RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PCED1B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000044250

Ensembl transcript IDs: ENSMUST00000059433.8, ENSMUST00000226495.2, ENSMUST00000228521.2

Found 74 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp AACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTTAGCAAGGTCACTGGGCATCTGCTGGGGCTaGGGCAGGGGACATCCTAGT +
Preference number: 4 (lower is better)
Translates to: NKEKSKTGLAGVGLARSLGICWG*GRGHPS
Trigger: ACTAGGATGTCCCCTGCCCCAGCCCCAGCAGATGCC...CAGTGACCTTGCTAACCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CCA 90 bp AAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTAGGGGGAAGGGCATCTGCTGGGGCTaGGGCAGGGGACATCCTAGT +
Preference number: 4 (lower is better)
Translates to: KNSKGEVVRMLAWSLRGKGICWG*GRGHPS
Trigger: ACTAGGATGTCCCCTGCCCCAGCCCCAGCAGATGCC...CTTCCCCCTAAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CCA 90 bp AAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTTAGCAAGGTCACTCTAGCAGGCACGACTTaGGCAGCACCTGGTCCATGC +
Preference number: 4 (lower is better)
Translates to: KQREVQDRTSWGWVSKVTLAGTT*AAPGPC
Trigger: GCATGGACCAGGTGCTGCCCAAGTCGTGCCTGCTAG...AGTGACCTTGCTAACCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR GCA 90 bp AACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTTAGCAAGGTCACTGTTGTACACCGCCCTATaGACAGAGTCCCCAAGGACG +
Preference number: 4 (lower is better)
Translates to: NKEKSKTGLAGVGLARSLLYTAL*TESPRT
Trigger: CGTCCTTGGGGACTCTGTGCATAGGGCGGTGTACAA...CAGTGACCTTGCTAACCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR GCA 90 bp AAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTTAGCAAGGTCACTGCAGGTAGGAGAGCTTaGGGTGCGCATGCTCATTCC +
Preference number: 4 (lower is better)
Translates to: KQREVQDRTSWGWVSKVTAGRRA*GAHAHS
Trigger: GGAATGAGCATGCGCACCGCAAGCTCTCCTACCTGC...AGTGACCTTGCTAACCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CCA 90 bp GGCAACAAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTAGGGAGATCCGGGGGTACTaGCCCTTACACTTCTGTGGG +
Preference number: 4 (lower is better)
Translates to: GNKNSKGEVVRMLAWSLREIRGY*PLHFCG
Trigger: CCCACAGAAGTGTAAGGGCCAGTACCCCCGGATCTC...CCTAAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTTGTTGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CCA 90 bp AAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTTAGCAAGGTCACTGAGATCCGGGGGTACTaGCCCTTACACTTCTGTGGG +
Preference number: 4 (lower is better)
Translates to: KQREVQDRTSWGWVSKVTEIRGY*PLHFCG
Trigger: CCCACAGAAGTGTAAGGGCCAGTACCCCCGGATCTC...AGTGACCTTGCTAACCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CCA 90 bp AACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTTAGCAAGGTCACTGCTTTCCTTTTCAGGGTaGCTACCGAGATCCGGGGGT +
Preference number: 4 (lower is better)
Translates to: NKEKSKTGLAGVGLARSLLSFSG*LPRSGG
Trigger: ACCCCCGGATCTCGGTAGCCACCCTGAAAAGGAAAG...CAGTGACCTTGCTAACCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CCA 90 bp GGCAACAAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTAGGAGGATAGAGTGGGAATaGGGGCATCTGCTGGGGCTG +
Preference number: 4 (lower is better)
Translates to: GNKNSKGEVVRMLAWSLRRIEWE*GHLLGL
Trigger: CAGCCCCAGCAGATGCCCCCATTCCCACTCTATCCT...CCTAAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTTGTTGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR GCA 90 bp GGCAACAAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTAGGTTGTACACCGCCCTATaGACAGAGTCCCCAAGGACG +
Preference number: 4 (lower is better)
Translates to: GNKNSKGEVVRMLAWSLRLYTAL*TESPRT
Trigger: CGTCCTTGGGGACTCTGTGCATAGGGCGGTGTACAA...CCTAAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTTGTTGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR GCA 90 bp TTTCTAACAGCAATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGCAACTCCACACCCCATaGATCGGCCATGTGGGCCAG +
Preference number: 4 (lower is better)
Translates to: FLTAINKEKSKTGLAGVGQLHTP*IGHVGQ
Trigger: CTGGCCCACATGGCCGATGCATGGGGTGTGGAGTTG...CCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATTGCTGTTAGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR GCA 90 bp AAAGGCAACAAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTCAACTCCACACCCCATaGATCGGCCATGTGGGCCAG +
Preference number: 4 (lower is better)
Translates to: KGNKNSKGEVVRMLAWSLQLHTP*IGHVGQ
Trigger: CTGGCCCACATGGCCGATGCATGGGGTGTGGAGTTG...AAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTTGTTGCCTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR GCA 90 bp AAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTAGGGGGAAGAGGTTGTCTTGGGGCTaGCTTTCCTCTACCTGGCCT +
Preference number: 4 (lower is better)
Translates to: KNSKGEVVRMLAWSLRGKRLSWG*LSSTWP
Trigger: AGGCCAGGTAGAGGAAAGGCAGCCCCAAGACAACCT...CTTCCCCCTAAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CCA 90 bp GGGGCCAGTCTGCTCTTCCCTGCCTCAGTTTCTAACAGCAATAAACAAAGAGAACTTTCCTTTTCAGGGTaGCTACCGAGATCCGGGGGT +
Preference number: 4 (lower is better)
Translates to: GASLLFPASVSNSNKQRELSFSG*LPRSGG
Trigger: ACCCCCGGATCTCGGTAGCCACCCTGAAAAGGAAAG...TTCTCTTTGTTTATTGCTGTTAGAAACTGAGGCAGGGAAGAGCAGACTGGCCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CCA 90 bp GGGGCCAGTCTGCTCTTCCCTGCCTCAGTTTCTAACAGCAATAAACAAAGAGAATGCCTTTCCTCTACCTaGCCTGAACTTTCCCACGCC +
Preference number: 4 (lower is better)
Translates to: GASLLFPASVSNSNKQRECLSST*PELSHA
Trigger: GGCGTGGGAAAGTTCAGGCCAGGTAGAGGAAAGGCA...TTCTCTTTGTTTATTGCTGTTAGAAACTGAGGCAGGGAAGAGCAGACTGGCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CCA 90 bp AAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTAGGGGGAAGGGTCCTAGGTTGTCTTaGGGCTGCCTTTCCTCTACC +
Preference number: 4 (lower is better)
Translates to: KNSKGEVVRMLAWSLRGKGPRLS*GCLSST
Trigger: GGTAGAGGAAAGGCAGCCCCAAGACAACCTAGGACC...CTTCCCCCTAAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CCA 90 bp AAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTAGGGGGAAGTCCAGTGTGGGTAGGTaGGGGGCTATCGGAATGGAT +
Preference number: 4 (lower is better)
Translates to: KNSKGEVVRMLAWSLRGKSSVGR*GAIGMD
Trigger: ATCCATTCCGATAGCCCCCCACCTACCCACACTGGA...CTTCCCCCTAAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR TCA 90 bp GGCAACAAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTAGGTTCCTCTACCTGGCCTaGACTTTCCCACGCCTCAAA +
Preference number: 4 (lower is better)
Translates to: GNKNSKGEVVRMLAWSLRFLYLA*TFPRLK
Trigger: TTTGAGGCGTGGGAAAGTTCAGGCCAGGTAGAGGAA...CCTAAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTTGTTGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR GCA 90 bp CTAACAGCAATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTTACCATCTCCCTGCAGGTaGTTTCTGGCTTGCCGGAAG +
Preference number: 4 (lower is better)
Translates to: LTAINKEKSKTGLAGVGLPSPCR*FLACRK
Trigger: CTTCCGGCAAGCCAGAAAGCACCTGCAGGGAGATGG...TAACCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATTGCTGTTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR GCA 90 bp AAAGGCAACAAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTGCAGGTAGGAGAGCTTaGGGTGCGCATGCTCATTCC +
Preference number: 4 (lower is better)
Translates to: KGNKNSKGEVVRMLAWSLAGRRA*GAHAHS
Trigger: GGAATGAGCATGCGCACCGCAAGCTCTCCTACCTGC...AAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTTGTTGCCTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CCA 90 bp AAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTAGGGGGAAGCCTCCCATCTTCAGCTaGTCCTTCTCAAAGCTCAGC +
Preference number: 4 (lower is better)
Translates to: KNSKGEVVRMLAWSLRGKPPIFS*SFSKLS
Trigger: GCTGAGCTTTGAGAAGGACCAGCTGAAGATGGGAGG...CTTCCCCCTAAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CCA 90 bp AATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTTAGCAAGGTCAATTCCGCCCATACCTaGAGACGTCCCAGAGGCAAG +
Preference number: 4 (lower is better)
Translates to: NKQREVQDRTSWGWVSKVNSAHT*RRPRGK
Trigger: CTTGCCTCTGGGACGTCTCCAGGTATGGGCGGAATT...GACCTTGCTAACCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CCA 90 bp CAGTTTCTAACAGCAATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTCTAGCAGGCACGACTTaGGCAGCACCTGGTCCATGC +
Preference number: 4 (lower is better)
Translates to: QFLTAINKEKSKTGLAGVLAGTT*AAPGPC
Trigger: GCATGGACCAGGTGCTGCCCAAGTCGTGCCTGCTAG...AACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATTGCTGTTAGAAACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CCA 90 bp GGCAACAAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTAGGCCTGCAGGTGCTTTCTaGCTTGCCGGAAGTGGAAAT +
Preference number: 4 (lower is better)
Translates to: GNKNSKGEVVRMLAWSLRPAGAF*LAGSGN
Trigger: ATTTCCACTTCCGGCAAGCCAGAAAGCACCTGCAGG...CCTAAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTTGTTGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CCA 90 bp AATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTTAGCAAGGTCGGTCCTAGGTTGTCTTaGGGCTGCCTTTCCTCTACC +
Preference number: 4 (lower is better)
Translates to: NKQREVQDRTSWGWVSKVGPRLS*GCLSST
Trigger: GGTAGAGGAAAGGCAGCCCCAAGACAACCTAGGACC...GACCTTGCTAACCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CCA 90 bp AATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTTAGCAAGGTCGTTTTGGCGGTCGCCTaGGTCTGTCTCTCCAAGGAT +
Preference number: 4 (lower is better)
Translates to: NKQREVQDRTSWGWVSKVVLAVA*VCLSKD
Trigger: ATCCTTGGAGAGACAGACCCAGGCGACCGCCAAAAC...GACCTTGCTAACCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR GCA 90 bp AAAGGCAACAAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTAGGTTGTCTTGGGGCTaGCTTTCCTCTACCTGGCCT +
Preference number: 4 (lower is better)
Translates to: KGNKNSKGEVVRMLAWSLRLSWG*LSSTWP
Trigger: AGGCCAGGTAGAGGAAAGGCAGCCCCAAGACAACCT...AAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTTGTTGCCTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CCA 90 bp CTGCTCTTCCCTGCCTCAGTTTCTAACAGCAATAAACAAAGAGAAGTCCAAGACTGCCTTTCCTCTACCTaGCCTGAACTTTCCCACGCC +
Preference number: 4 (lower is better)
Translates to: LLFPASVSNSNKQREVQDCLSST*PELSHA
Trigger: GGCGTGGGAAAGTTCAGGCCAGGTAGAGGAAAGGCA...GTCTTGGACTTCTCTTTGTTTATTGCTGTTAGAAACTGAGGCAGGGAAGAGCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CCA 90 bp GGGGCCAGTCTGCTCTTCCCTGCCTCAGTTTCTAACAGCAATAAACAAAGAGAATGGGAGAAGGGGAGGTaGTCTAAAAGGACAATGTGG +
Preference number: 4 (lower is better)
Translates to: GASLLFPASVSNSNKQREWEKGR*SKRTMW
Trigger: CCACATTGTCCTTTTAGACCACCTCCCCTTCTCCCA...TTCTCTTTGTTTATTGCTGTTAGAAACTGAGGCAGGGAAGAGCAGACTGGCCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CCA 90 bp CAGTTTCTAACAGCAATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTAGGATAGAGTGGGAATaGGGGCATCTGCTGGGGCTG +
Preference number: 4 (lower is better)
Translates to: QFLTAINKEKSKTGLAGVRIEWE*GHLLGL
Trigger: CAGCCCCAGCAGATGCCCCCATTCCCACTCTATCCT...AACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATTGCTGTTAGAAACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CCA 90 bp CTAACAGCAATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTTATCCAGTGTGGGTAGGTaGGGGGCTATCGGAATGGAT +
Preference number: 4 (lower is better)
Translates to: LTAINKEKSKTGLAGVGLSSVGR*GAIGMD
Trigger: ATCCATTCCGATAGCCCCCCACCTACCCACACTGGA...TAACCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATTGCTGTTAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CCA 90 bp AACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTTAGCAAGGTCACTGGAAGTTGGGCACAGGTaGCTGGGGATAAAAGCTAAA +
Preference number: 4 (lower is better)
Translates to: NKEKSKTGLAGVGLARSLEVGHR*LGIKAK
Trigger: TTTAGCTTTTATCCCCAGCCACCTGTGCCCAACTTC...CAGTGACCTTGCTAACCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CCA 90 bp TCTAACAGCAATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTTGTTTTGGCGGTCGCCTaGGTCTGTCTCTCCAAGGAT +
Preference number: 4 (lower is better)
Translates to: SNSNKQREVQDRTSWGWVVLAVA*VCLSKD
Trigger: ATCCTTGGAGAGACAGACCCAGGCGACCGCCAAAAC...AACCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATTGCTGTTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR TCA 90 bp CTGCTCTTCCCTGCCTCAGTTTCTAACAGCAATAAACAAAGAGAAGTCCAAGACTTCCTCTACCTGGCCTaGACTTTCCCACGCCTCAAA +
Preference number: 4 (lower is better)
Translates to: LLFPASVSNSNKQREVQDFLYLA*TFPRLK
Trigger: TTTGAGGCGTGGGAAAGTTCAGGCCAGGTAGAGGAA...GTCTTGGACTTCTCTTTGTTTATTGCTGTTAGAAACTGAGGCAGGGAAGAGCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CCA 90 bp TTTCTAACAGCAATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGCCTCCCATCTTCAGCTaGTCCTTCTCAAAGCTCAGC +
Preference number: 4 (lower is better)
Translates to: FLTAINKEKSKTGLAGVGPPIFS*SFSKLS
Trigger: GCTGAGCTTTGAGAAGGACCAGCTGAAGATGGGAGG...CCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATTGCTGTTAGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CCA 90 bp AAAGGCAACAAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTCCTGCAGGTGCTTTCTaGCTTGCCGGAAGTGGAAAT +
Preference number: 4 (lower is better)
Translates to: KGNKNSKGEVVRMLAWSLPAGAF*LAGSGN
Trigger: ATTTCCACTTCCGGCAAGCCAGAAAGCACCTGCAGG...AAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTTGTTGCCTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CCA 90 bp TTTCTAACAGCAATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTGGGAGAAGGGGAGGTaGTCTAAAAGGACAATGTGG +
Preference number: 4 (lower is better)
Translates to: FLTAINKEKSKTGLAGVGWEKGR*SKRTMW
Trigger: CCACATTGTCCTTTTAGACCACCTCCCCTTCTCCCA...CCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATTGCTGTTAGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CCA 90 bp CTGCTCTTCCCTGCCTCAGTTTCTAACAGCAATAAACAAAGAGAAGTCCAAGACAACTTGAGGATAGAGTaGGAATGGGGGCATCTGCTG +
Preference number: 4 (lower is better)
Translates to: LLFPASVSNSNKQREVQDNLRIE*EWGHLL
Trigger: CAGCAGATGCCCCCATTCCCACTCTATCCTCAAGTT...GTCTTGGACTTCTCTTTGTTTATTGCTGTTAGAAACTGAGGCAGGGAAGAGCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR GCA 90 bp AAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTAGGGGGAAGGAAATAGTGCTTTGTTaGTTCCGCATGGCTATAGAG +
Preference number: 4 (lower is better)
Translates to: KNSKGEVVRMLAWSLRGKEIVLC*FRMAIE
Trigger: CTCTATAGCCATGCGGAAGCAACAAAGCACTATTTC...CTTCCCCCTAAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR GCA 90 bp GGGGCCAGTCTGCTCTTCCCTGCCTCAGTTTCTAACAGCAATAAACAAAGAGAAGAAATAGTGCTTTGTTaGTTCCGCATGGCTATAGAG +
Preference number: 4 (lower is better)
Translates to: GASLLFPASVSNSNKQREEIVLC*FRMAIE
Trigger: CTCTATAGCCATGCGGAAGCAACAAAGCACTATTTC...TTCTCTTTGTTTATTGCTGTTAGAAACTGAGGCAGGGAAGAGCAGACTGGCCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CCA 90 bp CTGCTCTTCCCTGCCTCAGTTTCTAACAGCAATAAACAAAGAGAAGTCCAAGACGAAGTTGGGCACAGGTaGCTGGGGATAAAAGCTAAA +
Preference number: 4 (lower is better)
Translates to: LLFPASVSNSNKQREVQDEVGHR*LGIKAK
Trigger: TTTAGCTTTTATCCCCAGCCACCTGTGCCCAACTTC...GTCTTGGACTTCTCTTTGTTTATTGCTGTTAGAAACTGAGGCAGGGAAGAGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CCA 90 bp TTTCTAACAGCAATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGACCACAAACTTGTTGTaGAGTAGCTGCTGTACTTCG +
Preference number: 4 (lower is better)
Translates to: FLTAINKEKSKTGLAGVGTTNLL*SSCCTS
Trigger: CGAAGTACAGCAGCTACTCCACAACAAGTTTGTGGT...CCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATTGCTGTTAGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CCA 90 bp TCTAACAGCAATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTTACCACAAACTTGTTGTaGAGTAGCTGCTGTACTTCG +
Preference number: 4 (lower is better)
Translates to: SNSNKQREVQDRTSWGWVTTNLL*SSCCTS
Trigger: CGAAGTACAGCAGCTACTCCACAACAAGTTTGTGGT...AACCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATTGCTGTTAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS GCA 90 bp CAGTGTTCCACACTAGCAGGCACGACTTGGGCAGCACCTGGTCCATaGGCCCAAACAAGTTTTCCAGGTTCTGCTTGTAGCTACTCAAGG +
Preference number: 5 (lower is better)
Translates to: QCSTLAGTTWAAPGP*AQTSFPGSACSYSR
Trigger: CCTTGAGTAGCTACAAGCAGAACCTGGAAAACTTGTTTGGGCGCATGGACCAGGTGCTGCCCAAGTCGTGCCTGCTAGTGTGGAACACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CAA 90 bp TTTCTAACAGCAATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGGGGAGGAAGGCCGCCTaGATCTTGTCACCCAAAGGC +
Preference number: 5 (lower is better)
Translates to: FLTAINKEKSKTGLAGVGGRKAA*ILSPKG
Trigger: GCCTTTGGGTGACAAGATCAAGGCGGCCTTCCTCCC...CCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATTGCTGTTAGAAA
51% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CAA 90 bp AATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTTAGCAAGGTCTTGGTCCTGAGCTGCTaGTTAGTGAGCAGGCAATCC +
Preference number: 5 (lower is better)
Translates to: NKQREVQDRTSWGWVSKVLVLSC*LVSRQS
Trigger: GGATTGCCTGCTCACTAACAAGCAGCTCAGGACCAA...GACCTTGCTAACCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CAA 90 bp AAAGGCAACAAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTAAGCTCAGCTCCCCCTaGGTCCTGAGCTGCTTGTTA +
Preference number: 5 (lower is better)
Translates to: KGNKNSKGEVVRMLAWSLKLSSP*VLSCLL
Trigger: TAACAAGCAGCTCAGGACCAAGGGGGAGCTGAGCTT...AAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTTGTTGCCTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CAA 90 bp GGCAACAAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTAGGACGACCACAAACTTGTaGTGGAGTAGCTGCTGTACT +
Preference number: 5 (lower is better)
Translates to: GNKNSKGEVVRMLAWSLRTTTNL*WSSCCT
Trigger: AGTACAGCAGCTACTCCACAACAAGTTTGTGGTCGT...CCTAAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTTGTTGCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CAA 90 bp AAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTAGGGGGAAGACGACCACAAACTTGTaGTGGAGTAGCTGCTGTACT +
Preference number: 5 (lower is better)
Translates to: KNSKGEVVRMLAWSLRGKTTTNL*WSSCCT
Trigger: AGTACAGCAGCTACTCCACAACAAGTTTGTGGTCGT...CTTCCCCCTAAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CAA 90 bp TTTCTAACAGCAATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTTGGTCCTGAGCTGCTaGTTAGTGAGCAGGCAATCC +
Preference number: 5 (lower is better)
Translates to: FLTAINKEKSKTGLAGVGLVLSC*LVSRQS
Trigger: GGATTGCCTGCTCACTAACAAGCAGCTCAGGACCAA...CCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATTGCTGTTAGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CAA 90 bp TCTAACAGCAATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTTAAGGCCGCCTTGATCTaGTCACCCAAAGGCATAGCA +
Preference number: 5 (lower is better)
Translates to: SNSNKQREVQDRTSWGWVKAALI*SPKGIA
Trigger: TGCTATGCCTTTGGGTGACAAGATCAAGGCGGCCTT...AACCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATTGCTGTTAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CAA 90 bp TCAGTTTCTAACAGCAATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTAAGGCCGCCTTGATCTaGTCACCCAAAGGCATAGCA +
Preference number: 5 (lower is better)
Translates to: SVSNSNKQREVQDRTSWGKAALI*SPKGIA
Trigger: TGCTATGCCTTTGGGTGACAAGATCAAGGCGGCCTT...ACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATTGCTGTTAGAAACTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CAA 90 bp GGCAACAAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTAGGGCTATAGAGATTGGCTaGGGTCACTTTCCTTTTCAG +
Preference number: 5 (lower is better)
Translates to: GNKNSKGEVVRMLAWSLRAIEIG*GHFPFQ
Trigger: CTGAAAAGGAAAGTGACCCAAGCCAATCTCTATAGC...CCTAAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTTGTTGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CAA 90 bp GGGGCCAGTCTGCTCTTCCCTGCCTCAGTTTCTAACAGCAATAAACAAAGAGAACATCGAAATAGTGCTTaGTTGCTTCCGCATGGCTAT +
Preference number: 5 (lower is better)
Translates to: GASLLFPASVSNSNKQREHRNSA*LLPHGY
Trigger: ATAGCCATGCGGAAGCAACAAAGCACTATTTCGATG...TTCTCTTTGTTTATTGCTGTTAGAAACTGAGGCAGGGAAGAGCAGACTGGCCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CAA 90 bp GGCAACAAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTAGGGGAAAAATAGGAAACTaGAGGATAGAGTGGGAATGG +
Preference number: 5 (lower is better)
Translates to: GNKNSKGEVVRMLAWSLRGKIGN*RIEWEW
Trigger: CCATTCCCACTCTATCCTCAAGTTTCCTATTTTTCC...CCTAAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTTGTTGCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CAA 90 bp TTTCTAACAGCAATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGGCTATAGAGATTGGCTaGGGTCACTTTCCTTTTCAG +
Preference number: 5 (lower is better)
Translates to: FLTAINKEKSKTGLAGVGAIEIG*GHFPFQ
Trigger: CTGAAAAGGAAAGTGACCCAAGCCAATCTCTATAGC...CCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATTGCTGTTAGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CAA 90 bp AAAGGCAACAAGAATAGCAAGGGGGAGGTAGTAAGAATGCTTGCTTGGTCACTTCATCGAAATAGTGCTTaGTTGCTTCCGCATGGCTAT +
Preference number: 5 (lower is better)
Translates to: KGNKNSKGEVVRMLAWSLHRNSA*LLPHGY
Trigger: ATAGCCATGCGGAAGCAACAAAGCACTATTTCGATG...AAGTGACCAAGCAAGCATTCTTACTACCTCCCCCTTGCTATTCTTGTTGCCTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS-3UTR CAA 90 bp AATAAACAAAGAGAAGTCCAAGACAGGACTAGCTGGGGTTGGGTTAGCAAGGTCGGAAAAATAGGAAACTaGAGGATAGAGTGGGAATGG +
Preference number: 5 (lower is better)
Translates to: NKQREVQDRTSWGWVSKVGKIGN*RIEWEW
Trigger: CCATTCCCACTCTATCCTCAAGTTTCCTATTTTTCC...GACCTTGCTAACCCAACCCCAGCTAGTCCTGTCTTGGACTTCTCTTTGTTTATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS GCA 72 bp GGTCAGAGCAGAACTCGCGCACCTCGCGGTAGTCCGTaGGGTTGTGCAGGGTATCCAGCTCGCCTCCCATCT +
Preference number: 6 (lower is better)
Translates to: GQSRTRAPRGSP*GCAGYPARLPS
Trigger: AGATGGGAGGCGAGCTGGATACCCTGCACAACCGCACGGACTACCGCGAGGTGCGCGAGTTCTGCTCTGACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059433.8
ENSMUST00000226495.2
ENSMUST00000228521.2
CDS CCA 72 bp TCCCACGCCTCAAAATCAGGCTCCCATGAGTCTCTCTaGGGCAACTCCACACCCCATGCATCGGCCATGTGG +
Preference number: 6 (lower is better)
Translates to: SHASKSGSHESL*GNSTPHASAMW
Trigger: CCACATGGCCGATGCATGGGGTGTGGAGTTGCCCCAGAGAGACTCATGGGAGCCTGATTTTGAGGCGTGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS CCA 72 bp ACGCTGATGACAGGGTGGGCGGAAGTTGGGCACAGGTaGCTGGGGATAAAAGCTAAAGTCGCCCTCAAAGGC +
Preference number: 6 (lower is better)
Translates to: TLMTGWAEVGHR*LGIKAKVALKG
Trigger: GCCTTTGAGGGCGACTTTAGCTTTTATCCCCAGCCACCTGTGCCCAACTTCCGCCCACCCTGTCATCAGCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS CAA 90 bp TTGTACACCGCCCTATGCACAGAGTCCCCAAGGACGACCACAAACTaGTTGTGGAGTAGCTGCTGTACTTCGGAGGCCAACAGGCGGACC +
Preference number: 6 (lower is better)
Translates to: LYTALCTESPRTTTN*LWSSCCTSEANRRT
Trigger: GGTCCGCCTGTTGGCCTCCGAAGTACAGCAGCTACTCCACAACAAGTTTGTGGTCGTCCTTGGGGACTCTGTGCATAGGGCGGTGTACAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000059433.8
ENSMUST00000226495.2
ENSMUST00000228521.2
CDS CAA 90 bp GGGTACTGGCCCTTACACTTCTGTGGGAGGAAGGCCGCCTTGATCTaGTCACCCAAAGGCATAGCAGTGTTCCACACTAGCAGGCACGAC +
Preference number: 6 (lower is better)
Translates to: GYWPLHFCGRKAALI*SPKGIAVFHTSRHD
Trigger: GTCGTGCCTGCTAGTGTGGAACACTGCTATGCCTTTGGGTGACAAGATCAAGGCGGCCTTCCTCCCACAGAAGTGTAAGGGCCAGTACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS CAA 90 bp ATCCGGGGGTACTGGCCCTTACACTTCTGTGGGAGGAAGGCCGCCTaGATCTTGTCACCCAAAGGCATAGCAGTGTTCCACACTAGCAGG +
Preference number: 6 (lower is better)
Translates to: IRGYWPLHFCGRKAA*ILSPKGIAVFHTSR
Trigger: CCTGCTAGTGTGGAACACTGCTATGCCTTTGGGTGACAAGATCAAGGCGGCCTTCCTCCCACAGAAGTGTAAGGGCCAGTACCCCCGGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS CCA 72 bp GTGTTCCACACTAGCAGGCACGACTTGGGCAGCACCTaGTCCATGCGCCCAAACAAGTTTTCCAGGTTCTGC +
Preference number: 6 (lower is better)
Translates to: VFHTSRHDLGST*SMRPNKFSRFC
Trigger: GCAGAACCTGGAAAACTTGTTTGGGCGCATGGACCAGGTGCTGCCCAAGTCGTGCCTGCTAGTGTGGAACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS CCA 72 bp GGTCCTAGGTTGTCTTGGGGCTGCCTTTCCTCTACCTaGCCTGAACTTTCCCACGCCTCAAAATCAGGCTCC +
Preference number: 6 (lower is better)
Translates to: GPRLSWGCLSST*PELSHASKSGS
Trigger: GGAGCCTGATTTTGAGGCGTGGGAAAGTTCAGGCCAGGTAGAGGAAAGGCAGCCCCAAGACAACCTAGGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS CAA 72 bp GCCCTATGCACAGAGTCCCCAAGGACGACCACAAACTaGTTGTGGAGTAGCTGCTGTACTTCGGAGGCCAAC +
Preference number: 6 (lower is better)
Translates to: ALCTESPRTTTN*LWSSCCTSEAN
Trigger: GTTGGCCTCCGAAGTACAGCAGCTACTCCACAACAAGTTTGTGGTCGTCCTTGGGGACTCTGTGCATAGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000059433.8
ENSMUST00000226495.2
ENSMUST00000228521.2
CDS TCA 72 bp CAGAGGCAAGAGTTCATAATGATCACATCTGGGGCGTaGTTGCCGGATTGGAGCTCCTCTAGGACGCTCTCC +
Preference number: 6 (lower is better)
Translates to: QRQEFIMITSGA*LPDWSSSRTLS
Trigger: GGAGAGCGTCCTAGAGGAGCTCCAATCCGGCAATCACGCCCCAGATGTGATCATTATGAACTCTTGCCTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS GCA 72 bp GCATGCTCATTCCAGTGCACGCCATCTCCCTGCAGGTaGTTTCTGGCTTGCCGGAAGTGGAAATTTAAGTCC +
Preference number: 6 (lower is better)
Translates to: ACSFQCTPSPCR*FLACRKWKFKS
Trigger: GGACTTAAATTTCCACTTCCGGCAAGCCAGAAAGCACCTGCAGGGAGATGGCGTGCACTGGAATGAGCATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS CAA 72 bp CTATGCACAGAGTCCCCAAGGACGACCACAAACTTGTaGTGGAGTAGCTGCTGTACTTCGGAGGCCAACAGG +
Preference number: 6 (lower is better)
Translates to: LCTESPRTTTNL*WSSCCTSEANR
Trigger: CCTGTTGGCCTCCGAAGTACAGCAGCTACTCCACAACAAGTTTGTGGTCGTCCTTGGGGACTCTGTGCATAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000059433.8
ENSMUST00000226495.2
ENSMUST00000228521.2
CDS CAA 90 bp ATCGAAATAGTGCTTTGTTGCTTCCGCATGGCTATAGAGATTGGCTaGGGTCACTTTCCTTTTCAGGGTGGCTACCGAGATCCGGGGGTA +
Preference number: 6 (lower is better)
Translates to: IEIVLCCFRMAIEIG*GHFPFQGGYRDPGV
Trigger: TACCCCCGGATCTCGGTAGCCACCCTGAAAAGGAAAGTGACCCAAGCCAATCTCTATAGCCATGCGGAAGCAACAAAGCACTATTTCGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS CAA 72 bp GTGCTTTGTTGCTTCCGCATGGCTATAGAGATTGGCTaGGGTCACTTTCCTTTTCAGGGTGGCTACCGAGAT +
Preference number: 6 (lower is better)
Translates to: VLCCFRMAIEIG*GHFPFQGGYRD
Trigger: ATCTCGGTAGCCACCCTGAAAAGGAAAGTGACCCAAGCCAATCTCTATAGCCATGCGGAAGCAACAAAGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS CAA 90 bp CTTGCCGGAAGTGGAAATTTAAGTCCAGCACATCGAAATAGTGCTTaGTTGCTTCCGCATGGCTATAGAGATTGGCTTGGGTCACTTTCC +
Preference number: 6 (lower is better)
Translates to: LAGSGNLSPAHRNSA*LLPHGYRDWLGSLS
Trigger: GGAAAGTGACCCAAGCCAATCTCTATAGCCATGCGGAAGCAACAAAGCACTATTTCGATGTGCTGGACTTAAATTTCCACTTCCGGCAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2
CDS CAA 90 bp GCCGGAAGTGGAAATTTAAGTCCAGCACATCGAAATAGTGCTTTGTaGCTTCCGCATGGCTATAGAGATTGGCTTGGGTCACTTTCCTTT +
Preference number: 6 (lower is better)
Translates to: AGSGNLSPAHRNSAL*LPHGYRDWLGSLSF
Trigger: AAAGGAAAGTGACCCAAGCCAATCTCTATAGCCATGCGGAAGCAACAAAGCACTATTTCGATGTGCTGGACTTAAATTTCCACTTCCGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059433.8
ENSMUST00000228521.2