Pregenerated sensors for PCED1B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044250Ensembl transcript IDs: ENSMUST00000059433.8, ENSMUST00000226495.2, ENSMUST00000228521.2
Found 74 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
---|---|---|
CDS-3UTR CCA 90 bp | AACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTTAGCAAGGTCACTGGGCATCTGCTGGGGCTaGGGCAGGGGACATCCTAGT | + |
Preference number: 4 (lower is better) Translates to: NKEKSKTGLAGVGLARSLGICWG*GRGHPS Trigger: ACTAGGATGTCCCCTGCCCCAGCCCCAGCAGATGCC...CAGTGACCTTGCTAACCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CCA 90 bp | AAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTAGGGGGAAGGGCATCTGCTGGGGCTaGGGCAGGGGACATCCTAGT | + |
Preference number: 4 (lower is better) Translates to: KNSKGEVVRMLAWSLRGKGICWG*GRGHPS Trigger: ACTAGGATGTCCCCTGCCCCAGCCCCAGCAGATGCC...CTTCCCCCTAAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CCA 90 bp | AAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTTAGCAAGGTCACTCTAGCAGGCACGACTTaGGCAGCACCTGGTCCATGC | + |
Preference number: 4 (lower is better) Translates to: KQREVQDRTSWGWVSKVTLAGTT*AAPGPC Trigger: GCATGGACCAGGTGCTGCCCAAGTCGTGCCTGCTAG...AGTGACCTTGCTAACCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR GCA 90 bp | AACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTTAGCAAGGTCACTGTTGTACACCGCCCTATaGACAGAGTCCCCAAGGACG | + |
Preference number: 4 (lower is better) Translates to: NKEKSKTGLAGVGLARSLLYTAL*TESPRT Trigger: CGTCCTTGGGGACTCTGTGCATAGGGCGGTGTACAA...CAGTGACCTTGCTAACCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR GCA 90 bp | AAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTTAGCAAGGTCACTGCAGGTAGGAGAGCTTaGGGTGCGCATGCTCATTCC | + |
Preference number: 4 (lower is better) Translates to: KQREVQDRTSWGWVSKVTAGRRA*GAHAHS Trigger: GGAATGAGCATGCGCACCGCAAGCTCTCCTACCTGC...AGTGACCTTGCTAACCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CCA 90 bp | GGCAACAAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTAGGGAGATCCGGGGGTACTaGCCCTTACACTTCTGTGGG | + |
Preference number: 4 (lower is better) Translates to: GNKNSKGEVVRMLAWSLREIRGY*PLHFCG Trigger: CCCACAGAAGTGTAAGGGCCAGTACCCCCGGATCTC...CCTAAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTTGTTGCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CCA 90 bp | AAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTTAGCAAGGTCACTGAGATCCGGGGGTACTaGCCCTTACACTTCTGTGGG | + |
Preference number: 4 (lower is better) Translates to: KQREVQDRTSWGWVSKVTEIRGY*PLHFCG Trigger: CCCACAGAAGTGTAAGGGCCAGTACCCCCGGATCTC...AGTGACCTTGCTAACCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CCA 90 bp | AACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTTAGCAAGGTCACTGCTTTCCTTTTCAGGGTaGCTACCGAGATCCGGGGGT | + |
Preference number: 4 (lower is better) Translates to: NKEKSKTGLAGVGLARSLLSFSG*LPRSGG Trigger: ACCCCCGGATCTCGGTAGCCACCCTGAAAAGGAAAG...CAGTGACCTTGCTAACCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CCA 90 bp | GGCAACAAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTAGGAGGATAGAGTGGGAATaGGGGCATCTGCTGGGGCTG | + |
Preference number: 4 (lower is better) Translates to: GNKNSKGEVVRMLAWSLRRIEWE*GHLLGL Trigger: CAGCCCCAGCAGATGCCCCCATTCCCACTCTATCCT...CCTAAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTTGTTGCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR GCA 90 bp | GGCAACAAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTAGGTTGTACACCGCCCTATaGACAGAGTCCCCAAGGACG | + |
Preference number: 4 (lower is better) Translates to: GNKNSKGEVVRMLAWSLRLYTAL*TESPRT Trigger: CGTCCTTGGGGACTCTGTGCATAGGGCGGTGTACAA...CCTAAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTTGTTGCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR GCA 90 bp | TTTCTAACAGCAATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGCAACTCCACACCCCATaGATCGGCCATGTGGGCCAG | + |
Preference number: 4 (lower is better) Translates to: FLTAINKEKSKTGLAGVGQLHTP*IGHVGQ Trigger: CTGGCCCACATGGCCGATGCATGGGGTGTGGAGTTG...CCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATTGCTGTTAGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR GCA 90 bp | AAAGGCAACAAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTCAACTCCACACCCCATaGATCGGCCATGTGGGCCAG | + |
Preference number: 4 (lower is better) Translates to: KGNKNSKGEVVRMLAWSLQLHTP*IGHVGQ Trigger: CTGGCCCACATGGCCGATGCATGGGGTGTGGAGTTG...AAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTTGTTGCCTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR GCA 90 bp | AAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTAGGGGGAAGAGGTTGTCTTGGGGCTaGCTTTCCTCTACCTGGCCT | + |
Preference number: 4 (lower is better) Translates to: KNSKGEVVRMLAWSLRGKRLSWG*LSSTWP Trigger: AGGCCAGGTAGAGGAAAGGCAGCCCCAAGACAACCT...CTTCCCCCTAAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CCA 90 bp | GGGGCCAGTCTGCTCTTCCCTGCCTCAGTTTCTAACAGCAATAAACAAAGAGAACTTTCCTTTTCAGGGTaGCTACCGAGATCCGGGGGT | + |
Preference number: 4 (lower is better) Translates to: GASLLFPASVSNSNKQRELSFSG*LPRSGG Trigger: ACCCCCGGATCTCGGTAGCCACCCTGAAAAGGAAAG...TTCTCTTTGTTTATTGCTGTTAGAAACTGAGGCAGGGAAGAGCAGACTGGCCCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CCA 90 bp | GGGGCCAGTCTGCTCTTCCCTGCCTCAGTTTCTAACAGCAATAAACAAAGAGAATGCCTTTCCTCTACCTaGCCTGAACTTTCCCACGCC | + |
Preference number: 4 (lower is better) Translates to: GASLLFPASVSNSNKQRECLSST*PELSHA Trigger: GGCGTGGGAAAGTTCAGGCCAGGTAGAGGAAAGGCA...TTCTCTTTGTTTATTGCTGTTAGAAACTGAGGCAGGGAAGAGCAGACTGGCCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CCA 90 bp | AAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTAGGGGGAAGGGTCCTAGGTTGTCTTaGGGCTGCCTTTCCTCTACC | + |
Preference number: 4 (lower is better) Translates to: KNSKGEVVRMLAWSLRGKGPRLS*GCLSST Trigger: GGTAGAGGAAAGGCAGCCCCAAGACAACCTAGGACC...CTTCCCCCTAAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CCA 90 bp | AAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTAGGGGGAAGTCCAGTGTGGGTAGGTaGGGGGCTATCGGAATGGAT | + |
Preference number: 4 (lower is better) Translates to: KNSKGEVVRMLAWSLRGKSSVGR*GAIGMD Trigger: ATCCATTCCGATAGCCCCCCACCTACCCACACTGGA...CTTCCCCCTAAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR TCA 90 bp | GGCAACAAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTAGGTTCCTCTACCTGGCCTaGACTTTCCCACGCCTCAAA | + |
Preference number: 4 (lower is better) Translates to: GNKNSKGEVVRMLAWSLRFLYLA*TFPRLK Trigger: TTTGAGGCGTGGGAAAGTTCAGGCCAGGTAGAGGAA...CCTAAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTTGTTGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR GCA 90 bp | CTAACAGCAATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTTACCATCTCCCTGCAGGTaGTTTCTGGCTTGCCGGAAG | + |
Preference number: 4 (lower is better) Translates to: LTAINKEKSKTGLAGVGLPSPCR*FLACRK Trigger: CTTCCGGCAAGCCAGAAAGCACCTGCAGGGAGATGG...TAACCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATTGCTGTTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR GCA 90 bp | AAAGGCAACAAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTGCAGGTAGGAGAGCTTaGGGTGCGCATGCTCATTCC | + |
Preference number: 4 (lower is better) Translates to: KGNKNSKGEVVRMLAWSLAGRRA*GAHAHS Trigger: GGAATGAGCATGCGCACCGCAAGCTCTCCTACCTGC...AAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTTGTTGCCTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CCA 90 bp | AAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTAGGGGGAAGCCTCCCATCTTCAGCTaGTCCTTCTCAAAGCTCAGC | + |
Preference number: 4 (lower is better) Translates to: KNSKGEVVRMLAWSLRGKPPIFS*SFSKLS Trigger: GCTGAGCTTTGAGAAGGACCAGCTGAAGATGGGAGG...CTTCCCCCTAAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CCA 90 bp | AATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTTAGCAAGGTCAATTCCGCCCATACCTaGAGACGTCCCAGAGGCAAG | + |
Preference number: 4 (lower is better) Translates to: NKQREVQDRTSWGWVSKVNSAHT*RRPRGK Trigger: CTTGCCTCTGGGACGTCTCCAGGTATGGGCGGAATT...GACCTTGCTAACCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CCA 90 bp | CAGTTTCTAACAGCAATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTCTAGCAGGCACGACTTaGGCAGCACCTGGTCCATGC | + |
Preference number: 4 (lower is better) Translates to: QFLTAINKEKSKTGLAGVLAGTT*AAPGPC Trigger: GCATGGACCAGGTGCTGCCCAAGTCGTGCCTGCTAG...AACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATTGCTGTTAGAAACTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CCA 90 bp | GGCAACAAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTAGGCCTGCAGGTGCTTTCTaGCTTGCCGGAAGTGGAAAT | + |
Preference number: 4 (lower is better) Translates to: GNKNSKGEVVRMLAWSLRPAGAF*LAGSGN Trigger: ATTTCCACTTCCGGCAAGCCAGAAAGCACCTGCAGG...CCTAAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTTGTTGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CCA 90 bp | AATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTTAGCAAGGTCGGTCCTAGGTTGTCTTaGGGCTGCCTTTCCTCTACC | + |
Preference number: 4 (lower is better) Translates to: NKQREVQDRTSWGWVSKVGPRLS*GCLSST Trigger: GGTAGAGGAAAGGCAGCCCCAAGACAACCTAGGACC...GACCTTGCTAACCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CCA 90 bp | AATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTTAGCAAGGTCGTTTTGGCGGTCGCCTaGGTCTGTCTCTCCAAGGAT | + |
Preference number: 4 (lower is better) Translates to: NKQREVQDRTSWGWVSKVVLAVA*VCLSKD Trigger: ATCCTTGGAGAGACAGACCCAGGCGACCGCCAAAAC...GACCTTGCTAACCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR GCA 90 bp | AAAGGCAACAAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTAGGTTGTCTTGGGGCTaGCTTTCCTCTACCTGGCCT | + |
Preference number: 4 (lower is better) Translates to: KGNKNSKGEVVRMLAWSLRLSWG*LSSTWP Trigger: AGGCCAGGTAGAGGAAAGGCAGCCCCAAGACAACCT...AAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTTGTTGCCTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CCA 90 bp | CTGCTCTTCCCTGCCTCAGTTTCTAACAGCAATAAACAAAGAGAAGTCCAAGACTGCCTTTCCTCTACCTaGCCTGAACTTTCCCACGCC | + |
Preference number: 4 (lower is better) Translates to: LLFPASVSNSNKQREVQDCLSST*PELSHA Trigger: GGCGTGGGAAAGTTCAGGCCAGGTAGAGGAAAGGCA...GTCTTGGACTTCTCTTTGTTTATTGCTGTTAGAAACTGAGGCAGGGAAGAGCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CCA 90 bp | GGGGCCAGTCTGCTCTTCCCTGCCTCAGTTTCTAACAGCAATAAACAAAGAGAATGGGAGAAGGGGAGGTaGTCTAAAAGGACAATGTGG | + |
Preference number: 4 (lower is better) Translates to: GASLLFPASVSNSNKQREWEKGR*SKRTMW Trigger: CCACATTGTCCTTTTAGACCACCTCCCCTTCTCCCA...TTCTCTTTGTTTATTGCTGTTAGAAACTGAGGCAGGGAAGAGCAGACTGGCCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CCA 90 bp | CAGTTTCTAACAGCAATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTAGGATAGAGTGGGAATaGGGGCATCTGCTGGGGCTG | + |
Preference number: 4 (lower is better) Translates to: QFLTAINKEKSKTGLAGVRIEWE*GHLLGL Trigger: CAGCCCCAGCAGATGCCCCCATTCCCACTCTATCCT...AACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATTGCTGTTAGAAACTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CCA 90 bp | CTAACAGCAATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTTATCCAGTGTGGGTAGGTaGGGGGCTATCGGAATGGAT | + |
Preference number: 4 (lower is better) Translates to: LTAINKEKSKTGLAGVGLSSVGR*GAIGMD Trigger: ATCCATTCCGATAGCCCCCCACCTACCCACACTGGA...TAACCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATTGCTGTTAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CCA 90 bp | AACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTTAGCAAGGTCACTGGAAGTTGGGCACAGGTaGCTGGGGATAAAAGCTAAA | + |
Preference number: 4 (lower is better) Translates to: NKEKSKTGLAGVGLARSLEVGHR*LGIKAK Trigger: TTTAGCTTTTATCCCCAGCCACCTGTGCCCAACTTC...CAGTGACCTTGCTAACCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CCA 90 bp | TCTAACAGCAATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTTGTTTTGGCGGTCGCCTaGGTCTGTCTCTCCAAGGAT | + |
Preference number: 4 (lower is better) Translates to: SNSNKQREVQDRTSWGWVVLAVA*VCLSKD Trigger: ATCCTTGGAGAGACAGACCCAGGCGACCGCCAAAAC...AACCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATTGCTGTTAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR TCA 90 bp | CTGCTCTTCCCTGCCTCAGTTTCTAACAGCAATAAACAAAGAGAAGTCCAAGACTTCCTCTACCTGGCCTaGACTTTCCCACGCCTCAAA | + |
Preference number: 4 (lower is better) Translates to: LLFPASVSNSNKQREVQDFLYLA*TFPRLK Trigger: TTTGAGGCGTGGGAAAGTTCAGGCCAGGTAGAGGAA...GTCTTGGACTTCTCTTTGTTTATTGCTGTTAGAAACTGAGGCAGGGAAGAGCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CCA 90 bp | TTTCTAACAGCAATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGCCTCCCATCTTCAGCTaGTCCTTCTCAAAGCTCAGC | + |
Preference number: 4 (lower is better) Translates to: FLTAINKEKSKTGLAGVGPPIFS*SFSKLS Trigger: GCTGAGCTTTGAGAAGGACCAGCTGAAGATGGGAGG...CCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATTGCTGTTAGAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CCA 90 bp | AAAGGCAACAAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTCCTGCAGGTGCTTTCTaGCTTGCCGGAAGTGGAAAT | + |
Preference number: 4 (lower is better) Translates to: KGNKNSKGEVVRMLAWSLPAGAF*LAGSGN Trigger: ATTTCCACTTCCGGCAAGCCAGAAAGCACCTGCAGG...AAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTTGTTGCCTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CCA 90 bp | TTTCTAACAGCAATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTGGGAGAAGGGGAGGTaGTCTAAAAGGACAATGTGG | + |
Preference number: 4 (lower is better) Translates to: FLTAINKEKSKTGLAGVGWEKGR*SKRTMW Trigger: CCACATTGTCCTTTTAGACCACCTCCCCTTCTCCCA...CCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATTGCTGTTAGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CCA 90 bp | CTGCTCTTCCCTGCCTCAGTTTCTAACAGCAATAAACAAAGAGAAGTCCAAGACAACTTGAGGATAGAGTaGGAATGGGGGCATCTGCTG | + |
Preference number: 4 (lower is better) Translates to: LLFPASVSNSNKQREVQDNLRIE*EWGHLL Trigger: CAGCAGATGCCCCCATTCCCACTCTATCCTCAAGTT...GTCTTGGACTTCTCTTTGTTTATTGCTGTTAGAAACTGAGGCAGGGAAGAGCAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR GCA 90 bp | AAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTAGGGGGAAGGAAATAGTGCTTTGTTaGTTCCGCATGGCTATAGAG | + |
Preference number: 4 (lower is better) Translates to: KNSKGEVVRMLAWSLRGKEIVLC*FRMAIE Trigger: CTCTATAGCCATGCGGAAGCAACAAAGCACTATTTC...CTTCCCCCTAAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR GCA 90 bp | GGGGCCAGTCTGCTCTTCCCTGCCTCAGTTTCTAACAGCAATAAACAAAGAGAAGAAATAGTGCTTTGTTaGTTCCGCATGGCTATAGAG | + |
Preference number: 4 (lower is better) Translates to: GASLLFPASVSNSNKQREEIVLC*FRMAIE Trigger: CTCTATAGCCATGCGGAAGCAACAAAGCACTATTTC...TTCTCTTTGTTTATTGCTGTTAGAAACTGAGGCAGGGAAGAGCAGACTGGCCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CCA 90 bp | CTGCTCTTCCCTGCCTCAGTTTCTAACAGCAATAAACAAAGAGAAGTCCAAGACGAAGTTGGGCACAGGTaGCTGGGGATAAAAGCTAAA | + |
Preference number: 4 (lower is better) Translates to: LLFPASVSNSNKQREVQDEVGHR*LGIKAK Trigger: TTTAGCTTTTATCCCCAGCCACCTGTGCCCAACTTC...GTCTTGGACTTCTCTTTGTTTATTGCTGTTAGAAACTGAGGCAGGGAAGAGCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CCA 90 bp | TTTCTAACAGCAATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGACCACAAACTTGTTGTaGAGTAGCTGCTGTACTTCG | + |
Preference number: 4 (lower is better) Translates to: FLTAINKEKSKTGLAGVGTTNLL*SSCCTS Trigger: CGAAGTACAGCAGCTACTCCACAACAAGTTTGTGGT...CCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATTGCTGTTAGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CCA 90 bp | TCTAACAGCAATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTTACCACAAACTTGTTGTaGAGTAGCTGCTGTACTTCG | + |
Preference number: 4 (lower is better) Translates to: SNSNKQREVQDRTSWGWVTTNLL*SSCCTS Trigger: CGAAGTACAGCAGCTACTCCACAACAAGTTTGTGGT...AACCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATTGCTGTTAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS GCA 90 bp | CAGTGTTCCACACTAGCAGGCACGACTTGGGCAGCACCTGGTCCATaGGCCCAAACAAGTTTTCCAGGTTCTGCTTGTAGCTACTCAAGG | + |
Preference number: 5 (lower is better) Translates to: QCSTLAGTTWAAPGP*AQTSFPGSACSYSR Trigger: CCTTGAGTAGCTACAAGCAGAACCTGGAAAACTTGTTTGGGCGCATGGACCAGGTGCTGCCCAAGTCGTGCCTGCTAGTGTGGAACACTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CAA 90 bp | TTTCTAACAGCAATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGGGGAGGAAGGCCGCCTaGATCTTGTCACCCAAAGGC | + |
Preference number: 5 (lower is better) Translates to: FLTAINKEKSKTGLAGVGGRKAA*ILSPKG Trigger: GCCTTTGGGTGACAAGATCAAGGCGGCCTTCCTCCC...CCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATTGCTGTTAGAAA 51% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CAA 90 bp | AATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTTAGCAAGGTCTTGGTCCTGAGCTGCTaGTTAGTGAGCAGGCAATCC | + |
Preference number: 5 (lower is better) Translates to: NKQREVQDRTSWGWVSKVLVLSC*LVSRQS Trigger: GGATTGCCTGCTCACTAACAAGCAGCTCAGGACCAA...GACCTTGCTAACCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CAA 90 bp | AAAGGCAACAAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTAAGCTCAGCTCCCCCTaGGTCCTGAGCTGCTTGTTA | + |
Preference number: 5 (lower is better) Translates to: KGNKNSKGEVVRMLAWSLKLSSP*VLSCLL Trigger: TAACAAGCAGCTCAGGACCAAGGGGGAGCTGAGCTT...AAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTTGTTGCCTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CAA 90 bp | GGCAACAAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTAGGACGACCACAAACTTGTaGTGGAGTAGCTGCTGTACT | + |
Preference number: 5 (lower is better) Translates to: GNKNSKGEVVRMLAWSLRTTTNL*WSSCCT Trigger: AGTACAGCAGCTACTCCACAACAAGTTTGTGGTCGT...CCTAAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTTGTTGCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CAA 90 bp | AAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTAGGGGGAAGACGACCACAAACTTGTaGTGGAGTAGCTGCTGTACT | + |
Preference number: 5 (lower is better) Translates to: KNSKGEVVRMLAWSLRGKTTTNL*WSSCCT Trigger: AGTACAGCAGCTACTCCACAACAAGTTTGTGGTCGT...CTTCCCCCTAAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CAA 90 bp | TTTCTAACAGCAATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTTGGTCCTGAGCTGCTaGTTAGTGAGCAGGCAATCC | + |
Preference number: 5 (lower is better) Translates to: FLTAINKEKSKTGLAGVGLVLSC*LVSRQS Trigger: GGATTGCCTGCTCACTAACAAGCAGCTCAGGACCAA...CCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATTGCTGTTAGAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CAA 90 bp | TCTAACAGCAATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTTAAGGCCGCCTTGATCTaGTCACCCAAAGGCATAGCA | + |
Preference number: 5 (lower is better) Translates to: SNSNKQREVQDRTSWGWVKAALI*SPKGIA Trigger: TGCTATGCCTTTGGGTGACAAGATCAAGGCGGCCTT...AACCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATTGCTGTTAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CAA 90 bp | TCAGTTTCTAACAGCAATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTAAGGCCGCCTTGATCTaGTCACCCAAAGGCATAGCA | + |
Preference number: 5 (lower is better) Translates to: SVSNSNKQREVQDRTSWGKAALI*SPKGIA Trigger: TGCTATGCCTTTGGGTGACAAGATCAAGGCGGCCTT...ACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATTGCTGTTAGAAACTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CAA 90 bp | GGCAACAAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTAGGGCTATAGAGATTGGCTaGGGTCACTTTCCTTTTCAG | + |
Preference number: 5 (lower is better) Translates to: GNKNSKGEVVRMLAWSLRAIEIG*GHFPFQ Trigger: CTGAAAAGGAAAGTGACCCAAGCCAATCTCTATAGC...CCTAAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTTGTTGCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CAA 90 bp | GGGGCCAGTCTGCTCTTCCCTGCCTCAGTTTCTAACAGCAATAAACAAAGAGAACATCGAAATAGTGCTTaGTTGCTTCCGCATGGCTAT | + |
Preference number: 5 (lower is better) Translates to: GASLLFPASVSNSNKQREHRNSA*LLPHGY Trigger: ATAGCCATGCGGAAGCAACAAAGCACTATTTCGATG...TTCTCTTTGTTTATTGCTGTTAGAAACTGAGGCAGGGAAGAGCAGACTGGCCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CAA 90 bp | GGCAACAAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTAGGGGAAAAATAGGAAACTaGAGGATAGAGTGGGAATGG | + |
Preference number: 5 (lower is better) Translates to: GNKNSKGEVVRMLAWSLRGKIGN*RIEWEW Trigger: CCATTCCCACTCTATCCTCAAGTTTCCTATTTTTCC...CCTAAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTTGTTGCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CAA 90 bp | TTTCTAACAGCAATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGGCTATAGAGATTGGCTaGGGTCACTTTCCTTTTCAG | + |
Preference number: 5 (lower is better) Translates to: FLTAINKEKSKTGLAGVGAIEIG*GHFPFQ Trigger: CTGAAAAGGAAAGTGACCCAAGCCAATCTCTATAGC...CCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATTGCTGTTAGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CAA 90 bp | AAAGGCAACAAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTCATCGAAATAGTGCTTaGTTGCTTCCGCATGGCTAT | + |
Preference number: 5 (lower is better) Translates to: KGNKNSKGEVVRMLAWSLHRNSA*LLPHGY Trigger: ATAGCCATGCGGAAGCAACAAAGCACTATTTCGATG...AAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTTGTTGCCTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS-3UTR CAA 90 bp | AATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTTAGCAAGGTCGGAAAAATAGGAAACTaGAGGATAGAGTGGGAATGG | + |
Preference number: 5 (lower is better) Translates to: NKQREVQDRTSWGWVSKVGKIGN*RIEWEW Trigger: CCATTCCCACTCTATCCTCAAGTTTCCTATTTTTCC...GACCTTGCTAACCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS GCA 72 bp | GGTCAGAGCAGAACTCGCGCACCTCGCGGTAGTCCGTaGGGTTGTGCAGGGTATCCAGCTCGCCTCCCATCT | + |
Preference number: 6 (lower is better) Translates to: GQSRTRAPRGSP*GCAGYPARLPS Trigger: AGATGGGAGGCGAGCTGGATACCCTGCACAACCGCACGGACTACCGCGAGGTGCGCGAGTTCTGCTCTGACC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059433.8 ENSMUST00000226495.2 ENSMUST00000228521.2 |
||
CDS CCA 72 bp | TCCCACGCCTCAAAATCAGGCTCCCATGAGTCTCTCTaGGGCAACTCCACACCCCATGCATCGGCCATGTGG | + |
Preference number: 6 (lower is better) Translates to: SHASKSGSHESL*GNSTPHASAMW Trigger: CCACATGGCCGATGCATGGGGTGTGGAGTTGCCCCAGAGAGACTCATGGGAGCCTGATTTTGAGGCGTGGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS CCA 72 bp | ACGCTGATGACAGGGTGGGCGGAAGTTGGGCACAGGTaGCTGGGGATAAAAGCTAAAGTCGCCCTCAAAGGC | + |
Preference number: 6 (lower is better) Translates to: TLMTGWAEVGHR*LGIKAKVALKG Trigger: GCCTTTGAGGGCGACTTTAGCTTTTATCCCCAGCCACCTGTGCCCAACTTCCGCCCACCCTGTCATCAGCGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS CAA 90 bp | TTGTACACCGCCCTATGCACAGAGTCCCCAAGGACGACCACAAACTaGTTGTGGAGTAGCTGCTGTACTTCGGAGGCCAACAGGCGGACC | + |
Preference number: 6 (lower is better) Translates to: LYTALCTESPRTTTN*LWSSCCTSEANRRT Trigger: GGTCCGCCTGTTGGCCTCCGAAGTACAGCAGCTACTCCACAACAAGTTTGTGGTCGTCCTTGGGGACTCTGTGCATAGGGCGGTGTACAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059433.8 ENSMUST00000226495.2 ENSMUST00000228521.2 |
||
CDS CAA 90 bp | GGGTACTGGCCCTTACACTTCTGTGGGAGGAAGGCCGCCTTGATCTaGTCACCCAAAGGCATAGCAGTGTTCCACACTAGCAGGCACGAC | + |
Preference number: 6 (lower is better) Translates to: GYWPLHFCGRKAALI*SPKGIAVFHTSRHD Trigger: GTCGTGCCTGCTAGTGTGGAACACTGCTATGCCTTTGGGTGACAAGATCAAGGCGGCCTTCCTCCCACAGAAGTGTAAGGGCCAGTACCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS CAA 90 bp | ATCCGGGGGTACTGGCCCTTACACTTCTGTGGGAGGAAGGCCGCCTaGATCTTGTCACCCAAAGGCATAGCAGTGTTCCACACTAGCAGG | + |
Preference number: 6 (lower is better) Translates to: IRGYWPLHFCGRKAA*ILSPKGIAVFHTSR Trigger: CCTGCTAGTGTGGAACACTGCTATGCCTTTGGGTGACAAGATCAAGGCGGCCTTCCTCCCACAGAAGTGTAAGGGCCAGTACCCCCGGAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS CCA 72 bp | GTGTTCCACACTAGCAGGCACGACTTGGGCAGCACCTaGTCCATGCGCCCAAACAAGTTTTCCAGGTTCTGC | + |
Preference number: 6 (lower is better) Translates to: VFHTSRHDLGST*SMRPNKFSRFC Trigger: GCAGAACCTGGAAAACTTGTTTGGGCGCATGGACCAGGTGCTGCCCAAGTCGTGCCTGCTAGTGTGGAACAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS CCA 72 bp | GGTCCTAGGTTGTCTTGGGGCTGCCTTTCCTCTACCTaGCCTGAACTTTCCCACGCCTCAAAATCAGGCTCC | + |
Preference number: 6 (lower is better) Translates to: GPRLSWGCLSST*PELSHASKSGS Trigger: GGAGCCTGATTTTGAGGCGTGGGAAAGTTCAGGCCAGGTAGAGGAAAGGCAGCCCCAAGACAACCTAGGACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS CAA 72 bp | GCCCTATGCACAGAGTCCCCAAGGACGACCACAAACTaGTTGTGGAGTAGCTGCTGTACTTCGGAGGCCAAC | + |
Preference number: 6 (lower is better) Translates to: ALCTESPRTTTN*LWSSCCTSEAN Trigger: GTTGGCCTCCGAAGTACAGCAGCTACTCCACAACAAGTTTGTGGTCGTCCTTGGGGACTCTGTGCATAGGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059433.8 ENSMUST00000226495.2 ENSMUST00000228521.2 |
||
CDS TCA 72 bp | CAGAGGCAAGAGTTCATAATGATCACATCTGGGGCGTaGTTGCCGGATTGGAGCTCCTCTAGGACGCTCTCC | + |
Preference number: 6 (lower is better) Translates to: QRQEFIMITSGA*LPDWSSSRTLS Trigger: GGAGAGCGTCCTAGAGGAGCTCCAATCCGGCAATCACGCCCCAGATGTGATCATTATGAACTCTTGCCTCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS GCA 72 bp | GCATGCTCATTCCAGTGCACGCCATCTCCCTGCAGGTaGTTTCTGGCTTGCCGGAAGTGGAAATTTAAGTCC | + |
Preference number: 6 (lower is better) Translates to: ACSFQCTPSPCR*FLACRKWKFKS Trigger: GGACTTAAATTTCCACTTCCGGCAAGCCAGAAAGCACCTGCAGGGAGATGGCGTGCACTGGAATGAGCATGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS CAA 72 bp | CTATGCACAGAGTCCCCAAGGACGACCACAAACTTGTaGTGGAGTAGCTGCTGTACTTCGGAGGCCAACAGG | + |
Preference number: 6 (lower is better) Translates to: LCTESPRTTTNL*WSSCCTSEANR Trigger: CCTGTTGGCCTCCGAAGTACAGCAGCTACTCCACAACAAGTTTGTGGTCGTCCTTGGGGACTCTGTGCATAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059433.8 ENSMUST00000226495.2 ENSMUST00000228521.2 |
||
CDS CAA 90 bp | ATCGAAATAGTGCTTTGTTGCTTCCGCATGGCTATAGAGATTGGCTaGGGTCACTTTCCTTTTCAGGGTGGCTACCGAGATCCGGGGGTA | + |
Preference number: 6 (lower is better) Translates to: IEIVLCCFRMAIEIG*GHFPFQGGYRDPGV Trigger: TACCCCCGGATCTCGGTAGCCACCCTGAAAAGGAAAGTGACCCAAGCCAATCTCTATAGCCATGCGGAAGCAACAAAGCACTATTTCGAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS CAA 72 bp | GTGCTTTGTTGCTTCCGCATGGCTATAGAGATTGGCTaGGGTCACTTTCCTTTTCAGGGTGGCTACCGAGAT | + |
Preference number: 6 (lower is better) Translates to: VLCCFRMAIEIG*GHFPFQGGYRD Trigger: ATCTCGGTAGCCACCCTGAAAAGGAAAGTGACCCAAGCCAATCTCTATAGCCATGCGGAAGCAACAAAGCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS CAA 90 bp | CTTGCCGGAAGTGGAAATTTAAGTCCAGCACATCGAAATAGTGCTTaGTTGCTTCCGCATGGCTATAGAGATTGGCTTGGGTCACTTTCC | + |
Preference number: 6 (lower is better) Translates to: LAGSGNLSPAHRNSA*LLPHGYRDWLGSLS Trigger: GGAAAGTGACCCAAGCCAATCTCTATAGCCATGCGGAAGCAACAAAGCACTATTTCGATGTGCTGGACTTAAATTTCCACTTCCGGCAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |
||
CDS CAA 90 bp | GCCGGAAGTGGAAATTTAAGTCCAGCACATCGAAATAGTGCTTTGTaGCTTCCGCATGGCTATAGAGATTGGCTTGGGTCACTTTCCTTT | + |
Preference number: 6 (lower is better) Translates to: AGSGNLSPAHRNSAL*LPHGYRDWLGSLSF Trigger: AAAGGAAAGTGACCCAAGCCAATCTCTATAGCCATGCGGAAGCAACAAAGCACTATTTCGATGTGCTGGACTTAAATTTCCACTTCCGGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059433.8 ENSMUST00000228521.2 |