Pregenerated sensors for PCDHGC4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023036Ensembl transcript IDs: ENSMUST00000066140.13, ENSMUST00000195239.2
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TACAGAGCCCCTTGCAAGACCCTATTAACAGGCTGTTTTGTCCACTaGCCCACTCCCAGCAGTATACACTCTCAACTTCCCTTTAGTTTA | + |
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Preference number: 1 (lower is better) Translates to: YRAPCKTLLTGCFVH*PTPSSIHSQLPFSL Trigger: TAAACTAAAGGGAAGTTGAGAGTGTATACTGCTGGGAGTGGGGCAGTGGACAAAACAGCCTGTTAATAGGGTCTTGCAAGGGGCTCTGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000066140.13 ENSMUST00000195239.2 |
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| CDS CCA 90 bp | TGGTGGGCTACCACTGTCCTTCACCACTATGACCAGCTTCTGCGGTaGGAGGTCAGCTGGGATGGGAACAGCAGTCCGTACTTCCCCTGC | + |
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Preference number: 5 (lower is better) Translates to: WWATTVLHHYDQLLR*EVSWDGNSSPYFPC Trigger: GCAGGGGAAGTACGGACTGCTGTTCCCATCCCAGCTGACCTCCCACCGCAGAAGCTGGTCATAGTGGTGAAGGACAGTGGTAGCCCACCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS CCA 90 bp | CAGGTCTGGGTCAGAGGCATTGAGCTGGATGAGCACCATGCCCGCTaGCGCGCTCTCCAACACGCTGATCCTGTAACTGGATTGCTGGAA | + |
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Preference number: 5 (lower is better) Translates to: QVWVRGIELDEHHAR*RALQHADPVTGLLE Trigger: TTCCAGCAATCCAGTTACAGGATCAGCGTGTTGGAGAGCGCGCCAGCGGGCATGGTGCTCATCCAGCTCAATGCCTCTGACCCAGACCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS CCA 90 bp | TTGATGAGCAGGGCTCCGCTGTCCAAATCCACACGGAAGTGTCTTTaGTTCACCTCTCCAGCGACCTGCAGCCTGCGAGCGGATAGACTC | + |
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Preference number: 5 (lower is better) Translates to: LMSRAPLSKSTRKCL*FTSPATCSLRADRL Trigger: GAGTCTATCCGCTCGCAGGCTGCAGGTCGCTGGAGAGGTGAACCAAAGACACTTCCGTGTGGATTTGGACAGCGGAGCCCTGCTCATCAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS CCA 90 bp | GTCGGATTGCTTCTCACGATCCAAGGGCTTCTCCAGAAGAAGCTCTaGGACCAGGCTGCCGTCGCTGCGCTTCTTGACATCCAGGGCAAA | + |
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Preference number: 5 (lower is better) Translates to: VGLLLTIQGLLQKKL*DQAAVAALLDIQGK Trigger: TTTGCCCTGGATGTCAAGAAGCGCAGCGACGGCAGCCTGGTCCCAGAGCTTCTTCTGGAGAAGCCCTTGGATCGTGAGAAGCAATCCGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS CCA 90 bp | ACTGTCCTTCACCACTATGACCAGCTTCTGCGGTGGGAGGTCAGCTaGGATGGGAACAGCAGTCCGTACTTCCCCTGCATAACGGGAGAC | + |
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Preference number: 5 (lower is better) Translates to: TVLHHYDQLLRWEVS*DGNSSPYFPCITGD Trigger: GTCTCCCGTTATGCAGGGGAAGTACGGACTGCTGTTCCCATCCCAGCTGACCTCCCACCGCAGAAGCTGGTCATAGTGGTGAAGGACAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS TCA 90 bp | TCTCCAGAAGAAGCTCTGGGACCAGGCTGCCGTCGCTGCGCTTCTTaGCATCCAGGGCAAAGTGCTCATTGGAGCTTAGTCTGTAGCTGC | + |
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Preference number: 5 (lower is better) Translates to: SPEEALGPGCRRCAS*HPGQSAHWSLVCSC Trigger: GCAGCTACAGACTAAGCTCCAATGAGCACTTTGCCCTGGATGTCAAGAAGCGCAGCGACGGCAGCCTGGTCCCAGAGCTTCTTCTGGAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS TCA 90 bp | CCCAAGCATTGTAACCTGAATCTAAGTCCACAGCCGTCACCTTTGTaGCGAGGTGACCAGCGCCAACTGATGGAGGCAACGCCTGGGGAC | + |
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Preference number: 5 (lower is better) Translates to: PKHCNLNLSPQPSPL*RGDQRQLMEATPGD Trigger: GTCCCCAGGCGTTGCCTCCATCAGTTGGCGCTGGTCACCTCGTCACAAAGGTGACGGCTGTGGACTTAGATTCAGGTTACAATGCTTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS GCA 90 bp | TACAAACTCCAGGGGCACGATGCAGCTGGCACTGAGCCCACACAGTaGCTCTCGATCGATTGGATTTTTGATGAGCAGGGCTCCGCTGTC | + |
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Preference number: 5 (lower is better) Translates to: YKLQGHDAAGTEPTQ*LSIDWIFDEQGSAV Trigger: GACAGCGGAGCCCTGCTCATCAAAAATCCAATCGATCGAGAGGCACTGTGTGGGCTCAGTGCCAGCTGCATCGTGCCCCTGGAGTTTGTA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS CCA 90 bp | GCCAGAGTCTGGGTCAGAGGCTGCAAGGGAGCAAAGCAGGTCCCCTaGGCGATTGTTCTCAGGAACAAACACCTCATGCGACCTCTGAAA | + |
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Preference number: 5 (lower is better) Translates to: ARVWVRGCKGAKQVP*AIVLRNKHLMRPLK Trigger: TTTCAGAGGTCGCATGAGGTGTTTGTTCCTGAGAACAATCGCCCAGGGGACCTGCTTTGCTCCCTTGCAGCCTCTGACCCAGACTCTGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS CCA 90 bp | CAGCAGTCCGTACTTCCCCTGCATAACGGGAGACTGCAAACAGGCTaGGATCTGGGGCCTCCAGGAGCTGATAGGAAACCCAAGCATTGT | + |
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Preference number: 5 (lower is better) Translates to: QQSVLPLHNGRLQTG*DLGPPGADRKPKHC Trigger: ACAATGCTTGGGTTTCCTATCAGCTCCTGGAGGCCCCAGATCCCAGCCTGTTTGCAGTCTCCCGTTATGCAGGGGAAGTACGGACTGCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS TCA 90 bp | GTAGGCTCACATCCCCATTTGACCCCGAGTCAGGGTCCTGCACACTaGTTAGTGCTACCACAGTGCCAGGTTCTGCACTCTCTGGTAGAG | + |
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Preference number: 5 (lower is better) Translates to: VGSHPHLTPSQGPAH*LVLPQCQVLHSLVE Trigger: CTCTACCAGAGAGTGCAGAACCTGGCACTGTGGTAGCACTAATCAGTGTGCAGGACCCTGACTCGGGGTCAAATGGGGATGTGAGCCTAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS CCA 90 bp | CACGATGCAGCTGGCACTGAGCCCACACAGTGCCTCTCGATCGATTaGATTTTTGATGAGCAGGGCTCCGCTGTCCAAATCCACACGGAA | + |
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Preference number: 5 (lower is better) Translates to: HDAAGTEPTQCLSID*IFDEQGSAVQIHTE Trigger: TTCCGTGTGGATTTGGACAGCGGAGCCCTGCTCATCAAAAATCCAATCGATCGAGAGGCACTGTGTGGGCTCAGTGCCAGCTGCATCGTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS CCA 90 bp | TGGCCTCCCACGTCAACAAACTTGATAGGATCTTCTGACCCTAGCTaGATTCGGAGGATCCCATTGGAAGGAGGAAGCCCCTCCCTCCTC | + |
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Preference number: 5 (lower is better) Translates to: WPPTSTNLIGSSDPS*IRRIPLEGGSPSLL Trigger: GAGGAGGGAGGGGCTTCCTCCTTCCAATGGGATCCTCCGAATCCAGCTAGGGTCAGAAGATCCTATCAAGTTTGTTGACGTGGGAGGCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS CCA 90 bp | AGGGAGAACTGGTTCCTGAAGGCAGACTTGAGGGCAAATGGTAAGTaGTCGGGAATCCGTAGGCTCACATCCCCATTTGACCCCGAGTCA | + |
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Preference number: 5 (lower is better) Translates to: RENWFLKADLRANGK*SGIRRLTSPFDPES Trigger: TGACTCGGGGTCAAATGGGGATGTGAGCCTACGGATTCCCGACCACTTACCATTTGCCCTCAAGTCTGCCTTCAGGAACCAGTTCTCCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS TCA 90 bp | CCTTCCCTGGGAGCTGAAGATTCTCGAAGATCGGGGACAACTGGATaGGTGTCTTCCTCTAAGGACACTAGGAGAGTCACAGAGGTAGAG | + |
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Preference number: 5 (lower is better) Translates to: PSLGAEDSRRSGTTG*VSSSKDTRRVTEVE Trigger: CTCTACCTCTGTGACTCTCCTAGTGTCCTTAGAGGAAGACACTCATCCAGTTGTCCCCGATCTTCGAGAATCTTCAGCTCCCAGGGAAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS TCA 90 bp | AAGCTATCACTCCGAGTAGGCGCAGAAGCCAATGGTGTACAGCCATaGGAGTGGCCTCCCACGTCAACAAACTTGATAGGATCTTCTGAC | + |
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Preference number: 5 (lower is better) Translates to: KLSLRVGAEANGVQP*EWPPTSTNLIGSSD Trigger: GTCAGAAGATCCTATCAAGTTTGTTGACGTGGGAGGCCACTCTCATGGCTGTACACCATTGGCTTCTGCGCCTACTCGGAGTGATAGCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS GCA 90 bp | GCGTTGTCGTTCACATCTAGAAGATCCACCCTAAGGCTGCAGTGTTaGTCCATAGCTGGAGAACCCCCATCACGAGCCCTTACATCAAAT | + |
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Preference number: 5 (lower is better) Translates to: ALSFTSRRSTLRLQC*SIAGEPPSRALTSN Trigger: ATTTGATGTAAGGGCTCGTGATGGGGGTTCTCCAGCTATGGAGCAACACTGCAGCCTTAGGGTGGATCTTCTAGATGTGAACGACAACGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS CCA 90 bp | GGTGGGTTATCATTCACATCTGAGATATTGAGGAAAATCGTCCTGTaGGTGCTCAGCGGAGGGTTCCCAGCATCAGAAGCGGTAACCATG | + |
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Preference number: 5 (lower is better) Translates to: GGLSFTSEILRKIVL*VLSGGFPASEAVTM Trigger: CATGGTTACCGCTTCTGATGCTGGGAACCCTCCGCTGAGCACCCACAGGACGATTTTCCTCAATATCTCAGATGTGAATGATAACCCACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS CCA 90 bp | CTTCACCATCATGAAGCTATCACTCCGAGTAGGCGCAGAAGCCAATaGTGTACAGCCATGAGAGTGGCCTCCCACGTCAACAAACTTGAT | + |
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Preference number: 5 (lower is better) Translates to: LHHHEAITPSRRRSQ*CTAMRVASHVNKLD Trigger: ATCAAGTTTGTTGACGTGGGAGGCCACTCTCATGGCTGTACACCATTGGCTTCTGCGCCTACTCGGAGTGATAGCTTCATGATGGTGAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS TCA 90 bp | GGCCTGCACCTCAAACTGCAGTGTCTGTGTTTGTTCATAGTCAAATaGTCTAGTAGCATGAACGGCCCCTGTCTGGGGGTTCAGAGAGAT | + |
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Preference number: 5 (lower is better) Translates to: GLHLKLQCLCLFIVK*SSSMNGPCLGVQRD Trigger: ATCTCTCTGAACCCCCAGACAGGGGCCGTTCATGCTACTAGATCATTTGACTATGAACAAACACAGACACTGCAGTTTGAGGTGCAGGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS CCA 72 bp | AGGGCTCCGCTGTCCAAATCCACACGGAAGTGTCTTTaGTTCACCTCTCCAGCGACCTGCAGCCTGCGAGCG | + |
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Preference number: 6 (lower is better) Translates to: RAPLSKSTRKCL*FTSPATCSLRA Trigger: CGCTCGCAGGCTGCAGGTCGCTGGAGAGGTGAACCAAAGACACTTCCGTGTGGATTTGGACAGCGGAGCCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS CAA 72 bp | CAGGGCTCCGCTGTCCAAATCCACACGGAAGTGTCTTaGGTTCACCTCTCCAGCGACCTGCAGCCTGCGAGC | + |
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Preference number: 6 (lower is better) Translates to: QGSAVQIHTEVS*VHLSSDLQPAS Trigger: GCTCGCAGGCTGCAGGTCGCTGGAGAGGTGAACCAAAGACACTTCCGTGTGGATTTGGACAGCGGAGCCCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS CAA 72 bp | CCAGGCCTGGCCCTGGGGCGTAGCACTGCTGGGGCATaGTCATTGAGGTCTAGAACAAACAGGCGCACTGTC | + |
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Preference number: 6 (lower is better) Translates to: PGLALGRSTAGA*SLRSRTNRRTV Trigger: GACAGTGCGCCTGTTTGTTCTAGACCTCAATGACAATGCCCCAGCAGTGCTACGCCCCAGGGCCAGGCCTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS TCA 72 bp | TGGCCGCACGGGCTCCCCAGCCATAGGTGCACTGGGTaGCTTCACCATCATGAAGCTATCACTCCGAGTAGG | + |
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Preference number: 6 (lower is better) Translates to: WPHGLPSHRCTG*LHHHEAITPSR Trigger: CCTACTCGGAGTGATAGCTTCATGATGGTGAAGTCACCCAGTGCACCTATGGCTGGGGAGCCCGTGCGGCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS CCA 72 bp | GTCAGAGGCATTGAGCTGGATGAGCACCATGCCCGCTaGCGCGCTCTCCAACACGCTGATCCTGTAACTGGA | + |
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Preference number: 6 (lower is better) Translates to: VRGIELDEHHAR*RALQHADPVTG Trigger: TCCAGTTACAGGATCAGCGTGTTGGAGAGCGCGCCAGCGGGCATGGTGCTCATCCAGCTCAATGCCTCTGAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS CAA 90 bp | GGGGTTCCCTCCATCTACAGCAGTCAGCACCAGGCGGTAGTCGGATaGCTTCTCACGATCCAAGGGCTTCTCCAGAAGAAGCTCTGGGAC | + |
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Preference number: 6 (lower is better) Translates to: GVPSIYSSQHQAVVG*LLTIQGLLQKKLWD Trigger: GTCCCAGAGCTTCTTCTGGAGAAGCCCTTGGATCGTGAGAAGCAATCCGACTACCGCCTGGTGCTGACTGCTGTAGATGGAGGGAACCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS CAA 90 bp | CATAAGGAACCAGGCCTGGCCCTGGGGCGTAGCACTGCTGGGGCATaGTCATTGAGGTCTAGAACAAACAGGCGCACTGTCACAGTGCTG | + |
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Preference number: 6 (lower is better) Translates to: HKEPGLALGRSTAGA*SLRSRTNRRTVTVL Trigger: CAGCACTGTGACAGTGCGCCTGTTTGTTCTAGACCTCAATGACAATGCCCCAGCAGTGCTACGCCCCAGGGCCAGGCCTGGTTCCTTATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS TCA 72 bp | GAAGCTCTGGGACCAGGCTGCCGTCGCTGCGCTTCTTaGCATCCAGGGCAAAGTGCTCATTGGAGCTTAGTC | + |
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Preference number: 6 (lower is better) Translates to: EALGPGCRRCAS*HPGQSAHWSLV Trigger: GACTAAGCTCCAATGAGCACTTTGCCCTGGATGTCAAGAAGCGCAGCGACGGCAGCCTGGTCCCAGAGCTTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS GCA 72 bp | CAGGGGCACGATGCAGCTGGCACTGAGCCCACACAGTaGCTCTCGATCGATTGGATTTTTGATGAGCAGGGC | + |
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Preference number: 6 (lower is better) Translates to: QGHDAAGTEPTQ*LSIDWIFDEQG Trigger: GCCCTGCTCATCAAAAATCCAATCGATCGAGAGGCACTGTGTGGGCTCAGTGCCAGCTGCATCGTGCCCCTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS GCA 72 bp | GTCAGCTGGGATGGGAACAGCAGTCCGTACTTCCCCTaGATAACGGGAGACTGCAAACAGGCTGGGATCTGG | + |
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Preference number: 6 (lower is better) Translates to: VSWDGNSSPYFP*ITGDCKQAGIW Trigger: CCAGATCCCAGCCTGTTTGCAGTCTCCCGTTATGCAGGGGAAGTACGGACTGCTGTTCCCATCCCAGCTGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS CCA 72 bp | CACCACTATGACCAGCTTCTGCGGTGGGAGGTCAGCTaGGATGGGAACAGCAGTCCGTACTTCCCCTGCATA | + |
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Preference number: 6 (lower is better) Translates to: HHYDQLLRWEVS*DGNSSPYFPCI Trigger: TATGCAGGGGAAGTACGGACTGCTGTTCCCATCCCAGCTGACCTCCCACCGCAGAAGCTGGTCATAGTGGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS CCA 72 bp | ACCACTGTCCTTCACCACTATGACCAGCTTCTGCGGTaGGAGGTCAGCTGGGATGGGAACAGCAGTCCGTAC | + |
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Preference number: 6 (lower is better) Translates to: TTVLHHYDQLLR*EVSWDGNSSPY Trigger: GTACGGACTGCTGTTCCCATCCCAGCTGACCTCCCACCGCAGAAGCTGGTCATAGTGGTGAAGGACAGTGGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS CCA 72 bp | CGGGTCTCTGGGCTTGAGAGAAACGCCAGTCAGTGTTaGGCGGGGCTTGCTCTAGCCCATAGAGAAGATCAG | + |
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Preference number: 6 (lower is better) Translates to: RVSGLERNASQC*AGLALAHREDQ Trigger: CTGATCTTCTCTATGGGCTAGAGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCCCAGAGACCCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS GCA 72 bp | ACACGGAAGTGTCTTTGGTTCACCTCTCCAGCGACCTaGAGCCTGCGAGCGGATAGACTCTCTGTATCCAGC | + |
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Preference number: 6 (lower is better) Translates to: TRKCLWFTSPAT*SLRADRLSVSS Trigger: GCTGGATACAGAGAGTCTATCCGCTCGCAGGCTGCAGGTCGCTGGAGAGGTGAACCAAAGACACTTCCGTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS CCA 72 bp | CCCTGCATAACGGGAGACTGCAAACAGGCTGGGATCTaGGGCCTCCAGGAGCTGATAGGAAACCCAAGCATT | + |
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Preference number: 6 (lower is better) Translates to: PCITGDCKQAGI*GLQELIGNPSI Trigger: AATGCTTGGGTTTCCTATCAGCTCCTGGAGGCCCCAGATCCCAGCCTGTTTGCAGTCTCCCGTTATGCAGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS CAA 72 bp | AGAAGCTCTGGGACCAGGCTGCCGTCGCTGCGCTTCTaGACATCCAGGGCAAAGTGCTCATTGGAGCTTAGT | + |
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Preference number: 6 (lower is better) Translates to: RSSGTRLPSLRF*TSRAKCSLELS Trigger: ACTAAGCTCCAATGAGCACTTTGCCCTGGATGTCAAGAAGCGCAGCGACGGCAGCCTGGTCCCAGAGCTTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS CAA 90 bp | AAGGGTCCTGCTGTCACGAGGGAGAACTGGTTCCTGAAGGCAGACTaGAGGGCAAATGGTAAGTGGTCGGGAATCCGTAGGCTCACATCC | + |
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Preference number: 6 (lower is better) Translates to: KGPAVTRENWFLKAD*RANGKWSGIRRLTS Trigger: GGATGTGAGCCTACGGATTCCCGACCACTTACCATTTGCCCTCAAGTCTGCCTTCAGGAACCAGTTCTCCCTCGTGACAGCAGGACCCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS TCA 72 bp | CGGTTACAAACTCCAGGGGCACGATGCAGCTGGCACTaGGCCCACACAGTGCCTCTCGATCGATTGGATTTT | + |
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Preference number: 6 (lower is better) Translates to: RLQTPGARCSWH*AHTVPLDRLDF Trigger: AAAATCCAATCGATCGAGAGGCACTGTGTGGGCTCAGTGCCAGCTGCATCGTGCCCCTGGAGTTTGTAACCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS TCA 72 bp | CATCCCCATTTGACCCCGAGTCAGGGTCCTGCACACTaGTTAGTGCTACCACAGTGCCAGGTTCTGCACTCT | + |
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Preference number: 6 (lower is better) Translates to: HPHLTPSQGPAH*LVLPQCQVLHS Trigger: AGAGTGCAGAACCTGGCACTGTGGTAGCACTAATCAGTGTGCAGGACCCTGACTCGGGGTCAAATGGGGATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS CCA 72 bp | GCTGGCACTGAGCCCACACAGTGCCTCTCGATCGATTaGATTTTTGATGAGCAGGGCTCCGCTGTCCAAATC | + |
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Preference number: 6 (lower is better) Translates to: AGTEPTQCLSID*IFDEQGSAVQI Trigger: GATTTGGACAGCGGAGCCCTGCTCATCAAAAATCCAATCGATCGAGAGGCACTGTGTGGGCTCAGTGCCAGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS CCA 72 bp | TCTCGGTCCAAGGGTCCTGCTGTCACGAGGGAGAACTaGTTCCTGAAGGCAGACTTGAGGGCAAATGGTAAG | + |
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Preference number: 6 (lower is better) Translates to: SRSKGPAVTREN*FLKADLRANGK Trigger: CTTACCATTTGCCCTCAAGTCTGCCTTCAGGAACCAGTTCTCCCTCGTGACAGCAGGACCCTTGGACCGAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS CCA 72 bp | CATGAAGCTATCACTCCGAGTAGGCGCAGAAGCCAATaGTGTACAGCCATGAGAGTGGCCTCCCACGTCAAC | + |
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Preference number: 6 (lower is better) Translates to: HEAITPSRRRSQ*CTAMRVASHVN Trigger: GTTGACGTGGGAGGCCACTCTCATGGCTGTACACCATTGGCTTCTGCGCCTACTCGGAGTGATAGCTTCATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS CAA 72 bp | CTGAGCCCACACAGTGCCTCTCGATCGATTGGATTTTaGATGAGCAGGGCTCCGCTGTCCAAATCCACACGG | + |
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Preference number: 6 (lower is better) Translates to: LSPHSASRSIGF*MSRAPLSKSTR Trigger: CCGTGTGGATTTGGACAGCGGAGCCCTGCTCATCAAAAATCCAATCGATCGAGAGGCACTGTGTGGGCTCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS CAA 72 bp | GCTGTCACGAGGGAGAACTGGTTCCTGAAGGCAGACTaGAGGGCAAATGGTAAGTGGTCGGGAATCCGTAGG | + |
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Preference number: 6 (lower is better) Translates to: AVTRENWFLKAD*RANGKWSGIRR Trigger: CCTACGGATTCCCGACCACTTACCATTTGCCCTCAAGTCTGCCTTCAGGAACCAGTTCTCCCTCGTGACAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS CAA 90 bp | CAGCTGGCACTGAGCCCACACAGTGCCTCTCGATCGATTGGATTTTaGATGAGCAGGGCTCCGCTGTCCAAATCCACACGGAAGTGTCTT | + |
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Preference number: 6 (lower is better) Translates to: QLALSPHSASRSIGF*MSRAPLSKSTRKCL Trigger: AAGACACTTCCGTGTGGATTTGGACAGCGGAGCCCTGCTCATCAAAAATCCAATCGATCGAGAGGCACTGTGTGGGCTCAGTGCCAGCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS TCA 72 bp | ATCTTGGGCGACATTCCCTACAAAAGTCCCTTCCTGTaGCTCCTCTGGGACCGGGTAGCGAATCTGCCCATA | + |
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Preference number: 6 (lower is better) Translates to: ILGDIPYKSPFL*LLWDRVANLPI Trigger: TATGGGCAGATTCGCTACCCGGTCCCAGAGGAGTCACAGGAAGGGACTTTTGTAGGGAATGTCGCCCAAGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS TCA 72 bp | TGTAACCTGAATCTAAGTCCACAGCCGTCACCTTTGTaGCGAGGTGACCAGCGCCAACTGATGGAGGCAACG | + |
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Preference number: 6 (lower is better) Translates to: CNLNLSPQPSPL*RGDQRQLMEAT Trigger: CGTTGCCTCCATCAGTTGGCGCTGGTCACCTCGTCACAAAGGTGACGGCTGTGGACTTAGATTCAGGTTACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS CAA 72 bp | TCCATCTACAGCAGTCAGCACCAGGCGGTAGTCGGATaGCTTCTCACGATCCAAGGGCTTCTCCAGAAGAAG | + |
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Preference number: 6 (lower is better) Translates to: SIYSSQHQAVVG*LLTIQGLLQKK Trigger: CTTCTTCTGGAGAAGCCCTTGGATCGTGAGAAGCAATCCGACTACCGCCTGGTGCTGACTGCTGTAGATGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS GCA 72 bp | TTCACATCTAGAAGATCCACCCTAAGGCTGCAGTGTTaGTCCATAGCTGGAGAACCCCCATCACGAGCCCTT | + |
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Preference number: 6 (lower is better) Translates to: FTSRRSTLRLQC*SIAGEPPSRAL Trigger: AAGGGCTCGTGATGGGGGTTCTCCAGCTATGGAGCAACACTGCAGCCTTAGGGTGGATCTTCTAGATGTGAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS GCA 72 bp | TCCACAGGCAGCCCCACGAAGACACTTAGAGAGCAGTaGCACAAAAGAACCAAAGGAGACAAAGCAGATCGC | + |
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Preference number: 6 (lower is better) Translates to: STGSPTKTLREQ*HKRTKGDKADR Trigger: GCGATCTGCTTTGTCTCCTTTGGTTCTTTTGTGGCACTGCTCTCTAAGTGTCTTCGTGGGGCTGCCTGTGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS CCA 72 bp | TGGTTCCTGAAGGCAGACTTGAGGGCAAATGGTAAGTaGTCGGGAATCCGTAGGCTCACATCCCCATTTGAC | + |
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Preference number: 6 (lower is better) Translates to: WFLKADLRANGK*SGIRRLTSPFD Trigger: GTCAAATGGGGATGTGAGCCTACGGATTCCCGACCACTTACCATTTGCCCTCAAGTCTGCCTTCAGGAACCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS CCA 72 bp | ACGTCAACAAACTTGATAGGATCTTCTGACCCTAGCTaGATTCGGAGGATCCCATTGGAAGGAGGAAGCCCC | + |
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Preference number: 6 (lower is better) Translates to: TSTNLIGSSDPS*IRRIPLEGGSP Trigger: GGGGCTTCCTCCTTCCAATGGGATCCTCCGAATCCAGCTAGGGTCAGAAGATCCTATCAAGTTTGTTGACGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS TCA 72 bp | GGAGCTGAAGATTCTCGAAGATCGGGGACAACTGGATaGGTGTCTTCCTCTAAGGACACTAGGAGAGTCACA | + |
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Preference number: 6 (lower is better) Translates to: GAEDSRRSGTTG*VSSSKDTRRVT Trigger: TGTGACTCTCCTAGTGTCCTTAGAGGAAGACACTCATCCAGTTGTCCCCGATCTTCGAGAATCTTCAGCTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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| CDS TCA 72 bp | CTCAAACTGCAGTGTCTGTGTTTGTTCATAGTCAAATaGTCTAGTAGCATGAACGGCCCCTGTCTGGGGGTT | + |
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Preference number: 6 (lower is better) Translates to: LKLQCLCLFIVK*SSSMNGPCLGV Trigger: AACCCCCAGACAGGGGCCGTTCATGCTACTAGATCATTTGACTATGAACAAACACAGACACTGCAGTTTGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066140.13 |
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