Pregenerated sensors for PCGF1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000069678Ensembl transcript IDs: ENSMUST00000092614.9, ENSMUST00000165164.9, ENSMUST00000176027.8, ENSMUST00000176089.2, ENSMUST00000176100.2, ENSMUST00000177177.8
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | TGTATTGGAGAAGCAAAGGAGATGGCTTGCCGAACCAGCGGGACAGCCATAGCTAAAAGGAGCTGTACATaGTGTGGATTTAGCATTAGT | + |
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Preference number: 2 (lower is better) Translates to: CIGEAKEMACRTSGTAIAKRSCT*CGFSIS Trigger: ACTAATGCTAAATCCACAGCATGTACAGCTCCTTTT...AGCTATGGCTGTCCCGCTGGTTCGGCAAGCCATCTCCTTTGCTTCTCCAATACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176027.8 |
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| CDS-3UTR CCA 90 bp | CACTGTATTGGAGAAGCAAAGGAGATGGCTTGCCGAACCAGCGGGACAGCCATAAAGGTTGCTCAGGGCTaGCTCTTCACCACTGGGCTG | + |
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Preference number: 4 (lower is better) Translates to: HCIGEAKEMACRTSGTAIKVAQG*LFTTGL Trigger: CAGCCCAGTGGTGAAGAGCCAGCCCTGAGCAACCTT...TATGGCTGTCCCGCTGGTTCGGCAAGCCATCTCCTTTGCTTCTCCAATACAGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176027.8 |
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| CDS-3UTR CCA 90 bp | CACTGTATTGGAGAAGCAAAGGAGATGGCTTGCCGAACCAGCGGGACAGCCATACTGGCTCTTCACCACTaGGCTGGGAGACTCTGTCTA | + |
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Preference number: 4 (lower is better) Translates to: HCIGEAKEMACRTSGTAILALHH*AGRLCL Trigger: TAGACAGAGTCTCCCAGCCCAGTGGTGAAGAGCCAG...TATGGCTGTCCCGCTGGTTCGGCAAGCCATCTCCTTTGCTTCTCCAATACAGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176027.8 |
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| CDS-3UTR GCA 90 bp | CACTGTATTGGAGAAGCAAAGGAGATGGCTTGCCGAACCAGCGGGACAGCCATAAGATTGAGCAACGGCTaGGTCTCGTGGATCTTGATG | + |
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Preference number: 4 (lower is better) Translates to: HCIGEAKEMACRTSGTAIRLSNG*VSWILM Trigger: CATCAAGATCCACGAGACGCAGCCGTTGCTCAATCT...TATGGCTGTCCCGCTGGTTCGGCAAGCCATCTCCTTTGCTTCTCCAATACAGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176027.8 |
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| CDS-3UTR GCA 90 bp | TGTATTGGAGAAGCAAAGGAGATGGCTTGCCGAACCAGCGGGACAGCCATAGCTTTTTATTCTTGTCTTTaGCAGAACTCAGCCGCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: CIGEAKEMACRTSGTAIAFYSCL*QNSAAP Trigger: TGGAGCGGCTGAGTTCTGGCAAAGACAAGAATAAAA...AGCTATGGCTGTCCCGCTGGTTCGGCAAGCCATCTCCTTTGCTTCTCCAATACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000176027.8 |
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| CDS TCA 90 bp | AGTAGCCCGCGCACAGGCAGCAAACGATGTGTTCATTCAGGTCTTTaGTCTTCACCCGGACCTCCTCCTCGTTCCGTAGTGGGTCCATCT | + |
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Preference number: 5 (lower is better) Translates to: SSPRTGSKRCVHSGL*SSPGPPPRSVVGPS Trigger: AGATGGACCCACTACGGAACGAGGAGGAGGTCCGGGTGAAGATCAAAGACCTGAATGAACACATCGTTTGCTGCCTGTGCGCGGGCTACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000092614.9 ENSMUST00000165164.9 ENSMUST00000176100.2 |
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| CDS-3UTR CAA 90 bp | CACTGTATTGGAGAAGCAAAGGAGATGGCTTGCCGAACCAGCGGGACAGCCATACGATCCAGTTTGAGATaGAGCAACGGCTGCGTCTCG | + |
|
Preference number: 5 (lower is better) Translates to: HCIGEAKEMACRTSGTAIRSSLR*SNGCVS Trigger: CGAGACGCAGCCGTTGCTCAATCTCAAACTGGATCG...TATGGCTGTCCCGCTGGTTCGGCAAGCCATCTCCTTTGCTTCTCCAATACAGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176027.8 |
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| CDS CCA 90 bp | TGCATGACCCGATCCAGTTTGAGATTGAGCAACGGCTGCGTCTCGTaGATCTTGATGTTGCACATGGGGCAGTACTTGCTGGTTTGCAGG | + |
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Preference number: 5 (lower is better) Translates to: CMTRSSLRLSNGCVS*ILMLHMGQYLLVCR Trigger: CCTGCAAACCAGCAAGTACTGCCCCATGTGCAACATCAAGATCCACGAGACGCAGCCGTTGCTCAATCTCAAACTGGATCGGGTCATGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092614.9 ENSMUST00000165164.9 |
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| CDS GCA 90 bp | ACTATGTCCTGCATGACCCGATCCAGTTTGAGATTGAGCAACGGCTaGGTCTCGTGGATCTTGATGTTGCACATGGGGCAGTACTTGCTG | + |
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Preference number: 5 (lower is better) Translates to: TMSCMTRSSLRLSNG*VSWILMLHMGQYLL Trigger: CAGCAAGTACTGCCCCATGTGCAACATCAAGATCCACGAGACGCAGCCGTTGCTCAATCTCAAACTGGATCGGGTCATGCAGGACATAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092614.9 ENSMUST00000165164.9 |
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| CDS GCA 90 bp | GCCAGAATGTCTTGCAAGCCTGGCACTAGCTTATACACTATGTCCTaGATGACCCGATCCAGTTTGAGATTGAGCAACGGCTGCGTCTCG | + |
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Preference number: 5 (lower is better) Translates to: ARMSCKPGTSLYTMS*MTRSSLRLSNGCVS Trigger: CGAGACGCAGCCGTTGCTCAATCTCAAACTGGATCGGGTCATGCAGGACATAGTGTATAAGCTAGTGCCAGGCTTGCAAGACATTCTGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176089.2 |
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| CDS GCA 90 bp | TCTTCACTGTCTTGCAAGCCTGGCACTAGCTTATACACTATGTCCTaGATGACCCGATCCAGTTTGAGATTGAGCAACGGCTGCGTCTCG | + |
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Preference number: 5 (lower is better) Translates to: SSLSCKPGTSLYTMS*MTRSSLRLSNGCVS Trigger: CGAGACGCAGCCGTTGCTCAATCTCAAACTGGATCGGGTCATGCAGGACATAGTGTATAAGCTAGTGCCAGGCTTGCAAGACAGTGAAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000092614.9 ENSMUST00000165164.9 ENSMUST00000176027.8 ENSMUST00000177177.8 |
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| CDS CAA 72 bp | ACCCGGACCTCCTCCTCGTTCCGTAGTGGGTCCATCTaGTACACTGACTGGAGCTGGTTCCGAAGCCTCATC | + |
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Preference number: 6 (lower is better) Translates to: TRTSSSFRSGSI*YTDWSWFRSLI Trigger: GATGAGGCTTCGGAACCAGCTCCAGTCAGTGTACAAGATGGACCCACTACGGAACGAGGAGGAGGTCCGGGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165164.9 |
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| CDS CAA 90 bp | TTGATCTTCACCCGGACCTCCTCCTCGTTCCGTAGTGGGTCCATCTaGTACACTGACTGGAGCTGGTTCCGAAGCCTCATCGCGATCGCA | + |
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Preference number: 6 (lower is better) Translates to: LIFTRTSSSFRSGSI*YTDWSWFRSLIAIA Trigger: TGCGATCGCGATGAGGCTTCGGAACCAGCTCCAGTCAGTGTACAAGATGGACCCACTACGGAACGAGGAGGAGGTCCGGGTGAAGATCAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165164.9 |
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| CDS CCA 72 bp | TTCCGTAGTGGGTCCATCTTGTACACTGACTGGAGCTaGTTCCGAAGCCTCATCGCGATCGCAATCTGGCCC | + |
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Preference number: 6 (lower is better) Translates to: FRSGSILYTDWS*FRSLIAIAIWP Trigger: GGGCCAGATTGCGATCGCGATGAGGCTTCGGAACCAGCTCCAGTCAGTGTACAAGATGGACCCACTACGGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165164.9 |
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| CDS CCA 72 bp | TCCTCGTTCCGTAGTGGGTCCATCTTGTACACTGACTaGAGCTGGTTCCGAAGCCTCATCGCGATCGCAATC | + |
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Preference number: 6 (lower is better) Translates to: SSFRSGSILYTD*SWFRSLIAIAI Trigger: GATTGCGATCGCGATGAGGCTTCGGAACCAGCTCCAGTCAGTGTACAAGATGGACCCACTACGGAACGAGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165164.9 |
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| CDS TCA 72 bp | CGCACAGGCAGCAAACGATGTGTTCATTCAGGTCTTTaGTCTTCACCCGGACCTCCTCCTCGTTCCGTAGTG | + |
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Preference number: 6 (lower is better) Translates to: RTGSKRCVHSGL*SSPGPPPRSVV Trigger: CACTACGGAACGAGGAGGAGGTCCGGGTGAAGATCAAAGACCTGAATGAACACATCGTTTGCTGCCTGTGCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000092614.9 ENSMUST00000165164.9 ENSMUST00000176100.2 |
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| CDS CCA 72 bp | CGATCCAGTTTGAGATTGAGCAACGGCTGCGTCTCGTaGATCTTGATGTTGCACATGGGGCAGTACTTGCTG | + |
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Preference number: 6 (lower is better) Translates to: RSSLRLSNGCVS*ILMLHMGQYLL Trigger: CAGCAAGTACTGCCCCATGTGCAACATCAAGATCCACGAGACGCAGCCGTTGCTCAATCTCAAACTGGATCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092614.9 ENSMUST00000165164.9 |
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| CDS GCA 72 bp | TCTTGCAAGCCTGGCACTAGCTTATACACTATGTCCTaGATGACCCGATCCAGTTTGAGATTGAGCAACGGC | + |
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Preference number: 6 (lower is better) Translates to: SCKPGTSLYTMS*MTRSSLRLSNG Trigger: GCCGTTGCTCAATCTCAAACTGGATCGGGTCATGCAGGACATAGTGTATAAGCTAGTGCCAGGCTTGCAAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000092614.9 ENSMUST00000165164.9 ENSMUST00000176027.8 ENSMUST00000176089.2 ENSMUST00000177177.8 |
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| CDS CAA 72 bp | TACACTATGTCCTGCATGACCCGATCCAGTTTGAGATaGAGCAACGGCTGCGTCTCGTGGATCTTGATGTTG | + |
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Preference number: 6 (lower is better) Translates to: YTMSCMTRSSLR*SNGCVSWILML Trigger: CAACATCAAGATCCACGAGACGCAGCCGTTGCTCAATCTCAAACTGGATCGGGTCATGCAGGACATAGTGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000092614.9 ENSMUST00000165164.9 ENSMUST00000176027.8 ENSMUST00000176089.2 ENSMUST00000177177.8 |
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| CDS CAA 72 bp | AGCTTATACACTATGTCCTGCATGACCCGATCCAGTTaGAGATTGAGCAACGGCTGCGTCTCGTGGATCTTG | + |
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Preference number: 6 (lower is better) Translates to: SLYTMSCMTRSS*RLSNGCVSWIL Trigger: CAAGATCCACGAGACGCAGCCGTTGCTCAATCTCAAACTGGATCGGGTCATGCAGGACATAGTGTATAAGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000092614.9 ENSMUST00000165164.9 ENSMUST00000176027.8 ENSMUST00000176089.2 ENSMUST00000177177.8 |
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