGGTCCTGTGACTGTACCCTCCTGTCCTAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp GAGGCAGTGGACTGGAGGGCTGTTGGCTTTTGGCAGAACTGGAGTCTGTGCTTGACTCTGATGCCCCGCTaGTGTTGGTGCCTTCTGAGG +
Preference number: 4 (lower is better)
Translates to: EAVDWRAVGFWQNWSLCLTLMPR*CWCLLR
Trigger: CCTCAGAAGGCACCAACACCAGCGGGGCATCAGAGT...CAAGCACAGACTCCAGTTCTGCCAAAAGCCAACAGCCCTCCAGTCCACTGCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp GATATAAATGACCTAGGACAGGAGGGTACAGTCACAGGACCTCAGACTCAGGACGCAAGGAGGAGGAGGTaGCCGGAAGGGTGGCAGGGC +
Preference number: 4 (lower is better)
Translates to: DINDLGQEGTVTGPQTQDARRRR*PEGWQG
Trigger: GCCCTGCCACCCTTCCGGCCACCTCCTCCTCCTTGC...GTCCTGAGTCTGAGGTCCTGTGACTGTACCCTCCTGTCCTAGGTCATTTATATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAAGGGGGCCGTGGGAGCTaGGAGAGCCATGGGATGGGG +
Preference number: 4 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKGGRGS*ESHGMG
Trigger: CCCCATCCCATGGCTCTCCCAGCTCCCACGGCCCCC...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp GATATAAATGACCTAGGACAGGAGGGTACAGTCACAGGACCTCAGACTCAGGACCGCCTCGGTCCTCGTTaGAGCCGTTGGGGACCTCTG +
Preference number: 4 (lower is better)
Translates to: DINDLGQEGTVTGPQTQDRLGPR*SRWGPL
Trigger: CAGAGGTCCCCAACGGCTCCAACGAGGACCGAGGCG...GTCCTGAGTCTGAGGTCCTGTGACTGTACCCTCCTGTCCTAGGTCATTTATATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp AAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAGCAAGGAGGAGGAGGTaGCCGGAAGGGTGGCAGGGC +
Preference number: 4 (lower is better)
Translates to: KPTSHSENGRNQGKSKVEARRRR*PEGWQG
Trigger: GCCCTGCCACCCTTCCGGCCACCTCCTCCTCCTTGC...TTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp GATATAAATGACCTAGGACAGGAGGGTACAGTCACAGGACCTCAGACTCAGGACATGGGGTCGCAGGGCTaGGCAAGGAGGAGGAGGTGG +
Preference number: 4 (lower is better)
Translates to: DINDLGQEGTVTGPQTQDMGSQG*ARRRRW
Trigger: CCACCTCCTCCTCCTTGCCCAGCCCTGCGACCCCAT...GTCCTGAGTCTGAGGTCCTGTGACTGTACCCTCCTGTCCTAGGTCATTTATATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp TTCTTTTATTTTCTTGTGCTTCTAGATGCCTCTGTCCTATCCCTGCCTGGCCTCGGGGGCCGTGGGAGCTaGGAGAGCCATGGGATGGGG +
Preference number: 4 (lower is better)
Translates to: FFYFLVLLDASVLSLPGLGGRGS*ESHGMG
Trigger: CCCCATCCCATGGCTCTCCCAGCTCCCACGGCCCCC...GAGGCCAGGCAGGGATAGGACAGAGGCATCTAGAAGCACAAGAAAATAAAAGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp GATATAAATGACCTAGGACAGGAGGGTACAGTCACAGGACCTCAGACTCAGGACAGTAGGATGGGTAGCTaGGGGGCCGTGGGAGCTGGG +
Preference number: 4 (lower is better)
Translates to: DINDLGQEGTVTGPQTQDSRMGS*GAVGAG
Trigger: CCCAGCTCCCACGGCCCCCCAGCTACCCATCCTACT...GTCCTGAGTCTGAGGTCCTGTGACTGTACCCTCCTGTCCTAGGTCATTTATATC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp GATATAAATGACCTAGGACAGGAGGGTACAGTCACAGGACCTCAGACTCAGGACTGCGCCCCCTGCTGGTaGAGGATGGCGTTTGCAGGC +
Preference number: 4 (lower is better)
Translates to: DINDLGQEGTVTGPQTQDCAPCW*RMAFAG
Trigger: GCCTGCAAACGCCATCCTCCACCAGCAGGGGGCGCA...GTCCTGAGTCTGAGGTCCTGTGACTGTACCCTCCTGTCCTAGGTCATTTATATC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR GCA 90 bp GTACAGTCACAGGACCTCAGACTCAGGACGTGGTGCAAACAGACCCATGGGCTCAGGAACTTTGCCAGGTaGATGACGGTCATGGCTGCT +
Preference number: 4 (lower is better)
Translates to: VQSQDLRLRTWCKQTHGLRNFAR*MTVMAA
Trigger: AGCAGCCATGACCGTCATGCACCTGGCAAAGTTCCT...GAGCCCATGGGTCTGTTTGCACCACGTCCTGAGTCTGAGGTCCTGTGACTGTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR GCA 90 bp GAGGCAGTGGACTGGAGGGCTGTTGGCTTTTGGCAGAACTGGAGTCTGTGCTTGAGGAACTTTGCCAGGTaGATGACGGTCATGGCTGCT +
Preference number: 4 (lower is better)
Translates to: EAVDWRAVGFWQNWSLCLRNFAR*MTVMAA
Trigger: AGCAGCCATGACCGTCATGCACCTGGCAAAGTTCCT...CAAGCACAGACTCCAGTTCTGCCAAAAGCCAACAGCCCTCCAGTCCACTGCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAACGCCTCGGTCCTCGTTaGAGCCGTTGGGGACCTCTG +
Preference number: 4 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKRLGPR*SRWGPL
Trigger: CAGAGGTCCCCAACGGCTCCAACGAGGACCGAGGCG...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAAAGGTGGCCGGAAGGGTaGCAGGGCTGGGAGCCTTGT +
Preference number: 4 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKRWPEG*QGWEPC
Trigger: ACAAGGCTCCCAGCCCTGCCACCCTTCCGGCCACCT...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp AAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAAGGTGGCCGGAAGGGTaGCAGGGCTGGGAGCCTTGT +
Preference number: 4 (lower is better)
Translates to: KPTSHSENGRNQGKSKVERWPEG*QGWEPC
Trigger: ACAAGGCTCCCAGCCCTGCCACCCTTCCGGCCACCT...TTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp AAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAATGGGGTCGCAGGGCTaGGCAAGGAGGAGGAGGTGG +
Preference number: 4 (lower is better)
Translates to: KPTSHSENGRNQGKSKVEMGSQG*ARRRRW
Trigger: CCACCTCCTCCTCCTTGCCCAGCCCTGCGACCCCAT...TTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp AAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAGAGCTGGGAGAGCCATaGGATGGGGTCGCAGGGCTG +
Preference number: 4 (lower is better)
Translates to: KPTSHSENGRNQGKSKVEELGEP*DGVAGL
Trigger: CAGCCCTGCGACCCCATCCCATGGCTCTCCCAGCTC...TTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAAGAGCTGGGAGAGCCATaGGATGGGGTCGCAGGGCTG +
Preference number: 4 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKELGEP*DGVAGL
Trigger: CAGCCCTGCGACCCCATCCCATGGCTCTCCCAGCTC...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp CCAAGAGATATAAATGACCTAGGACAGGAGGGTACAGTCACAGGACCTCAGACTGAGCTGGGAGAGCCATaGGATGGGGTCGCAGGGCTG +
Preference number: 4 (lower is better)
Translates to: PRDINDLGQEGTVTGPQTELGEP*DGVAGL
Trigger: CAGCCCTGCGACCCCATCCCATGGCTCTCCCAGCTC...AGTCTGAGGTCCTGTGACTGTACCCTCCTGTCCTAGGTCATTTATATCTCTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp AAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAAGTAGGATGGGTAGCTaGGGGGCCGTGGGAGCTGGG +
Preference number: 4 (lower is better)
Translates to: KPTSHSENGRNQGKSKVESRMGS*GAVGAG
Trigger: CCCAGCTCCCACGGCCCCCCAGCTACCCATCCTACT...TTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp AAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAATGCGCCCCCTGCTGGTaGAGGATGGCGTTTGCAGGC +
Preference number: 4 (lower is better)
Translates to: KPTSHSENGRNQGKSKVECAPCW*RMAFAG
Trigger: GCCTGCAAACGCCATCCTCCACCAGCAGGGGGCGCA...TTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAATGCGCCCCCTGCTGGTaGAGGATGGCGTTTGCAGGC +
Preference number: 4 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKCAPCW*RMAFAG
Trigger: GCCTGCAAACGCCATCCTCCACCAGCAGGGGGCGCA...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR TCA 90 bp AAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAGGTCCCAGCGGCAGTTaGAGGTGGAGTGGGGGAAGT +
Preference number: 4 (lower is better)
Translates to: KPTSHSENGRNQGKSKVEGPSGS*RWSGGS
Trigger: ACTTCCCCCACTCCACCTTCAACTGCCGCTGGGACC...TTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR TCA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAAGGTCCCAGCGGCAGTTaGAGGTGGAGTGGGGGAAGT +
Preference number: 4 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKGPSGS*RWSGGS
Trigger: ACTTCCCCCACTCCACCTTCAACTGCCGCTGGGACC...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR GCA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAACCCCGCTGGTGTTGGTaGCTTCTGAGGGGGTTGGCA +
Preference number: 4 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKPRWCW*LLRGLA
Trigger: TGCCAACCCCCTCAGAAGGCACCAACACCAGCGGGG...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp AGGGCTGTTGGCTTTTGGCAGAACTGGAGTCTGTGCTTGTCTGGGGCCACCCTCTGGGGCAGTATTTGTTaGTCTCCAAGTAGCGTACGA +
Preference number: 4 (lower is better)
Translates to: RAVGFWQNWSLCLSGATLWGSIC*SPSSVR
Trigger: TCGTACGCTACTTGGAGACCAACAAATACTGCCCCA...GAGGGTGGCCCCAGACAAGCACAGACTCCAGTTCTGCCAAAAGCCAACAGCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp GGGCTGTTGGCTTTTGGCAGAACTGGAGTCTGTGCTTGTCTGGGGCCACCCTCTAGTGGTCGAGTTTTATaGACCTGGACGTCACACATG +
Preference number: 4 (lower is better)
Translates to: GLLAFGRTGVCACLGPPSSGRVL*TWTSHM
Trigger: CATGTGTGACGTCCAGGTCCATAAAACTCGACCACT...AGAGGGTGGCCCCAGACAAGCACAGACTCCAGTTCTGCCAAAAGCCAACAGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp AGGGCTGTTGGCTTTTGGCAGAACTGGAGTCTGTGCTTGTCTGGGGCCACCCTCAGTGGTCGAGTTTTATaGACCTGGACGTCACACATG +
Preference number: 4 (lower is better)
Translates to: RAVGFWQNWSLCLSGATLSGRVL*TWTSHM
Trigger: CATGTGTGACGTCCAGGTCCATAAAACTCGACCACT...GAGGGTGGCCCCAGACAAGCACAGACTCCAGTTCTGCCAAAAGCCAACAGCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp AAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAGACGGTCATGGCTGCTaGGCACCGCAGGAATCGCAC +
Preference number: 4 (lower is better)
Translates to: KPTSHSENGRNQGKSKVEDGHGC*APQESH
Trigger: GTGCGATTCCTGCGGTGCCCAGCAGCCATGACCGTC...TTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAAGACGGTCATGGCTGCTaGGCACCGCAGGAATCGCAC +
Preference number: 4 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKDGHGC*APQESH
Trigger: GTGCGATTCCTGCGGTGCCCAGCAGCCATGACCGTC...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAACGCTTGCAGGCTGGCTaGACACGGTACTTGAGGGGG +
Preference number: 4 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKRLQAG*TRYLRG
Trigger: CCCCCTCAAGTACCGTGTCCAGCCAGCCTGCAAGCG...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp AAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAACGCTTGCAGGCTGGCTaGACACGGTACTTGAGGGGG +
Preference number: 4 (lower is better)
Translates to: KPTSHSENGRNQGKSKVERLQAG*TRYLRG
Trigger: CCCCCTCAAGTACCGTGTCCAGCCAGCCTGCAAGCG...TTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp GATATAAATGACCTAGGACAGGAGGGTACAGTCACAGGACCTCAGACTCAGGACATGCCCCGCTGGTGTTaGTGCCTTCTGAGGGGGTTG +
Preference number: 4 (lower is better)
Translates to: DINDLGQEGTVTGPQTQDMPRWC*CLLRGL
Trigger: CAACCCCCTCAGAAGGCACCAACACCAGCGGGGCAT...GTCCTGAGTCTGAGGTCCTGTGACTGTACCCTCCTGTCCTAGGTCATTTATATC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR TCA 90 bp AAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAACACAGAGGGCACACATaGGGTGAGGGTTCAGCTCCG +
Preference number: 4 (lower is better)
Translates to: KPTSHSENGRNQGKSKVEHRGHT*GEGSAP
Trigger: CGGAGCTGAACCCTCACCTCATGTGTGCCCTCTGTG...TTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR TCA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAACACAGAGGGCACACATaGGGTGAGGGTTCAGCTCCG +
Preference number: 4 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKHRGHT*GEGSAP
Trigger: CGGAGCTGAACCCTCACCTCATGTGTGCCCTCTGTG...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR TCA 90 bp TTGGCTTTTGGCAGAACTGGAGTCTGTGCTTGTCTGGGGCCACCCTCTACTCTAGGGTTTTGTCTGATCTaGTGCTCAGCAGTGGTCGAG +
Preference number: 4 (lower is better)
Translates to: LAFGRTGVCACLGPPSTLGFCLI*CSAVVE
Trigger: CTCGACCACTGCTGAGCATCAGATCAGACAAAACCC...TAGAGTAGAGGGTGGCCCCAGACAAGCACAGACTCCAGTTCTGCCAAAAGCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR TCA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAAACTTTGCCAGGTGCATaGCGGTCATGGCTGCTGGGC +
Preference number: 4 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKTLPGA*RSWLLG
Trigger: GCCCAGCAGCCATGACCGTCATGCACCTGGCAAAGT...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR GCA 90 bp AGGGCTGTTGGCTTTTGGCAGAACTGGAGTCTGTGCTTGTCTGGGGCCACCCTCCCAAGTAGCGTACGATaGAGGTTTTGCAGAAGGAAT +
Preference number: 4 (lower is better)
Translates to: RAVGFWQNWSLCLSGATLPSSVR*RFCRRN
Trigger: ATTCCTTCTGCAAAACCTGCATCGTACGCTACTTGG...GAGGGTGGCCCCAGACAAGCACAGACTCCAGTTCTGCCAAAAGCCAACAGCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR GCA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAACATGACGGTCATGGCTaGTGGGCACCGCAGGAATCG +
Preference number: 4 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKHDGHG*WAPQES
Trigger: CGATTCCTGCGGTGCCCAGCAGCCATGACCGTCATG...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR GCA 90 bp CCAAGAGATATAAATGACCTAGGACAGGAGGGTACAGTCACAGGACCTCAGACTCATGACGGTCATGGCTaGTGGGCACCGCAGGAATCG +
Preference number: 4 (lower is better)
Translates to: PRDINDLGQEGTVTGPQTHDGHG*WAPQES
Trigger: CGATTCCTGCGGTGCCCAGCAGCCATGACCGTCATG...AGTCTGAGGTCCTGTGACTGTACCCTCCTGTCCTAGGTCATTTATATCTCTTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp GAGGCAGTGGACTGGAGGGCTGTTGGCTTTTGGCAGAACTGGAGTCTGTGCTTGTGGGGCAGTATTTGTTaGTCTCCAAGTAGCGTACGA +
Preference number: 4 (lower is better)
Translates to: EAVDWRAVGFWQNWSLCLWGSIC*SPSSVR
Trigger: TCGTACGCTACTTGGAGACCAACAAATACTGCCCCA...CAAGCACAGACTCCAGTTCTGCCAAAAGCCAACAGCCCTCCAGTCCACTGCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp TTGGCTTTTGGCAGAACTGGAGTCTGTGCTTGTCTGGGGCCACCCTCTACTCTACGAGTTTTATGGACCTaGACGTCACACATGGGGCAG +
Preference number: 4 (lower is better)
Translates to: LAFGRTGVCACLGPPSTLRVLWT*TSHMGQ
Trigger: CTGCCCCATGTGTGACGTCCAGGTCCATAAAACTCG...TAGAGTAGAGGGTGGCCCCAGACAAGCACAGACTCCAGTTCTGCCAAAAGCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp GTACAGTCACAGGACCTCAGACTCAGGACGTGGTGCAAACAGACCCATGGGCTCCCACCTTGTACTTGCTaGGCACATCCATTTTGTTGC +
Preference number: 4 (lower is better)
Translates to: VQSQDLRLRTWCKQTHGLPPCTC*AHPFCC
Trigger: GCAACAAAATGGATGTGCCCAGCAAGTACAAGGTGG...GAGCCCATGGGTCTGTTTGCACCACGTCCTGAGTCTGAGGTCCTGTGACTGTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp AAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAGAGCCGCTTGCAGGCTaGCTGGACACGGTACTTGAG +
Preference number: 4 (lower is better)
Translates to: KPTSHSENGRNQGKSKVEEPLAG*LDTVLE
Trigger: CTCAAGTACCGTGTCCAGCCAGCCTGCAAGCGGCTC...TTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp AAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAATGCCCCGCTGGTGTTaGTGCCTTCTGAGGGGGTTG +
Preference number: 4 (lower is better)
Translates to: KPTSHSENGRNQGKSKVEMPRWC*CLLRGL
Trigger: CAACCCCCTCAGAAGGCACCAACACCAGCGGGGCAT...TTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp GATATAAATGACCTAGGACAGGAGGGTACAGTCACAGGACCTCAGACTCAGGACACTCTGATGCCCCGCTaGTGTTGGTGCCTTCTGAGG +
Preference number: 4 (lower is better)
Translates to: DINDLGQEGTVTGPQTQDTLMPR*CWCLLR
Trigger: CCTCAGAAGGCACCAACACCAGCGGGGCATCAGAGT...GTCCTGAGTCTGAGGTCCTGTGACTGTACCCTCCTGTCCTAGGTCATTTATATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp TTTATAAAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGCAAGGAGGAGGAGGTaGCCGGAAGGGTGGCAGGGC +
Preference number: 4 (lower is better)
Translates to: FIKPTSHSENGRNQGKSKARRRR*PEGWQG
Trigger: GCCCTGCCACCCTTCCGGCCACCTCCTCCTCCTTGC...TTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTTTATAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp AAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAATCTTGCGCCCCCTGCTaGTGGAGGATGGCGTTTGCA +
Preference number: 4 (lower is better)
Translates to: KPTSHSENGRNQGKSKVESCAPC*WRMAFA
Trigger: TGCAAACGCCATCCTCCACCAGCAGGGGGCGCAAGA...TTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR TCA 90 bp TTCTTTTATTTTCTTGTGCTTCTAGATGCCTCTGTCCTATCCCTGCCTGGCCTCACTTTGCCAGGTGCATaGCGGTCATGGCTGCTGGGC +
Preference number: 4 (lower is better)
Translates to: FFYFLVLLDASVLSLPGLTLPGA*RSWLLG
Trigger: GCCCAGCAGCCATGACCGTCATGCACCTGGCAAAGT...GAGGCCAGGCAGGGATAGGACAGAGGCATCTAGAAGCACAAGAAAATAAAAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR GCA 90 bp AAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAATGTCAGGGGGTATGCTaGATAGAAGTCCCGTCGCCG +
Preference number: 4 (lower is better)
Translates to: KPTSHSENGRNQGKSKVECQGVC*IEVPSP
Trigger: CGGCGACGGGACTTCTATGCAGCATACCCCCTGACA...TTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR GCA 90 bp GAGGCAGTGGACTGGAGGGCTGTTGGCTTTTGGCAGAACTGGAGTCTGTGCTTGTCTCCACCTTGTACTTaGTGGGCACATCCATTTTGT +
Preference number: 4 (lower is better)
Translates to: EAVDWRAVGFWQNWSLCLSPPCT*WAHPFC
Trigger: ACAAAATGGATGTGCCCAGCAAGTACAAGGTGGAGA...CAAGCACAGACTCCAGTTCTGCCAAAAGCCAACAGCCCTCCAGTCCACTGCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR GCA 90 bp AAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAATCATCTTGCGCCCCCTaGTGGTGGAGGATGGCGTTT +
Preference number: 4 (lower is better)
Translates to: KPTSHSENGRNQGKSKVESSCAP*WWRMAF
Trigger: AAACGCCATCCTCCACCAGCAGGGGGCGCAAGATGA...TTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp TTCTTTTATTTTCTTGTGCTTCTAGATGCCTCTGTCCTATCCCTGCCTGGCCTCGAGCCGCTTGCAGGCTaGCTGGACACGGTACTTGAG +
Preference number: 4 (lower is better)
Translates to: FFYFLVLLDASVLSLPGLEPLAG*LDTVLE
Trigger: CTCAAGTACCGTGTCCAGCCAGCCTGCAAGCGGCTC...GAGGCCAGGCAGGGATAGGACAGAGGCATCTAGAAGCACAAGAAAATAAAAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAAACTCTGATGCCCCGCTaGTGTTGGTGCCTTCTGAGG +
Preference number: 4 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKTLMPR*CWCLLR
Trigger: CCTCAGAAGGCACCAACACCAGCGGGGCATCAGAGT...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp AAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAACTCTGATGCCCCGCTaGTGTTGGTGCCTTCTGAGG +
Preference number: 4 (lower is better)
Translates to: KPTSHSENGRNQGKSKVETLMPR*CWCLLR
Trigger: CCTCAGAAGGCACCAACACCAGCGGGGCATCAGAGT...TTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp TTTATAAAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAATGGGGTCGCAGGGCTaGGCAAGGAGGAGGAGGTGG +
Preference number: 4 (lower is better)
Translates to: FIKPTSHSENGRNQGKSKMGSQG*ARRRRW
Trigger: CCACCTCCTCCTCCTTGCCCAGCCCTGCGACCCCAT...TTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTTTATAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp TTTATAAAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGAGCTGGGAGAGCCATaGGATGGGGTCGCAGGGCTG +
Preference number: 4 (lower is better)
Translates to: FIKPTSHSENGRNQGKSKELGEP*DGVAGL
Trigger: CAGCCCTGCGACCCCATCCCATGGCTCTCCCAGCTC...TTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTTTATAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp TTTATAAAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAAGTAGGATGGGTAGCTaGGGGGCCGTGGGAGCTGGG +
Preference number: 4 (lower is better)
Translates to: FIKPTSHSENGRNQGKSKSRMGS*GAVGAG
Trigger: CCCAGCTCCCACGGCCCCCCAGCTACCCATCCTACT...TTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTTTATAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAACCTGCTGGTGGAGGATaGCGTTTGCAGGCAGTTCGA +
Preference number: 4 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKPAGGG*RLQAVR
Trigger: TCGAACTGCCTGCAAACGCCATCCTCCACCAGCAGG...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp AAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAACCTGCTGGTGGAGGATaGCGTTTGCAGGCAGTTCGA +
Preference number: 4 (lower is better)
Translates to: KPTSHSENGRNQGKSKVEPAGGG*RLQAVR
Trigger: TCGAACTGCCTGCAAACGCCATCCTCCACCAGCAGG...TTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp TTCTTTTATTTTCTTGTGCTTCTAGATGCCTCTGTCCTATCCCTGCCTGGCCTCTCTTGCGCCCCCTGCTaGTGGAGGATGGCGTTTGCA +
Preference number: 4 (lower is better)
Translates to: FFYFLVLLDASVLSLPGLSCAPC*WRMAFA
Trigger: TGCAAACGCCATCCTCCACCAGCAGGGGGCGCAAGA...GAGGCCAGGCAGGGATAGGACAGAGGCATCTAGAAGCACAAGAAAATAAAAGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR TCA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAAAGGGCACACATGAGGTaGGGGTTCAGCTCCGTGATT +
Preference number: 4 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKRAHMR*GFSSVI
Trigger: AATCACGGAGCTGAACCCTCACCTCATGTGTGCCCT...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR TCA 90 bp ACACAGACTGCATTTGTGAAAGGCACTGACTGTCTCAGCAACTCTGAACATTCAACTTTGCCAGGTGCATaGCGGTCATGGCTGCTGGGC +
Preference number: 4 (lower is better)
Translates to: TQTAFVKGTDCLSNSEHSTLPGA*RSWLLG
Trigger: GCCCAGCAGCCATGACCGTCATGCACCTGGCAAAGT...TGAATGTTCAGAGTTGCTGAGACAGTCAGTGCCTTTCACAAATGCAGTCTGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR TCA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAATGGGAGCCTTGTCGCTaGCTGACTCACACTCTGATG +
Preference number: 4 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKWEPCR*LTHTLM
Trigger: CATCAGAGTGTGAGTCAGTCAGCGACAAGGCTCCCA...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR TCA 90 bp AAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAATGGGAGCCTTGTCGCTaGCTGACTCACACTCTGATG +
Preference number: 4 (lower is better)
Translates to: KPTSHSENGRNQGKSKVEWEPCR*LTHTLM
Trigger: CATCAGAGTGTGAGTCAGTCAGCGACAAGGCTCCCA...TTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR TCA 90 bp TTTATAAAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGGTCCCAGCGGCAGTTaGAGGTGGAGTGGGGGAAGT +
Preference number: 4 (lower is better)
Translates to: FIKPTSHSENGRNQGKSKGPSGS*RWSGGS
Trigger: ACTTCCCCCACTCCACCTTCAACTGCCGCTGGGACC...TTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTTTATAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR GCA 90 bp AAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAACTCTGTCAGGGGGTATaGTGCATAGAAGTCCCGTCG +
Preference number: 4 (lower is better)
Translates to: KPTSHSENGRNQGKSKVELCQGV*CIEVPS
Trigger: CGACGGGACTTCTATGCAGCATACCCCCTGACAGAG...TTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR GCA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAACTCTGTCAGGGGGTATaGTGCATAGAAGTCCCGTCG +
Preference number: 4 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKLCQGV*CIEVPS
Trigger: CGACGGGACTTCTATGCAGCATACCCCCTGACAGAG...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp ACACACACACACGAGTTTCCTGTGGCATTTAAATTAATCTGGTTGGTCCATAGACGCCTCGGTCCTCGTTaGAGCCGTTGGGGACCTCTG +
Preference number: 4 (lower is better)
Translates to: THTHEFPVAFKLIWLVHRRLGPR*SRWGPL
Trigger: CAGAGGTCCCCAACGGCTCCAACGAGGACCGAGGCG...TCTATGGACCAACCAGATTAATTTAAATGCCACAGGAAACTCGTGTGTGTGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp TTTATAAAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGACGGTCATGGCTGCTaGGCACCGCAGGAATCGCAC +
Preference number: 4 (lower is better)
Translates to: FIKPTSHSENGRNQGKSKDGHGC*APQESH
Trigger: GTGCGATTCCTGCGGTGCCCAGCAGCCATGACCGTC...TTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTTTATAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp TTTATAAAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAACGCTTGCAGGCTGGCTaGACACGGTACTTGAGGGGG +
Preference number: 4 (lower is better)
Translates to: FIKPTSHSENGRNQGKSKRLQAG*TRYLRG
Trigger: CCCCCTCAAGTACCGTGTCCAGCCAGCCTGCAAGCG...TTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTTTATAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp ACACACACACACGAGTTTCCTGTGGCATTTAAATTAATCTGGTTGGTCCATAGAAGTAGGATGGGTAGCTaGGGGGCCGTGGGAGCTGGG +
Preference number: 4 (lower is better)
Translates to: THTHEFPVAFKLIWLVHRSRMGS*GAVGAG
Trigger: CCCAGCTCCCACGGCCCCCCAGCTACCCATCCTACT...TCTATGGACCAACCAGATTAATTTAAATGCCACAGGAAACTCGTGTGTGTGTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR TCA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAAGGGTTTTGTCTGATCTaGTGCTCAGCAGTGGTCGAG +
Preference number: 4 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKGFCLI*CSAVVE
Trigger: CTCGACCACTGCTGAGCATCAGATCAGACAAAACCC...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR TCA 90 bp CCAAGAGATATAAATGACCTAGGACAGGAGGGTACAGTCACAGGACCTCAGACTGGGTTTTGTCTGATCTaGTGCTCAGCAGTGGTCGAG +
Preference number: 4 (lower is better)
Translates to: PRDINDLGQEGTVTGPQTGFCLI*CSAVVE
Trigger: CTCGACCACTGCTGAGCATCAGATCAGACAAAACCC...AGTCTGAGGTCCTGTGACTGTACCCTCCTGTCCTAGGTCATTTATATCTCTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR TCA 90 bp TTTATAAAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAACTTTGCCAGGTGCATaGCGGTCATGGCTGCTGGGC +
Preference number: 4 (lower is better)
Translates to: FIKPTSHSENGRNQGKSKTLPGA*RSWLLG
Trigger: GCCCAGCAGCCATGACCGTCATGCACCTGGCAAAGT...TTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTTTATAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR GCA 90 bp TTCTTTTATTTTCTTGTGCTTCTAGATGCCTCTGTCCTATCCCTGCCTGGCCTCCTCTGTCAGGGGGTATaGTGCATAGAAGTCCCGTCG +
Preference number: 4 (lower is better)
Translates to: FFYFLVLLDASVLSLPGLLCQGV*CIEVPS
Trigger: CGACGGGACTTCTATGCAGCATACCCCCTGACAGAG...GAGGCCAGGCAGGGATAGGACAGAGGCATCTAGAAGCACAAGAAAATAAAAGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR GCA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAAAGGAACTTTGCCAGGTaGATGACGGTCATGGCTGCT +
Preference number: 4 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKRNFAR*MTVMAA
Trigger: AGCAGCCATGACCGTCATGCACCTGGCAAAGTTCCT...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR GCA 90 bp AAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAAGGAACTTTGCCAGGTaGATGACGGTCATGGCTGCT +
Preference number: 4 (lower is better)
Translates to: KPTSHSENGRNQGKSKVERNFAR*MTVMAA
Trigger: AGCAGCCATGACCGTCATGCACCTGGCAAAGTTCCT...TTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR GCA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAAGTTGCGGAGGAACTTTaGCAGGTGCATGACGGTCAT +
Preference number: 4 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKVAEEL*QVHDGH
Trigger: ATGACCGTCATGCACCTGGCAAAGTTCCTCCGCAAC...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR GCA 90 bp CCAAGAGATATAAATGACCTAGGACAGGAGGGTACAGTCACAGGACCTCAGACTGTTGCGGAGGAACTTTaGCAGGTGCATGACGGTCAT +
Preference number: 4 (lower is better)
Translates to: PRDINDLGQEGTVTGPQTVAEEL*QVHDGH
Trigger: ATGACCGTCATGCACCTGGCAAAGTTCCTCCGCAAC...AGTCTGAGGTCCTGTGACTGTACCCTCCTGTCCTAGGTCATTTATATCTCTTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp GATATAAATGACCTAGGACAGGAGGGTACAGTCACAGGACCTCAGACTCAGGACCCTGGACGTCACACATaGGGCAGTATTTGTTGGTCT +
Preference number: 4 (lower is better)
Translates to: DINDLGQEGTVTGPQTQDPGRHT*GSICWS
Trigger: AGACCAACAAATACTGCCCCATGTGTGACGTCCAGG...GTCCTGAGTCTGAGGTCCTGTGACTGTACCCTCCTGTCCTAGGTCATTTATATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp AAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAACGAGTTTTATGGACCTaGACGTCACACATGGGGCAG +
Preference number: 4 (lower is better)
Translates to: KPTSHSENGRNQGKSKVERVLWT*TSHMGQ
Trigger: CTGCCCCATGTGTGACGTCCAGGTCCATAAAACTCG...TTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp TTTATAAAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGAGCCGCTTGCAGGCTaGCTGGACACGGTACTTGAG +
Preference number: 4 (lower is better)
Translates to: FIKPTSHSENGRNQGKSKEPLAG*LDTVLE
Trigger: CTCAAGTACCGTGTCCAGCCAGCCTGCAAGCGGCTC...TTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTTTATAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp TTTATAAAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAATGCCCCGCTGGTGTTaGTGCCTTCTGAGGGGGTTG +
Preference number: 4 (lower is better)
Translates to: FIKPTSHSENGRNQGKSKMPRWC*CLLRGL
Trigger: CAACCCCCTCAGAAGGCACCAACACCAGCGGGGCAT...TTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTTTATAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp TTTATAAAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAATCTTGCGCCCCCTGCTaGTGGAGGATGGCGTTTGCA +
Preference number: 4 (lower is better)
Translates to: FIKPTSHSENGRNQGKSKSCAPC*WRMAFA
Trigger: TGCAAACGCCATCCTCCACCAGCAGGGGGCGCAAGA...TTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTTTATAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAACCTGGACGTCACACATaGGGCAGTATTTGTTGGTCT +
Preference number: 4 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKPGRHT*GSICWS
Trigger: AGACCAACAAATACTGCCCCATGTGTGACGTCCAGG...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp TTTATAAAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAACTCTGATGCCCCGCTaGTGTTGGTGCCTTCTGAGG +
Preference number: 4 (lower is better)
Translates to: FIKPTSHSENGRNQGKSKTLMPR*CWCLLR
Trigger: CCTCAGAAGGCACCAACACCAGCGGGGCATCAGAGT...TTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTTTATAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp TTTATAAAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAACCTGCTGGTGGAGGATaGCGTTTGCAGGCAGTTCGA +
Preference number: 4 (lower is better)
Translates to: FIKPTSHSENGRNQGKSKPAGGG*RLQAVR
Trigger: TCGAACTGCCTGCAAACGCCATCCTCCACCAGCAGG...TTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTTTATAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR TCA 90 bp TTTATAAAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAAGGGCACACATGAGGTaGGGGTTCAGCTCCGTGATT +
Preference number: 4 (lower is better)
Translates to: FIKPTSHSENGRNQGKSKRAHMR*GFSSVI
Trigger: AATCACGGAGCTGAACCCTCACCTCATGTGTGCCCT...TTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTTTATAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR TCA 90 bp TTTATAAAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAATGGGAGCCTTGTCGCTaGCTGACTCACACTCTGATG +
Preference number: 4 (lower is better)
Translates to: FIKPTSHSENGRNQGKSKWEPCR*LTHTLM
Trigger: CATCAGAGTGTGAGTCAGTCAGCGACAAGGCTCCCA...TTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTTTATAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAATGGGGCAGTATTTGTTaGTCTCCAAGTAGCGTACGA +
Preference number: 4 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKWGSIC*SPSSVR
Trigger: TCGTACGCTACTTGGAGACCAACAAATACTGCCCCA...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp ACACAGACTGCATTTGTGAAAGGCACTGACTGTCTCAGCAACTCTGAACATTCACGAGTTTTATGGACCTaGACGTCACACATGGGGCAG +
Preference number: 4 (lower is better)
Translates to: TQTAFVKGTDCLSNSEHSRVLWT*TSHMGQ
Trigger: CTGCCCCATGTGTGACGTCCAGGTCCATAAAACTCG...TGAATGTTCAGAGTTGCTGAGACAGTCAGTGCCTTTCACAAATGCAGTCTGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp AAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAAGTGGTCGAGTTTTATaGACCTGGACGTCACACATG +
Preference number: 4 (lower is better)
Translates to: KPTSHSENGRNQGKSKVESGRVL*TWTSHM
Trigger: CATGTGTGACGTCCAGGTCCATAAAACTCGACCACT...TTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAAAGTGGTCGAGTTTTATaGACCTGGACGTCACACATG +
Preference number: 4 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKSGRVL*TWTSHM
Trigger: CATGTGTGACGTCCAGGTCCATAAAACTCGACCACT...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAATCTGATGCTCAGCAGTaGTCGAGTTTTATGGACCTG +
Preference number: 4 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKSDAQQ*SSFMDL
Trigger: CAGGTCCATAAAACTCGACCACTGCTGAGCATCAGA...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp AAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAATCTGATGCTCAGCAGTaGTCGAGTTTTATGGACCTG +
Preference number: 4 (lower is better)
Translates to: KPTSHSENGRNQGKSKVESDAQQ*SSFMDL
Trigger: CAGGTCCATAAAACTCGACCACTGCTGAGCATCAGA...TTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAACCACCTTGTACTTGCTaGGCACATCCATTTTGTTGC +
Preference number: 4 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKPPCTC*AHPFCC
Trigger: GCAACAAAATGGATGTGCCCAGCAAGTACAAGGTGG...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp AAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAACCACCTTGTACTTGCTaGGCACATCCATTTTGTTGC +
Preference number: 4 (lower is better)
Translates to: KPTSHSENGRNQGKSKVEPPCTC*AHPFCC
Trigger: GCAACAAAATGGATGTGCCCAGCAAGTACAAGGTGG...TTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR TCA 90 bp ACACACACACACGAGTTTCCTGTGGCATTTAAATTAATCTGGTTGGTCCATAGAAGGGCACACATGAGGTaGGGGTTCAGCTCCGTGATT +
Preference number: 4 (lower is better)
Translates to: THTHEFPVAFKLIWLVHRRAHMR*GFSSVI
Trigger: AATCACGGAGCTGAACCCTCACCTCATGTGTGCCCT...TCTATGGACCAACCAGATTAATTTAAATGCCACAGGAAACTCGTGTGTGTGTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR TCA 90 bp TTTATAAAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGGGTTTTGTCTGATCTaGTGCTCAGCAGTGGTCGAG +
Preference number: 4 (lower is better)
Translates to: FIKPTSHSENGRNQGKSKGFCLI*CSAVVE
Trigger: CTCGACCACTGCTGAGCATCAGATCAGACAAAACCC...TTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTTTATAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR TCA 90 bp ACACACACACACGAGTTTCCTGTGGCATTTAAATTAATCTGGTTGGTCCATAGATGGGAGCCTTGTCGCTaGCTGACTCACACTCTGATG +
Preference number: 4 (lower is better)
Translates to: THTHEFPVAFKLIWLVHRWEPCR*LTHTLM
Trigger: CATCAGAGTGTGAGTCAGTCAGCGACAAGGCTCCCA...TCTATGGACCAACCAGATTAATTTAAATGCCACAGGAAACTCGTGTGTGTGTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR GCA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAACCAAGTAGCGTACGATaGAGGTTTTGCAGAAGGAAT +
Preference number: 4 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKPSSVR*RFCRRN
Trigger: ATTCCTTCTGCAAAACCTGCATCGTACGCTACTTGG...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR GCA 90 bp AAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAATCTCCACCTTGTACTTaGTGGGCACATCCATTTTGT +
Preference number: 4 (lower is better)
Translates to: KPTSHSENGRNQGKSKVESPPCT*WAHPFC
Trigger: ACAAAATGGATGTGCCCAGCAAGTACAAGGTGGAGA...TTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR GCA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAATCTCCACCTTGTACTTaGTGGGCACATCCATTTTGT +
Preference number: 4 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKSPPCT*WAHPFC
Trigger: ACAAAATGGATGTGCCCAGCAAGTACAAGGTGGAGA...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp TTTATAAAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAACGAGTTTTATGGACCTaGACGTCACACATGGGGCAG +
Preference number: 4 (lower is better)
Translates to: FIKPTSHSENGRNQGKSKRVLWT*TSHMGQ
Trigger: CTGCCCCATGTGTGACGTCCAGGTCCATAAAACTCG...TTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTTTATAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp TTCTTTTATTTTCTTGTGCTTCTAGATGCCTCTGTCCTATCCCTGCCTGGCCTCTCTGATGCTCAGCAGTaGTCGAGTTTTATGGACCTG +
Preference number: 4 (lower is better)
Translates to: FFYFLVLLDASVLSLPGLSDAQQ*SSFMDL
Trigger: CAGGTCCATAAAACTCGACCACTGCTGAGCATCAGA...GAGGCCAGGCAGGGATAGGACAGAGGCATCTAGAAGCACAAGAAAATAAAAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR GCA 90 bp ACACACACACACGAGTTTCCTGTGGCATTTAAATTAATCTGGTTGGTCCATAGAGTTGCGGAGGAACTTTaGCAGGTGCATGACGGTCAT +
Preference number: 4 (lower is better)
Translates to: THTHEFPVAFKLIWLVHRVAEEL*QVHDGH
Trigger: ATGACCGTCATGCACCTGGCAAAGTTCCTCCGCAAC...TCTATGGACCAACCAGATTAATTTAAATGCCACAGGAAACTCGTGTGTGTGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp ACACAGACTGCATTTGTGAAAGGCACTGACTGTCTCAGCAACTCTGAACATTCATCTGATGCTCAGCAGTaGTCGAGTTTTATGGACCTG +
Preference number: 4 (lower is better)
Translates to: TQTAFVKGTDCLSNSEHSSDAQQ*SSFMDL
Trigger: CAGGTCCATAAAACTCGACCACTGCTGAGCATCAGA...TGAATGTTCAGAGTTGCTGAGACAGTCAGTGCCTTTCACAAATGCAGTCTGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CCA 90 bp TTTATAAAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAACCACCTTGTACTTGCTaGGCACATCCATTTTGTTGC +
Preference number: 4 (lower is better)
Translates to: FIKPTSHSENGRNQGKSKPPCTC*AHPFCC
Trigger: GCAACAAAATGGATGTGCCCAGCAAGTACAAGGTGG...TTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTTTATAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR GCA 90 bp TTTATAAAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAACCAAGTAGCGTACGATaGAGGTTTTGCAGAAGGAAT +
Preference number: 4 (lower is better)
Translates to: FIKPTSHSENGRNQGKSKPSSVR*RFCRRN
Trigger: ATTCCTTCTGCAAAACCTGCATCGTACGCTACTTGG...TTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTTTATAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR GCA 90 bp ACACACACACACGAGTTTCCTGTGGCATTTAAATTAATCTGGTTGGTCCATAGACCAAGTAGCGTACGATaGAGGTTTTGCAGAAGGAAT +
Preference number: 4 (lower is better)
Translates to: THTHEFPVAFKLIWLVHRPSSVR*RFCRRN
Trigger: ATTCCTTCTGCAAAACCTGCATCGTACGCTACTTGG...TCTATGGACCAACCAGATTAATTTAAATGCCACAGGAAACTCGTGTGTGTGTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR GCA 90 bp ACACACACACACGAGTTTCCTGTGGCATTTAAATTAATCTGGTTGGTCCATAGATCTCCACCTTGTACTTaGTGGGCACATCCATTTTGT +
Preference number: 4 (lower is better)
Translates to: THTHEFPVAFKLIWLVHRSPPCT*WAHPFC
Trigger: ACAAAATGGATGTGCCCAGCAAGTACAAGGTGGAGA...TCTATGGACCAACCAGATTAATTTAAATGCCACAGGAAACTCGTGTGTGTGTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS CCA 90 bp GAGGGGGTTGGCACCGTGGGCAGGGTGAGCCGCTTGCAGGCTGGCTaGACACGGTACTTGAGGGGGAGAGGCCCATTCCTTCGCCAGGGG +
Preference number: 5 (lower is better)
Translates to: EGVGTVGRVSRLQAG*TRYLRGRGPFLRQG
Trigger: CCCCTGGCGAAGGAATGGGCCTCTCCCCCTCAAGTACCGTGTCCAGCCAGCCTGCAAGCGGCTCACCCTGCCCACGGTGCCAACCCCCTC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CAA 90 bp CTAGGACAGGAGGGTACAGTCACAGGACCTCAGACTCAGGACGTGGTGCAAACAGGCAGGGTGAGCCGCTaGCAGGCTGGCTGGACACGG +
Preference number: 5 (lower is better)
Translates to: LGQEGTVTGPQTQDVVQTGRVSR*QAGWTR
Trigger: CCGTGTCCAGCCAGCCTGCAAGCGGCTCACCCTGCC...TGTTTGCACCACGTCCTGAGTCTGAGGTCCTGTGACTGTACCCTCCTGTCCTAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CAA 90 bp TTTGGCAGAACTGGAGTCTGTGCTTGTCTGGGGCCACCCTCTACTCTAGGCCCCGGCTGGACACGGTACTaGAGGGGGAGAGGCCCATTC +
Preference number: 5 (lower is better)
Translates to: FGRTGVCACLGPPSTLGPGWTRY*RGRGPF
Trigger: GAATGGGCCTCTCCCCCTCAAGTACCGTGTCCAGCC...GGGGCCTAGAGTAGAGGGTGGCCCCAGACAAGCACAGACTCCAGTTCTGCCAAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CAA 90 bp TTGGCTTTTGGCAGAACTGGAGTCTGTGCTTGTCTGGGGCCACCCTCTACTCTAGGCAGGGTGAGCCGCTaGCAGGCTGGCTGGACACGG +
Preference number: 5 (lower is better)
Translates to: LAFGRTGVCACLGPPSTLGRVSR*QAGWTR
Trigger: CCGTGTCCAGCCAGCCTGCAAGCGGCTCACCCTGCC...TAGAGTAGAGGGTGGCCCCAGACAAGCACAGACTCCAGTTCTGCCAAAAGCCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CAA 90 bp TTTGGCAGAACTGGAGTCTGTGCTTGTCTGGGGCCACCCTCTACTCTAGGCCCCGATGCCCCGCTGGTGTaGGTGCCTTCTGAGGGGGTT +
Preference number: 5 (lower is better)
Translates to: FGRTGVCACLGPPSTLGPDAPLV*VPSEGV
Trigger: AACCCCCTCAGAAGGCACCAACACCAGCGGGGCATC...GGGGCCTAGAGTAGAGGGTGGCCCCAGACAAGCACAGACTCCAGTTCTGCCAAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS GCA 90 bp CCATTAACAGTCATCTTGCGCCCCCTGCTGGTGGAGGATGGCGTTTaGAGGCAGTTCGAAGTGCCCCCATTGGTAGCTGTGGTGGTCCCA +
Preference number: 5 (lower is better)
Translates to: PLTVILRPLLVEDGV*RQFEVPPLVAVVVP
Trigger: TGGGACCACCACAGCTACCAATGGGGGCACTTCGAACTGCCTGCAAACGCCATCCTCCACCAGCAGGGGGCGCAAGATGACTGTTAATGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS CCA 90 bp AGGAGCGCCATTAACAGTCATCTTGCGCCCCCTGCTGGTGGAGGATaGCGTTTGCAGGCAGTTCGAAGTGCCCCCATTGGTAGCTGTGGT +
Preference number: 5 (lower is better)
Translates to: RSAINSHLAPPAGGG*RLQAVRSAPIGSCG
Trigger: ACCACAGCTACCAATGGGGGCACTTCGAACTGCCTGCAAACGCCATCCTCCACCAGCAGGGGGCGCAAGATGACTGTTAATGGCGCTCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CAA 90 bp CTAGGACAGGAGGGTACAGTCACAGGACCTCAGACTCAGGACGTGGTGCAAACAGATGCCCCGCTGGTGTaGGTGCCTTCTGAGGGGGTT +
Preference number: 5 (lower is better)
Translates to: LGQEGTVTGPQTQDVVQTDAPLV*VPSEGV
Trigger: AACCCCCTCAGAAGGCACCAACACCAGCGGGGCATC...TGTTTGCACCACGTCCTGAGTCTGAGGTCCTGTGACTGTACCCTCCTGTCCTAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CAA 90 bp AGGGCTGTTGGCTTTTGGCAGAACTGGAGTCTGTGCTTGTCTGGGGCCACCCTCTTCGAAGTGCCCCCATaGGTAGCTGTGGTGGTCCCA +
Preference number: 5 (lower is better)
Translates to: RAVGFWQNWSLCLSGATLFEVPP*VAVVVP
Trigger: TGGGACCACCACAGCTACCAATGGGGGCACTTCGAA...GAGGGTGGCCCCAGACAAGCACAGACTCCAGTTCTGCCAAAAGCCAACAGCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CAA 90 bp TTTGGCAGAACTGGAGTCTGTGCTTGTCTGGGGCCACCCTCTACTCTAGGCCCCCCATTAACAGTCATCTaGCGCCCCCTGCTGGTGGAG +
Preference number: 5 (lower is better)
Translates to: FGRTGVCACLGPPSTLGPPLTVI*RPLLVE
Trigger: CTCCACCAGCAGGGGGCGCAAGATGACTGTTAATGG...GGGGCCTAGAGTAGAGGGTGGCCCCAGACAAGCACAGACTCCAGTTCTGCCAAA
59% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS GCA 90 bp CATTTTGTTGCGGAGGAACTTTGCCAGGTGCATGACGGTCATGGCTaGTGGGCACCGCAGGAATCGCACTCCTGTCTTCTCCTTGTCCCC +
Preference number: 5 (lower is better)
Translates to: HFVAEELCQVHDGHG*WAPQESHSCLLLVP
Trigger: GGGGACAAGGAGAAGACAGGAGTGCGATTCCTGCGGTGCCCAGCAGCCATGACCGTCATGCACCTGGCAAAGTTCCTCCGCAACAAAATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS CCA 90 bp TTTGTTGCGGAGGAACTTTGCCAGGTGCATGACGGTCATGGCTGCTaGGCACCGCAGGAATCGCACTCCTGTCTTCTCCTTGTCCCCATC +
Preference number: 5 (lower is better)
Translates to: FVAEELCQVHDGHGC*APQESHSCLLLVPI
Trigger: GATGGGGACAAGGAGAAGACAGGAGTGCGATTCCTGCGGTGCCCAGCAGCCATGACCGTCATGCACCTGGCAAAGTTCCTCCGCAACAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CAA 90 bp AAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAGGCAGGGTGAGCCGCTaGCAGGCTGGCTGGACACGG +
Preference number: 5 (lower is better)
Translates to: KPTSHSENGRNQGKSKVEGRVSR*QAGWTR
Trigger: CCGTGTCCAGCCAGCCTGCAAGCGGCTCACCCTGCC...TTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CAA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAAGGCAGGGTGAGCCGCTaGCAGGCTGGCTGGACACGG +
Preference number: 5 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKGRVSR*QAGWTR
Trigger: CCGTGTCCAGCCAGCCTGCAAGCGGCTCACCCTGCC...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CAA 90 bp GAGGCAGTGGACTGGAGGGCTGTTGGCTTTTGGCAGAACTGGAGTCTGTGCTTGTTCGAAGTGCCCCCATaGGTAGCTGTGGTGGTCCCA +
Preference number: 5 (lower is better)
Translates to: EAVDWRAVGFWQNWSLCLFEVPP*VAVVVP
Trigger: TGGGACCACCACAGCTACCAATGGGGGCACTTCGAA...CAAGCACAGACTCCAGTTCTGCCAAAAGCCAACAGCCCTCCAGTCCACTGCCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CAA 90 bp GGGCTGTTGGCTTTTGGCAGAACTGGAGTCTGTGCTTGTCTGGGGCCACCCTCTCTGGGCACATCCATTTaGTTGCGGAGGAACTTTGCC +
Preference number: 5 (lower is better)
Translates to: GLLAFGRTGVCACLGPPSLGTSI*LRRNFA
Trigger: GGCAAAGTTCCTCCGCAACAAAATGGATGTGCCCAG...AGAGGGTGGCCCCAGACAAGCACAGACTCCAGTTCTGCCAAAAGCCAACAGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CAA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAATCGCCTCGGTCCTCGTaGGAGCCGTTGGGGACCTCT +
Preference number: 5 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKSPRSS*EPLGTS
Trigger: AGAGGTCCCCAACGGCTCCAACGAGGACCGAGGCGA...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CAA 90 bp AAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAATCGCCTCGGTCCTCGTaGGAGCCGTTGGGGACCTCT +
Preference number: 5 (lower is better)
Translates to: KPTSHSENGRNQGKSKVESPRSS*EPLGTS
Trigger: AGAGGTCCCCAACGGCTCCAACGAGGACCGAGGCGA...TTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CAA 90 bp TTTGGCAGAACTGGAGTCTGTGCTTGTCTGGGGCCACCCTCTACTCTAGGCCCCATCTCCACCTTGTACTaGCTGGGCACATCCATTTTG +
Preference number: 5 (lower is better)
Translates to: FGRTGVCACLGPPSTLGPISTLY*LGTSIL
Trigger: CAAAATGGATGTGCCCAGCAAGTACAAGGTGGAGAT...GGGGCCTAGAGTAGAGGGTGGCCCCAGACAAGCACAGACTCCAGTTCTGCCAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CAA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAAGGCTGGACACGGTACTaGAGGGGGAGAGGCCCATTC +
Preference number: 5 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKGWTRY*RGRGPF
Trigger: GAATGGGCCTCTCCCCCTCAAGTACCGTGTCCAGCC...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CAA 90 bp TTTATAAAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGGCAGGGTGAGCCGCTaGCAGGCTGGCTGGACACGG +
Preference number: 5 (lower is better)
Translates to: FIKPTSHSENGRNQGKSKGRVSR*QAGWTR
Trigger: CCGTGTCCAGCCAGCCTGCAAGCGGCTCACCCTGCC...TTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTTTATAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CAA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAAGATGCCCCGCTGGTGTaGGTGCCTTCTGAGGGGGTT +
Preference number: 5 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKDAPLV*VPSEGV
Trigger: AACCCCCTCAGAAGGCACCAACACCAGCGGGGCATC...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CAA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAAGCAGGGCTGGGAGCCTaGTCGCTGACTGACTCACAC +
Preference number: 5 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKAGLGA*SLTDSH
Trigger: GTGTGAGTCAGTCAGCGACAAGGCTCCCAGCCCTGC...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CAA 90 bp AAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAGCAGGGCTGGGAGCCTaGTCGCTGACTGACTCACAC +
Preference number: 5 (lower is better)
Translates to: KPTSHSENGRNQGKSKVEAGLGA*SLTDSH
Trigger: GTGTGAGTCAGTCAGCGACAAGGCTCCCAGCCCTGC...TTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CAA 90 bp ACACAGACTGCATTTGTGAAAGGCACTGACTGTCTCAGCAACTCTGAACATTCATCGCCTCGGTCCTCGTaGGAGCCGTTGGGGACCTCT +
Preference number: 5 (lower is better)
Translates to: TQTAFVKGTDCLSNSEHSSPRSS*EPLGTS
Trigger: AGAGGTCCCCAACGGCTCCAACGAGGACCGAGGCGA...TGAATGTTCAGAGTTGCTGAGACAGTCAGTGCCTTTCACAAATGCAGTCTGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CAA 90 bp AAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAGGTGGAGGATGGCGTTaGCAGGCAGTTCGAAGTGCC +
Preference number: 5 (lower is better)
Translates to: KPTSHSENGRNQGKSKVEGGGWR*QAVRSA
Trigger: GGCACTTCGAACTGCCTGCAAACGCCATCCTCCACC...TTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CAA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAAGGTGGAGGATGGCGTTaGCAGGCAGTTCGAAGTGCC +
Preference number: 5 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKGGGWR*QAVRSA
Trigger: GGCACTTCGAACTGCCTGCAAACGCCATCCTCCACC...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CAA 90 bp TTTATAAAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAATCGCCTCGGTCCTCGTaGGAGCCGTTGGGGACCTCT +
Preference number: 5 (lower is better)
Translates to: FIKPTSHSENGRNQGKSKSPRSS*EPLGTS
Trigger: AGAGGTCCCCAACGGCTCCAACGAGGACCGAGGCGA...TTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTTTATAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CAA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAATTCGAAGTGCCCCCATaGGTAGCTGTGGTGGTCCCA +
Preference number: 5 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKFEVPP*VAVVVP
Trigger: TGGGACCACCACAGCTACCAATGGGGGCACTTCGAA...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CAA 90 bp AAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAATTCGAAGTGCCCCCATaGGTAGCTGTGGTGGTCCCA +
Preference number: 5 (lower is better)
Translates to: KPTSHSENGRNQGKSKVEFEVPP*VAVVVP
Trigger: TGGGACCACCACAGCTACCAATGGGGGCACTTCGAA...TTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CAA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAACCATTAACAGTCATCTaGCGCCCCCTGCTGGTGGAG +
Preference number: 5 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKPLTVI*RPLLVE
Trigger: CTCCACCAGCAGGGGGCGCAAGATGACTGTTAATGG...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CAA 90 bp TTGGCTTTTGGCAGAACTGGAGTCTGTGCTTGTCTGGGGCCACCCTCTACTCTAATCTCCACCTTGTACTaGCTGGGCACATCCATTTTG +
Preference number: 5 (lower is better)
Translates to: LAFGRTGVCACLGPPSTLISTLY*LGTSIL
Trigger: CAAAATGGATGTGCCCAGCAAGTACAAGGTGGAGAT...TAGAGTAGAGGGTGGCCCCAGACAAGCACAGACTCCAGTTCTGCCAAAAGCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CAA 90 bp TTTATAAAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGGCTGGACACGGTACTaGAGGGGGAGAGGCCCATTC +
Preference number: 5 (lower is better)
Translates to: FIKPTSHSENGRNQGKSKGWTRY*RGRGPF
Trigger: GAATGGGCCTCTCCCCCTCAAGTACCGTGTCCAGCC...TTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTTTATAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CAA 90 bp TTTATAAAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGATGCCCCGCTGGTGTaGGTGCCTTCTGAGGGGGTT +
Preference number: 5 (lower is better)
Translates to: FIKPTSHSENGRNQGKSKDAPLV*VPSEGV
Trigger: AACCCCCTCAGAAGGCACCAACACCAGCGGGGCATC...TTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTTTATAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CAA 90 bp TTTATAAAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGCAGGGCTGGGAGCCTaGTCGCTGACTGACTCACAC +
Preference number: 5 (lower is better)
Translates to: FIKPTSHSENGRNQGKSKAGLGA*SLTDSH
Trigger: GTGTGAGTCAGTCAGCGACAAGGCTCCCAGCCCTGC...TTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTTTATAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS GCA 90 bp ATTCCTTCAGGGGCTCATCTTCATAGAGGATCTCCACCTTGTACTTaGTGGGCACATCCATTTTGTTGCGGAGGAACTTTGCCAGGTGCA +
Preference number: 5 (lower is better)
Translates to: IPSGAHLHRGSPPCT*WAHPFCCGGTLPGA
Trigger: TGCACCTGGCAAAGTTCCTCCGCAACAAAATGGATGTGCCCAGCAAGTACAAGGTGGAGATCCTCTATGAAGATGAGCCCCTGAAGGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CAA 90 bp AAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAGGCACATCCATTTTGTaGCGGAGGAACTTTGCCAGG +
Preference number: 5 (lower is better)
Translates to: KPTSHSENGRNQGKSKVEGTSIL*RRNFAR
Trigger: CCTGGCAAAGTTCCTCCGCAACAAAATGGATGTGCC...TTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CAA 90 bp AAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAACTGGGCACATCCATTTaGTTGCGGAGGAACTTTGCC +
Preference number: 5 (lower is better)
Translates to: KPTSHSENGRNQGKSKVELGTSI*LRRNFA
Trigger: GGCAAAGTTCCTCCGCAACAAAATGGATGTGCCCAG...TTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CAA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAACTGGGCACATCCATTTaGTTGCGGAGGAACTTTGCC +
Preference number: 5 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKLGTSI*LRRNFA
Trigger: GGCAAAGTTCCTCCGCAACAAAATGGATGTGCCCAG...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CAA 90 bp ACACAGACTGCATTTGTGAAAGGCACTGACTGTCTCAGCAACTCTGAACATTCACCATTAACAGTCATCTaGCGCCCCCTGCTGGTGGAG +
Preference number: 5 (lower is better)
Translates to: TQTAFVKGTDCLSNSEHSPLTVI*RPLLVE
Trigger: CTCCACCAGCAGGGGGCGCAAGATGACTGTTAATGG...TGAATGTTCAGAGTTGCTGAGACAGTCAGTGCCTTTCACAAATGCAGTCTGTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS GCA 90 bp CGTCACACATGGGGCAGTATTTGTTGGTCTCCAAGTAGCGTACGATaGAGGTTTTGCAGAAGGAATGTAAGCATTCCACAATGGTGGTGG +
Preference number: 5 (lower is better)
Translates to: RHTWGSICWSPSSVR*RFCRRNVSIPQWWW
Trigger: CCACCACCATTGTGGAATGCTTACATTCCTTCTGCAAAACCTGCATCGTACGCTACTTGGAGACCAACAAATACTGCCCCATGTGTGACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CAA 90 bp TTTATAAAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAACCATTAACAGTCATCTaGCGCCCCCTGCTGGTGGAG +
Preference number: 5 (lower is better)
Translates to: FIKPTSHSENGRNQGKSKPLTVI*RPLLVE
Trigger: CTCCACCAGCAGGGGGCGCAAGATGACTGTTAATGG...TTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTTTATAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CAA 90 bp AAACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAATCTCCACCTTGTACTaGCTGGGCACATCCATTTTG +
Preference number: 5 (lower is better)
Translates to: KPTSHSENGRNQGKSKVEISTLY*LGTSIL
Trigger: CAAAATGGATGTGCCCAGCAAGTACAAGGTGGAGAT...TTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS-3UTR CAA 90 bp AACCCACCTCCCACTCTGAAAATGGGAGGAACCAGGGAAAGTCAAAAGTGGAAAATCTCCACCTTGTACTaGCTGGGCACATCCATTTTG +
Preference number: 5 (lower is better)
Translates to: NPPPTLKMGGTRESQKWKISTLY*LGTSIL
Trigger: CAAAATGGATGTGCCCAGCAAGTACAAGGTGGAGAT...TTTCCACTTTTGACTTTCCCTGGTTCCTCCCATTTTCAGAGTGGGAGGTGGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS CCA 72 bp GGCACCGTGGGCAGGGTGAGCCGCTTGCAGGCTGGCTaGACACGGTACTTGAGGGGGAGAGGCCCATTCCTT +
Preference number: 6 (lower is better)
Translates to: GTVGRVSRLQAG*TRYLRGRGPFL
Trigger: AAGGAATGGGCCTCTCCCCCTCAAGTACCGTGTCCAGCCAGCCTGCAAGCGGCTCACCCTGCCCACGGTGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS CCA 72 bp GGTTGGCACCGTGGGCAGGGTGAGCCGCTTGCAGGCTaGCTGGACACGGTACTTGAGGGGGAGAGGCCCATT +
Preference number: 6 (lower is better)
Translates to: GWHRGQGEPLAG*LDTVLEGERPI
Trigger: AATGGGCCTCTCCCCCTCAAGTACCGTGTCCAGCCAGCCTGCAAGCGGCTCACCCTGCCCACGGTGCCAACC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS CAA 72 bp TCTGAGGGGGTTGGCACCGTGGGCAGGGTGAGCCGCTaGCAGGCTGGCTGGACACGGTACTTGAGGGGGAGA +
Preference number: 6 (lower is better)
Translates to: SEGVGTVGRVSR*QAGWTRYLRGR
Trigger: TCTCCCCCTCAAGTACCGTGTCCAGCCAGCCTGCAAGCGGCTCACCCTGCCCACGGTGCCAACCCCCTCAGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS CCA 72 bp CCTTCTCCTGTTCCAGGACCTCGCCTCGGTCCTCGTTaGAGCCGTTGGGGACCTCTGTCAGGGGGTATGCTG +
Preference number: 6 (lower is better)
Translates to: PSPVPGPRLGPR*SRWGPLSGGML
Trigger: CAGCATACCCCCTGACAGAGGTCCCCAACGGCTCCAACGAGGACCGAGGCGAGGTCCTGGAACAGGAGAAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS CAA 72 bp CCCTTCTCCTGTTCCAGGACCTCGCCTCGGTCCTCGTaGGAGCCGTTGGGGACCTCTGTCAGGGGGTATGCT +
Preference number: 6 (lower is better)
Translates to: PFSCSRTSPRSS*EPLGTSVRGYA
Trigger: AGCATACCCCCTGACAGAGGTCCCCAACGGCTCCAACGAGGACCGAGGCGAGGTCCTGGAACAGGAGAAGGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS CAA 90 bp CTGCTGGTGGAGGATGGCGTTTGCAGGCAGTTCGAAGTGCCCCCATaGGTAGCTGTGGTGGTCCCAGCGGCAGTTGAAGGTGGAGTGGGG +
Preference number: 6 (lower is better)
Translates to: LLVEDGVCRQFEVPP*VAVVVPAAVEGGVG
Trigger: CCCCACTCCACCTTCAACTGCCGCTGGGACCACCACAGCTACCAATGGGGGCACTTCGAACTGCCTGCAAACGCCATCCTCCACCAGCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS GCA 72 bp GCGGAGGAACTTTGCCAGGTGCATGACGGTCATGGCTaGTGGGCACCGCAGGAATCGCACTCCTGTCTTCTC +
Preference number: 6 (lower is better)
Translates to: AEELCQVHDGHG*WAPQESHSCLL
Trigger: GAGAAGACAGGAGTGCGATTCCTGCGGTGCCCAGCAGCCATGACCGTCATGCACCTGGCAAAGTTCCTCCGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS CAA 90 bp GCCATTAACAGTCATCTTGCGCCCCCTGCTGGTGGAGGATGGCGTTaGCAGGCAGTTCGAAGTGCCCCCATTGGTAGCTGTGGTGGTCCC +
Preference number: 6 (lower is better)
Translates to: AINSHLAPPAGGGWR*QAVRSAPIGSCGGP
Trigger: GGGACCACCACAGCTACCAATGGGGGCACTTCGAACTGCCTGCAAACGCCATCCTCCACCAGCAGGGGGCGCAAGATGACTGTTAATGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS CAA 72 bp GAGGATGGCGTTTGCAGGCAGTTCGAAGTGCCCCCATaGGTAGCTGTGGTGGTCCCAGCGGCAGTTGAAGGT +
Preference number: 6 (lower is better)
Translates to: EDGVCRQFEVPP*VAVVVPAAVEG
Trigger: ACCTTCAACTGCCGCTGGGACCACCACAGCTACCAATGGGGGCACTTCGAACTGCCTGCAAACGCCATCCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS CAA 72 bp AGTCATCTTGCGCCCCCTGCTGGTGGAGGATGGCGTTaGCAGGCAGTTCGAAGTGCCCCCATTGGTAGCTGT +
Preference number: 6 (lower is better)
Translates to: SHLAPPAGGGWR*QAVRSAPIGSC
Trigger: ACAGCTACCAATGGGGGCACTTCGAACTGCCTGCAAACGCCATCCTCCACCAGCAGGGGGCGCAAGATGACT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS CCA 72 bp GAGGAACTTTGCCAGGTGCATGACGGTCATGGCTGCTaGGCACCGCAGGAATCGCACTCCTGTCTTCTCCTT +
Preference number: 6 (lower is better)
Translates to: EELCQVHDGHGC*APQESHSCLLL
Trigger: AAGGAGAAGACAGGAGTGCGATTCCTGCGGTGCCCAGCAGCCATGACCGTCATGCACCTGGCAAAGTTCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS GCA 72 bp CTCGTTGGAGCCGTTGGGGACCTCTGTCAGGGGGTATaGTGCATAGAAGTCCCGTCGCCGTTTCATTTCATC +
Preference number: 6 (lower is better)
Translates to: LVGAVGDLCQGV*CIEVPSPFHFI
Trigger: GATGAAATGAAACGGCGACGGGACTTCTATGCAGCATACCCCCTGACAGAGGTCCCCAACGGCTCCAACGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS CCA 72 bp ATTAACAGTCATCTTGCGCCCCCTGCTGGTGGAGGATaGCGTTTGCAGGCAGTTCGAAGTGCCCCCATTGGT +
Preference number: 6 (lower is better)
Translates to: INSHLAPPAGGG*RLQAVRSAPIG
Trigger: ACCAATGGGGGCACTTCGAACTGCCTGCAAACGCCATCCTCCACCAGCAGGGGGCGCAAGATGACTGTTAAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000103149.9
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS GCA 72 bp GTTGGAGCCGTTGGGGACCTCTGTCAGGGGGTATGCTaGATAGAAGTCCCGTCGCCGTTTCATTTCATCTTT +
Preference number: 6 (lower is better)
Translates to: VGAVGDLCQGVC*IEVPSPFHFIF
Trigger: AAAGATGAAATGAAACGGCGACGGGACTTCTATGCAGCATACCCCCTGACAGAGGTCCCCAACGGCTCCAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS CAA 72 bp AGGATCTCCACCTTGTACTTGCTGGGCACATCCATTTaGTTGCGGAGGAACTTTGCCAGGTGCATGACGGTC +
Preference number: 6 (lower is better)
Translates to: RISTLYLLGTSI*LRRNFARCMTV
Trigger: GACCGTCATGCACCTGGCAAAGTTCCTCCGCAACAAAATGGATGTGCCCAGCAAGTACAAGGTGGAGATCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS CCA 72 bp GCAGTGGTCGAGTTTTATGGACCTGGACGTCACACATaGGGCAGTATTTGTTGGTCTCCAAGTAGCGTACGA +
Preference number: 6 (lower is better)
Translates to: AVVEFYGPGRHT*GSICWSPSSVR
Trigger: TCGTACGCTACTTGGAGACCAACAAATACTGCCCCATGTGTGACGTCCAGGTCCATAAAACTCGACCACTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS CCA 72 bp GATCTGATGCTCAGCAGTGGTCGAGTTTTATGGACCTaGACGTCACACATGGGGCAGTATTTGTTGGTCTCC +
Preference number: 6 (lower is better)
Translates to: DLMLSSGRVLWT*TSHMGQYLLVS
Trigger: GGAGACCAACAAATACTGCCCCATGTGTGACGTCCAGGTCCATAAAACTCGACCACTGCTGAGCATCAGATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS CAA 72 bp ATCTCCACCTTGTACTTGCTGGGCACATCCATTTTGTaGCGGAGGAACTTTGCCAGGTGCATGACGGTCATG +
Preference number: 6 (lower is better)
Translates to: ISTLYLLGTSIL*RRNFARCMTVM
Trigger: CATGACCGTCATGCACCTGGCAAAGTTCCTCCGCAACAAAATGGATGTGCCCAGCAAGTACAAGGTGGAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS GCA 72 bp GGGGCTCATCTTCATAGAGGATCTCCACCTTGTACTTaGTGGGCACATCCATTTTGTTGCGGAGGAACTTTG +
Preference number: 6 (lower is better)
Translates to: GAHLHRGSPPCT*WAHPFCCGGTL
Trigger: CAAAGTTCCTCCGCAACAAAATGGATGTGCCCAGCAAGTACAAGGTGGAGATCCTCTATGAAGATGAGCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS CCA 72 bp TATGGACCTGGACGTCACACATGGGGCAGTATTTGTTaGTCTCCAAGTAGCGTACGATGCAGGTTTTGCAGA +
Preference number: 6 (lower is better)
Translates to: YGPGRHTWGSIC*SPSSVRCRFCR
Trigger: TCTGCAAAACCTGCATCGTACGCTACTTGGAGACCAACAAATACTGCCCCATGTGTGACGTCCAGGTCCATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS CCA 72 bp TTGTCTGATCTGATGCTCAGCAGTGGTCGAGTTTTATaGACCTGGACGTCACACATGGGGCAGTATTTGTTG +
Preference number: 6 (lower is better)
Translates to: LSDLMLSSGRVL*TWTSHMGQYLL
Trigger: CAACAAATACTGCCCCATGTGTGACGTCCAGGTCCATAAAACTCGACCACTGCTGAGCATCAGATCAGACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS CCA 72 bp GCTCATCTTCATAGAGGATCTCCACCTTGTACTTGCTaGGCACATCCATTTTGTTGCGGAGGAACTTTGCCA +
Preference number: 6 (lower is better)
Translates to: AHLHRGSPPCTC*AHPFCCGGTLP
Trigger: TGGCAAAGTTCCTCCGCAACAAAATGGATGTGCCCAGCAAGTACAAGGTGGAGATCCTCTATGAAGATGAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS GCA 72 bp ATTTGTTGGTCTCCAAGTAGCGTACGATGCAGGTTTTaGAGAAGGAATGTAAGCATTCCACAATGGTGGTGG +
Preference number: 6 (lower is better)
Translates to: ICWSPSSVRCRF*RRNVSIPQWWW
Trigger: CCACCACCATTGTGGAATGCTTACATTCCTTCTGCAAAACCTGCATCGTACGCTACTTGGAGACCAACAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8
CDS GCA 72 bp TGGGGCAGTATTTGTTGGTCTCCAAGTAGCGTACGATaGAGGTTTTGCAGAAGGAATGTAAGCATTCCACAA +
Preference number: 6 (lower is better)
Translates to: WGSICWSPSSVR*RFCRRNVSIPQ
Trigger: TTGTGGAATGCTTACATTCCTTCTGCAAAACCTGCATCGTACGCTACTTGGAGACCAACAAATACTGCCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000018681.14
ENSMUST00000103148.8
ENSMUST00000169807.8
ENSMUST00000179765.8