RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PCDHGC5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000102543

Ensembl transcript IDs: ENSMUST00000055935.11, ENSMUST00000193941.2

Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTGCTGGAGCCTTGCCATCTCGTTTGCCAGCGGCATTGGTCAGCGTaGCATTGCTGCCAGGGATGTACACGTTCTGGCGGTAGTCAGGCA +
Preference number: 1 (lower is better)
Translates to: LLEPCHLVCQRHWSA*HCCQGCTRSGGSQA
Trigger: TGCCTGACTACCGCCAGAACGTGTACATCCCTGGCAGCAATGCCACGCTGACCAATGCCGCTGGCAAACGAGATGGCAAGGCTCCAGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193941.2
3UTR CCA 90 bp CATTACCACCTGCTGGAGCCTTGCCATCTCGTTTGCCAGCGGCATTaGTCAGCGTGGCATTGCTGCCAGGGATGTACACGTTCTGGCGGT +
Preference number: 1 (lower is better)
Translates to: HYHLLEPCHLVCQRH*SAWHCCQGCTRSGG
Trigger: ACCGCCAGAACGTGTACATCCCTGGCAGCAATGCCACGCTGACCAATGCCGCTGGCAAACGAGATGGCAAGGCTCCAGCAGGTGGTAATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193941.2
3UTR CAA 90 bp CCATTACCACCTGCTGGAGCCTTGCCATCTCGTTTGCCAGCGGCATaGGTCAGCGTGGCATTGCTGCCAGGGATGTACACGTTCTGGCGG +
Preference number: 2 (lower is better)
Translates to: PLPPAGALPSRLPAA*VSVALLPGMYTFWR
Trigger: CCGCCAGAACGTGTACATCCCTGGCAGCAATGCCACGCTGACCAATGCCGCTGGCAAACGAGATGGCAAGGCTCCAGCAGGTGGTAATGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193941.2
3UTR CAA 90 bp TTCTTCTTGTTGCCATTACCACCTGCTGGAGCCTTGCCATCTCGTTaGCCAGCGGCATTGGTCAGCGTGGCATTGCTGCCAGGGATGTAC +
Preference number: 2 (lower is better)
Translates to: FFLLPLPPAGALPSR*PAALVSVALLPGMY
Trigger: GTACATCCCTGGCAGCAATGCCACGCTGACCAATGCCGCTGGCAAACGAGATGGCAAGGCTCCAGCAGGTGGTAATGGCAACAAGAAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193941.2
3UTR CAA 90 bp TTCTTGCCCGATTTCTTCTTGTTGCCATTACCACCTGCTGGAGCCTaGCCATCTCGTTTGCCAGCGGCATTGGTCAGCGTGGCATTGCTG +
Preference number: 2 (lower is better)
Translates to: FLPDFFLLPLPPAGA*PSRLPAALVSVALL
Trigger: CAGCAATGCCACGCTGACCAATGCCGCTGGCAAACGAGATGGCAAGGCTCCAGCAGGTGGTAATGGCAACAAGAAGAAATCGGGCAAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193941.2
3UTR CAA 90 bp GGTACAAGTAAGGACGAGCTGGACTGGCTGGGGAGGGAGGCTGCCTaGTGGTTCAAGGCCTGGCCTCCATATTACTTCTTCTCTTTCTTG +
Preference number: 2 (lower is better)
Translates to: GTSKDELDWLGREAA*WFKAWPPYYFFSFL
Trigger: CAAGAAAGAGAAGAAGTAATATGGAGGCCAGGCCTTGAACCACAAGGCAGCCTCCCTCCCCAGCCAGTCCAGCTCGTCCTTACTTGTACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193941.2
3UTR CAA 90 bp GCCTTGTGGTTCAAGGCCTGGCCTCCATATTACTTCTTCTCTTTCTaGCCCGATTTCTTCTTGTTGCCATTACCACCTGCTGGAGCCTTG +
Preference number: 2 (lower is better)
Translates to: ALWFKAWPPYYFFSF*PDFFLLPLPPAGAL
Trigger: CAAGGCTCCAGCAGGTGGTAATGGCAACAAGAAGAAATCGGGCAAGAAAGAGAAGAAGTAATATGGAGGCCAGGCCTTGAACCACAAGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193941.2
3UTR-3UTR CAA 90 bp CTGGGGAGGGAGGCTGCCTTGTGGTTCAAGGCCTGGCCTCCATATTACTTCTTCCGTTTGCCAGCGGCATaGGTCAGCGTGGCATTGCTG +
Preference number: 3 (lower is better)
Translates to: LGREAALWFKAWPPYYFFRLPAA*VSVALL
Trigger: CAGCAATGCCACGCTGACCAATGCCGCTGGCAAACG...GAAGAAGTAATATGGAGGCCAGGCCTTGAACCACAAGGCAGCCTCCCTCCCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193941.2
3UTR CAA 72 bp CCTGCTGGAGCCTTGCCATCTCGTTTGCCAGCGGCATaGGTCAGCGTGGCATTGCTGCCAGGGATGTACACG +
Preference number: 4 (lower is better)
Translates to: PAGALPSRLPAA*VSVALLPGMYT
Trigger: CGTGTACATCCCTGGCAGCAATGCCACGCTGACCAATGCCGCTGGCAAACGAGATGGCAAGGCTCCAGCAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193941.2
CDS-3UTR CCA 90 bp ATCTCGTTTGCCAGCGGCATTGGTCAGCGTGGCATTGCTGCCAGGGATGTACACAACGCCAGTCAGTGTTaGGCGGGGCTTGCATTTCCC +
Preference number: 4 (lower is better)
Translates to: ISFASGIGQRGIAARDVHNASQC*AGLAFP
Trigger: GGGAAATGCAAGCCCCGCCCAACACTGACTGGCGTT...GTGTACATCCCTGGCAGCAATGCCACGCTGACCAATGCCGCTGGCAAACGAGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193941.2
3UTR CAA 72 bp TTGCCATTACCACCTGCTGGAGCCTTGCCATCTCGTTaGCCAGCGGCATTGGTCAGCGTGGCATTGCTGCCA +
Preference number: 4 (lower is better)
Translates to: LPLPPAGALPSR*PAALVSVALLP
Trigger: TGGCAGCAATGCCACGCTGACCAATGCCGCTGGCAAACGAGATGGCAAGGCTCCAGCAGGTGGTAATGGCAA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193941.2
3UTR CAA 72 bp GATTTCTTCTTGTTGCCATTACCACCTGCTGGAGCCTaGCCATCTCGTTTGCCAGCGGCATTGGTCAGCGTG +
Preference number: 4 (lower is better)
Translates to: DFFLLPLPPAGA*PSRLPAALVSV
Trigger: CACGCTGACCAATGCCGCTGGCAAACGAGATGGCAAGGCTCCAGCAGGTGGTAATGGCAACAAGAAGAAATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193941.2
CDS TCA 90 bp CGGGAACGCAAGGCCTCGGGTTCCAGCGCCAAGGCTGAGGGCTGCTaGACGCTGAGGGGCCTGAGGAAAGTGAAGTCACTGCCATCCGAG +
Preference number: 5 (lower is better)
Translates to: RERKASGSSAKAEGC*TLRGLRKVKSLPSE
Trigger: CTCGGATGGCAGTGACTTCACTTTCCTCAGGCCCCTCAGCGTTCAGCAGCCCTCAGCCTTGGCGCTGGAACCCGAGGCCTTGCGTTCCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS TCA 90 bp CGTACTAGAGCGGGAACGCAAGGCCTCGGGTTCCAGCGCCAAGGCTaGGGGCTGCTGAACGCTGAGGGGCCTGAGGAAAGTGAAGTCACT +
Preference number: 5 (lower is better)
Translates to: RTRAGTQGLGFQRQG*GLLNAEGPEESEVT
Trigger: AGTGACTTCACTTTCCTCAGGCCCCTCAGCGTTCAGCAGCCCTCAGCCTTGGCGCTGGAACCCGAGGCCTTGCGTTCCCGCTCTAGTACG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS TCA 90 bp TGGGTCTTGGGCACTATCCAGTGGGAACCTGGCTCCAGGTGCAGCTaGTTCCGAGATGCGCATCTCTCGATCAGGAGTGGCAAAGCTGGG +
Preference number: 5 (lower is better)
Translates to: WVLGTIQWEPGSRCS*FRDAHLSIRSGKAG
Trigger: CCCAGCTTTGCCACTCCTGATCGAGAGATGCGCATCTCGGAATCAGCTGCACCTGGAGCCAGGTTCCCACTGGATAGTGCCCAAGACCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS GCA 90 bp CCACCTGTTGGGTATCAGAGTCATCCTCCAATAAGGCCCGGGCTGTaGGCACCTCACCAGTGTGTGCAGATACAAGGAACAGTCCGGGGG +
Preference number: 5 (lower is better)
Translates to: PPVGYQSHPPIRPGL*APHQCVQIQGTVRG
Trigger: CCCCCGGACTGTTCCTTGTATCTGCACACACTGGTGAGGTGCGCACAGCCCGGGCCTTATTGGAGGATGACTCTGATACCCAACAGGTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS-3UTR CAA 90 bp TCAGCGTGGCATTGCTGCCAGGGATGTACACGTTCTGGCGGTAGTCAGGCACGTAAACGCCAGTCAGTGTaGGGCGGGGCTTGCATTTCC +
Preference number: 5 (lower is better)
Translates to: SAWHCCQGCTRSGGSQARKRQSV*GGACIS
Trigger: GGAAATGCAAGCCCCGCCCAACACTGACTGGCGTTT...ACGTGCCTGACTACCGCCAGAACGTGTACATCCCTGGCAGCAATGCCACGCTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193941.2
CDS GCA 90 bp ACCAAAGTCCCCGGCTCAGACTCCTCCACCACTGAATACCGAAGCTaGCCAGACACCCAGCCACAGCAGCACAAGGACAACATACACAGC +
Preference number: 5 (lower is better)
Translates to: TKVPGSDSSTTEYRS*PDTQPQQHKDNIHS
Trigger: GCTGTGTATGTTGTCCTTGTGCTGCTGTGGCTGGGTGTCTGGGCAGCTTCGGTATTCAGTGGTGGAGGAGTCTGAGCCGGGGACTTTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS CCA 90 bp CCATGTACTTTAGTGTGCCATCTGAGCTCACCTGGAGGTTGGGGCTaGACTGCTTATAGAACTCCCTGGAGGGTGAGTCCTGGCCCCTGC +
Preference number: 5 (lower is better)
Translates to: PCTLVCHLSSPGGWG*TAYRTPWRVSPGPC
Trigger: GCAGGGGCCAGGACTCACCCTCCAGGGAGTTCTATAAGCAGTCCAGCCCCAACCTCCAGGTGAGCTCAGATGGCACACTAAAGTACATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS CCA 90 bp AGGCCGGAGAAAAGCAGGTCCTGTAGCAATGGCTCTGAGAGTCCGTaGGCCGCAGGGTCACCTCCATGTACTTTAGTGTGCCATCTGAGC +
Preference number: 5 (lower is better)
Translates to: RPEKSRSCSNGSESP*AAGSPPCTLVCHLS
Trigger: GCTCAGATGGCACACTAAAGTACATGGAGGTGACCCTGCGGCCCACGGACTCTCAGAGCCATTGCTACAGGACCTGCTTTTCTCCGGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS GCA 90 bp TCTGAGAGTCCGTGGGCCGCAGGGTCACCTCCATGTACTTTAGTGTaGCATCTGAGCTCACCTGGAGGTTGGGGCTGGACTGCTTATAGA +
Preference number: 5 (lower is better)
Translates to: SESPWAAGSPPCTLV*HLSSPGGWGWTAYR
Trigger: TCTATAAGCAGTCCAGCCCCAACCTCCAGGTGAGCTCAGATGGCACACTAAAGTACATGGAGGTGACCCTGCGGCCCACGGACTCTCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS TCA 90 bp CATAGTCAAAGGTCCGCTGGGCAAAGATTCGTCCATCCTCGGGGTTaGCATACACAAAGGAGGAGGCTGGGGCTCCCTGGATTTGACTCC +
Preference number: 5 (lower is better)
Translates to: HSQRSAGQRFVHPRG*HTQRRRLGLPGFDS
Trigger: GGAGTCAAATCCAGGGAGCCCCAGCCTCCTCCTTTGTGTATGTCAACCCCGAGGATGGACGAATCTTTGCCCAGCGGACCTTTGACTATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS CCA 90 bp TCACCTCCATGTACTTTAGTGTGCCATCTGAGCTCACCTGGAGGTTaGGGCTGGACTGCTTATAGAACTCCCTGGAGGGTGAGTCCTGGC +
Preference number: 5 (lower is better)
Translates to: SPPCTLVCHLSSPGG*GWTAYRTPWRVSPG
Trigger: GCCAGGACTCACCCTCCAGGGAGTTCTATAAGCAGTCCAGCCCCAACCTCCAGGTGAGCTCAGATGGCACACTAAAGTACATGGAGGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS TCA 90 bp TCCCTGCCAGGTCGTGGGTGCAGCACAGCTGGGGCATTATCATTCTaGTCGAGGACAAACACATGGAGAGATGTGTTAGCATGCAGTCGG +
Preference number: 5 (lower is better)
Translates to: SLPGRGCSTAGALSF*SRTNTWRDVLACSR
Trigger: CCGACTGCATGCTAACACATCTCTCCATGTGTTTGTCCTCGATCAGAATGATAATGCCCCAGCTGTGCTGCACCCACGACCTGGCAGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS GCA 90 bp CTCAGGAGGGTGTGTGAGGAAGTCACTGGATTTGGGCATTTCCTCTaGATCCTCGTCCTCCAGAACCAGCAGTACTGTTGCTGTGGAGGA +
Preference number: 5 (lower is better)
Translates to: LRRVCEEVTGFGHFL*ILVLQNQQYCCCGG
Trigger: TCCTCCACAGCAACAGTACTGCTGGTTCTGGAGGACGAGGATGCAGAGGAAATGCCCAAATCCAGTGACTTCCTCACACACCCTCCTGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS CCA 90 bp GCACCTCACCAGTGTGTGCAGATACAAGGAACAGTCCGGGGGCTGTaGACTGTGGTAAGAGAGAGTAAGAGAGCCATGCATTGTGACCAG +
Preference number: 5 (lower is better)
Translates to: APHQCVQIQGTVRGL*TVVRESKRAMHCDQ
Trigger: CTGGTCACAATGCATGGCTCTCTTACTCTCTCTTACCACAGTCCACAGCCCCCGGACTGTTCCTTGTATCTGCACACACTGGTGAGGTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS TCA 90 bp ATAATGGGATGTGGCCTCTCGGTCCAGAGGCTGGCTGGTGAGCAGTaGGTAGTGGTTCTCAGAAGGCTTGATCTGAAATGGCAGGTTTGG +
Preference number: 5 (lower is better)
Translates to: IMGCGLSVQRLAGEQ*VVVLRRLDLKWQVW
Trigger: CCAAACCTGCCATTTCAGATCAAGCCTTCTGAGAACCACTACTCACTGCTCACCAGCCAGCCTCTGGACCGAGAGGCCACATCCCATTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS GCA 90 bp AGTGCTGGCTCCGCACAGGCTCTCTCGGTCAATTTTCTGACTCACTaGCAAAGCTCCGCTCACCAAACTCAGGGAAAAATAGCGCCCATT +
Preference number: 5 (lower is better)
Translates to: SAGSAQALSVNFLTH*QSSAHQTQGKIAPI
Trigger: AATGGGCGCTATTTTTCCCTGAGTTTGGTGAGCGGAGCTTTGGCAGTGAGTCAGAAAATTGACCGAGAGAGCCTGTGCGGAGCCAGCACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS CCA 90 bp AAAGATTCGTCCATCCTCGGGGTTGACATACACAAAGGAGGAGGCTaGGGCTCCCTGGATTTGACTCCCCACAATAGAATAGGTGAGGCG +
Preference number: 5 (lower is better)
Translates to: KDSSILGVDIHKGGG*GSLDLTPHNRIGEA
Trigger: CGCCTCACCTATTCTATTGTGGGGAGTCAAATCCAGGGAGCCCCAGCCTCCTCCTTTGTGTATGTCAACCCCGAGGATGGACGAATCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS CCA 90 bp TTTCCTCTGCATCCTCGTCCTCCAGAACCAGCAGTACTGTTGCTGTaGAGGATAGTGAAGGGTCACCATTATCCCTCACCAGGACCACCA +
Preference number: 5 (lower is better)
Translates to: FPLHPRPPEPAVLLL*RIVKGHHYPSPGPP
Trigger: TGGTGGTCCTGGTGAGGGATAATGGTGACCCTTCACTATCCTCCACAGCAACAGTACTGCTGGTTCTGGAGGACGAGGATGCAGAGGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS GCA 90 bp TCAGGGAAAAATAGCGCCCATTCTCCTCAGAGCCCAATCTCAGCCTaGGGCTCAATAGATCTGTCCCCTTTAAGCCCAGATCTTGAGCAA +
Preference number: 5 (lower is better)
Translates to: SGKNSAHSPQSPISA*GSIDLSPLSPDLEQ
Trigger: TTGCTCAAGATCTGGGCTTAAAGGGGACAGATCTATTGAGCCGCAGGCTGAGATTGGGCTCTGAGGAGAATGGGCGCTATTTTTCCCTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS CCA 90 bp AGCATCCCCTACATCTACTTGAATTACACAGTGGCCCTCCATGGCTaGCTGTCCCTGGTCTCGAGCTCTTGCATGAATTTCATAGAAATT +
Preference number: 5 (lower is better)
Translates to: SIPYIYLNYTVALHG*LSLVSSSCMNFIEI
Trigger: AATTTCTATGAAATTCATGCAAGAGCTCGAGACCAGGGACAGCCAGCCATGGAGGGCCACTGTGTAATTCAAGTAGATGTAGGGGATGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS TCA 90 bp TGGCTGTCCCTGGTCTCGAGCTCTTGCATGAATTTCATAGAAATTTaGTTCCTCAAAATCTACTGGACCCAACACATGGATTGCTCCACT +
Preference number: 5 (lower is better)
Translates to: WLSLVSSSCMNFIEI*FLKIYWTQHMDCST
Trigger: AGTGGAGCAATCCATGTGTTGGGTCCAGTAGATTTTGAGGAATCAAATTTCTATGAAATTCATGCAAGAGCTCGAGACCAGGGACAGCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS TCA 72 bp ACCAGGAGGAGCAGATCGGGGGAGACGCTGAGGGGCTaGGAACTCCCTGCCAGGTCGTGGGTGCAGCACAGC +
Preference number: 6 (lower is better)
Translates to: TRRSRSGETLRG*ELPARSWVQHS
Trigger: GCTGTGCTGCACCCACGACCTGGCAGGGAGTTCTCAGCCCCTCAGCGTCTCCCCCGATCTGCTCCTCCTGGT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS CCA 72 bp CGGGTCTCTGGGCTTGAGAGAAACGCCAGTCAGTGTTaGGCGGGGCTTGCTGGCTCCGCTCCCGCAGCGTAC +
Preference number: 6 (lower is better)
Translates to: RVSGLERNASQC*AGLAGSAPAAY
Trigger: GTACGCTGCGGGAGCGGAGCCAGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCCCAGAGACCCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS CCA 72 bp CCTGGAGGTTGGGGCTGGACTGCTTATAGAACTCCCTaGAGGGTGAGTCCTGGCCCCTGCAGCAGTGGCCCC +
Preference number: 6 (lower is better)
Translates to: PGGWGWTAYRTP*RVSPGPCSSGP
Trigger: GGGGCCACTGCTGCAGGGGCCAGGACTCACCCTCCAGGGAGTTCTATAAGCAGTCCAGCCCCAACCTCCAGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS TCA 72 bp AAGGCCTCGGGTTCCAGCGCCAAGGCTGAGGGCTGCTaGACGCTGAGGGGCCTGAGGAAAGTGAAGTCACTG +
Preference number: 6 (lower is better)
Translates to: KASGSSAKAEGC*TLRGLRKVKSL
Trigger: CAGTGACTTCACTTTCCTCAGGCCCCTCAGCGTTCAGCAGCCCTCAGCCTTGGCGCTGGAACCCGAGGCCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS GCA 72 bp CCCGGCTCAGACTCCTCCACCACTGAATACCGAAGCTaGCCAGACACCCAGCCACAGCAGCACAAGGACAAC +
Preference number: 6 (lower is better)
Translates to: PGSDSSTTEYRS*PDTQPQQHKDN
Trigger: GTTGTCCTTGTGCTGCTGTGGCTGGGTGTCTGGGCAGCTTCGGTATTCAGTGGTGGAGGAGTCTGAGCCGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS GCA 72 bp CCGTGGGCCGCAGGGTCACCTCCATGTACTTTAGTGTaGCATCTGAGCTCACCTGGAGGTTGGGGCTGGACT +
Preference number: 6 (lower is better)
Translates to: PWAAGSPPCTLV*HLSSPGGWGWT
Trigger: AGTCCAGCCCCAACCTCCAGGTGAGCTCAGATGGCACACTAAAGTACATGGAGGTGACCCTGCGGCCCACGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS TCA 72 bp GGCACTATCCAGTGGGAACCTGGCTCCAGGTGCAGCTaGTTCCGAGATGCGCATCTCTCGATCAGGAGTGGC +
Preference number: 6 (lower is better)
Translates to: GTIQWEPGSRCS*FRDAHLSIRSG
Trigger: GCCACTCCTGATCGAGAGATGCGCATCTCGGAATCAGCTGCACCTGGAGCCAGGTTCCCACTGGATAGTGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS TCA 72 bp AGGTCCGCTGGGCAAAGATTCGTCCATCCTCGGGGTTaGCATACACAAAGGAGGAGGCTGGGGCTCCCTGGA +
Preference number: 6 (lower is better)
Translates to: RSAGQRFVHPRG*HTQRRRLGLPG
Trigger: TCCAGGGAGCCCCAGCCTCCTCCTTTGTGTATGTCAACCCCGAGGATGGACGAATCTTTGCCCAGCGGACCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS GCA 72 bp GTGGGAACCTGGCTCCAGGTGCAGCTGATTCCGAGATaGGCATCTCTCGATCAGGAGTGGCAAAGCTGGGAG +
Preference number: 6 (lower is better)
Translates to: VGTWLQVQLIPR*ASLDQEWQSWE
Trigger: CTCCCAGCTTTGCCACTCCTGATCGAGAGATGCGCATCTCGGAATCAGCTGCACCTGGAGCCAGGTTCCCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS CAA 72 bp AAGGTCCGCTGGGCAAAGATTCGTCCATCCTCGGGGTaGACATACACAAAGGAGGAGGCTGGGGCTCCCTGG +
Preference number: 6 (lower is better)
Translates to: KVRWAKIRPSSG*TYTKEEAGAPW
Trigger: CCAGGGAGCCCCAGCCTCCTCCTTTGTGTATGTCAACCCCGAGGATGGACGAATCTTTGCCCAGCGGACCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS CAA 72 bp GGCTTGAGAGAAACGCCAGTCAGTGTTGGGCGGGGCTaGCATTTCCCAGCGACCTGTGGTGATGCCATAGGC +
Preference number: 6 (lower is better)
Translates to: GLRETPVSVGRG*HFPATCGDAIG
Trigger: GCCTATGGCATCACCACAGGTCGCTGGGAAATGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193941.2
CDS CAA 90 bp ATGCGCATCTCTCGATCAGGAGTGGCAAAGCTGGGAGAGTTGTCATaGAGGTCCAGGATCTCTACCTCTACCCGGGTGAGCTCCAGTGGG +
Preference number: 6 (lower is better)
Translates to: MRISRSGVAKLGELS*RSRISTSTRVSSSG
Trigger: CCCACTGGAGCTCACCCGGGTAGAGGTAGAGATCCTGGACCTCAATGACAACTCTCCCAGCTTTGCCACTCCTGATCGAGAGATGCGCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS TCA 72 bp GTGCTGGCTCCGCACAGGCTCTCTCGGTCAATTTTCTaGCTCACTGCCAAAGCTCCGCTCACCAAACTCAGG +
Preference number: 6 (lower is better)
Translates to: VLAPHRLSRSIF*LTAKAPLTKLR
Trigger: CCTGAGTTTGGTGAGCGGAGCTTTGGCAGTGAGTCAGAAAATTGACCGAGAGAGCCTGTGCGGAGCCAGCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS GCA 72 bp CAGCCACAGCAGCACAAGGACAACATACACAGCACTTaGCATTTCCCAGCGACCTGTGGTGATGCCATAGGC +
Preference number: 6 (lower is better)
Translates to: QPQQHKDNIHST*HFPATCGDAIG
Trigger: GCCTATGGCATCACCACAGGTCGCTGGGAAATGGCAAGTGCTGTGTATGTTGTCCTTGTGCTGCTGTGGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS CCA 72 bp AAAAGCAGGTCCTGTAGCAATGGCTCTGAGAGTCCGTaGGCCGCAGGGTCACCTCCATGTACTTTAGTGTGC +
Preference number: 6 (lower is better)
Translates to: KSRSCSNGSESP*AAGSPPCTLVC
Trigger: GCACACTAAAGTACATGGAGGTGACCCTGCGGCCCACGGACTCTCAGAGCCATTGCTACAGGACCTGCTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS CCA 72 bp TGTACTTTAGTGTGCCATCTGAGCTCACCTGGAGGTTaGGGCTGGACTGCTTATAGAACTCCCTGGAGGGTG +
Preference number: 6 (lower is better)
Translates to: CTLVCHLSSPGG*GWTAYRTPWRV
Trigger: CACCCTCCAGGGAGTTCTATAAGCAGTCCAGCCCCAACCTCCAGGTGAGCTCAGATGGCACACTAAAGTACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS CAA 72 bp GACATACACAAAGGAGGAGGCTGGGGCTCCCTGGATTaGACTCCCCACAATAGAATAGGTGAGGCGGGCATT +
Preference number: 6 (lower is better)
Translates to: DIHKGGGWGSLD*TPHNRIGEAGI
Trigger: AATGCCCGCCTCACCTATTCTATTGTGGGGAGTCAAATCCAGGGAGCCCCAGCCTCCTCCTTTGTGTATGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS GCA 72 bp AATAGCGCCCATTCTCCTCAGAGCCCAATCTCAGCCTaGGGCTCAATAGATCTGTCCCCTTTAAGCCCAGAT +
Preference number: 6 (lower is better)
Translates to: NSAHSPQSPISA*GSIDLSPLSPD
Trigger: ATCTGGGCTTAAAGGGGACAGATCTATTGAGCCGCAGGCTGAGATTGGGCTCTGAGGAGAATGGGCGCTATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS CCA 72 bp GAGAGTATAAAAGCTCACAGTATTGGTGCCCACATCTaGGTCTTGGGCACTATCCAGTGGGAACCTGGCTCC +
Preference number: 6 (lower is better)
Translates to: ESIKAHSIGAHI*VLGTIQWEPGS
Trigger: GGAGCCAGGTTCCCACTGGATAGTGCCCAAGACCCAGATGTGGGCACCAATACTGTGAGCTTTTATACTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS CCA 72 bp TCCATCCTCGGGGTTGACATACACAAAGGAGGAGGCTaGGGCTCCCTGGATTTGACTCCCCACAATAGAATA +
Preference number: 6 (lower is better)
Translates to: SILGVDIHKGGG*GSLDLTPHNRI
Trigger: TATTCTATTGTGGGGAGTCAAATCCAGGGAGCCCCAGCCTCCTCCTTTGTGTATGTCAACCCCGAGGATGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS CCA 72 bp CAGTGTGTGCAGATACAAGGAACAGTCCGGGGGCTGTaGACTGTGGTAAGAGAGAGTAAGAGAGCCATGCAT +
Preference number: 6 (lower is better)
Translates to: QCVQIQGTVRGL*TVVRESKRAMH
Trigger: ATGCATGGCTCTCTTACTCTCTCTTACCACAGTCCACAGCCCCCGGACTGTTCCTTGTATCTGCACACACTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS GCA 72 bp TCCGCACAGGCTCTCTCGGTCAATTTTCTGACTCACTaGCAAAGCTCCGCTCACCAAACTCAGGGAAAAATA +
Preference number: 6 (lower is better)
Translates to: SAQALSVNFLTH*QSSAHQTQGKI
Trigger: TATTTTTCCCTGAGTTTGGTGAGCGGAGCTTTGGCAGTGAGTCAGAAAATTGACCGAGAGAGCCTGTGCGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS CCA 72 bp TACATCTACTTGAATTACACAGTGGCCCTCCATGGCTaGCTGTCCCTGGTCTCGAGCTCTTGCATGAATTTC +
Preference number: 6 (lower is better)
Translates to: YIYLNYTVALHG*LSLVSSSCMNF
Trigger: GAAATTCATGCAAGAGCTCGAGACCAGGGACAGCCAGCCATGGAGGGCCACTGTGTAATTCAAGTAGATGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS CAA 90 bp TTACACAGTGGCCCTCCATGGCTGGCTGTCCCTGGTCTCGAGCTCTaGCATGAATTTCATAGAAATTTGATTCCTCAAAATCTACTGGAC +
Preference number: 6 (lower is better)
Translates to: LHSGPPWLAVPGLEL*HEFHRNLIPQNLLD
Trigger: GTCCAGTAGATTTTGAGGAATCAAATTTCTATGAAATTCATGCAAGAGCTCGAGACCAGGGACAGCCAGCCATGGAGGGCCACTGTGTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS CAA 72 bp GGCCCTCCATGGCTGGCTGTCCCTGGTCTCGAGCTCTaGCATGAATTTCATAGAAATTTGATTCCTCAAAAT +
Preference number: 6 (lower is better)
Translates to: GPPWLAVPGLEL*HEFHRNLIPQN
Trigger: ATTTTGAGGAATCAAATTTCTATGAAATTCATGCAAGAGCTCGAGACCAGGGACAGCCAGCCATGGAGGGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11
CDS CCA 72 bp AAATTTGATTCCTCAAAATCTACTGGACCCAACACATaGATTGCTCCACTGCTAGGATCCAGGCCAAAGAGA +
Preference number: 6 (lower is better)
Translates to: KFDSSKSTGPNT*IAPLLGSRPKR
Trigger: TCTCTTTGGCCTGGATCCTAGCAGTGGAGCAATCCATGTGTTGGGTCCAGTAGATTTTGAGGAATCAAATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055935.11