Pregenerated sensors for PCDHGB8 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000103081

Ensembl transcript IDs: ENSMUST00000195764.2

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CAA 90 bp	GCGTGTGGACACAGCACAAAACACAGCACGGGCCGCGCAGGCAGATaGAGATTCAAAGGACAGACGGCTGTGTACAGCCCACCGCCCGCT	+
Preference number: 2 (lower is better) Translates to: ACGHSTKHSTGRAGR*RFKGQTAVYSPPPA Trigger: AGCGGGCGGTGGGCTGTACACAGCCGTCTGTCCTTTGAATCTCAATCTGCCTGCGCGGCCCGTGCTGTGTTTTGTGCTGTGTCCACACGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000195764.2
CDS CCA 90 bp	GTTAGGACTGGTTCTCCCCCATCTACTGCGGTTAGGACCAAGAGCTaGGAGCTCTGTTTTTCCCTGTCCAGAGGCTTCTCCAACACTAAT	+
Preference number: 5 (lower is better) Translates to: VRTGSPPSTAVRTKS*ELCFSLSRGFSNTN Trigger: ATTAGTGTTGGAGAAGCCTCTGGACAGGGAAAAACAGAGCTCCCAGCTCTTGGTCCTAACCGCAGTAGATGGGGGAGAACCAGTCCTAAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000195764.2
CDS CAA 72 bp	TCGAGTGTGGGATACAGCACGCGTGGCGCGTTGTCGTaGCGGTCACCCACCAGCACCCGCATGCTCACGTTG	+
Preference number: 6 (lower is better) Translates to: SSVGYSTRGALS*RSPTSTRMLTL Trigger: CAACGTGAGCATGCGGGTGCTGGTGGGTGACCGCAACGACAACGCGCCACGCGTGCTGTATCCCACACTCGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000195764.2
CDS CCA 72 bp	GGTTCTCCCCCATCTACTGCGGTTAGGACCAAGAGCTaGGAGCTCTGTTTTTCCCTGTCCAGAGGCTTCTCC	+
Preference number: 6 (lower is better) Translates to: GSPPSTAVRTKS*ELCFSLSRGFS Trigger: GGAGAAGCCTCTGGACAGGGAAAAACAGAGCTCCCAGCTCTTGGTCCTAACCGCAGTAGATGGGGGAGAACC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000195764.2
CDS CCA 72 bp	GCCACAATCTCTAAGGGCAGGACGCACAGAGGGCTTTaGAAGCAGAGAAACTCTCGGTCTATTCTGTCGCTC	+
Preference number: 6 (lower is better) Translates to: ATISKGRTHRGL*KQRNSRSILSL Trigger: GAGCGACAGAATAGACCGAGAGTTTCTCTGCTTCCAAAGCCCTCTGTGCGTCCTGCCCTTAGAGATTGTGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000195764.2
CDS CAA 72 bp	GGCTTGAGAGAAACGCCAGTCAGTGTTGGGCGGGGCTaGGTGATTAGAAGCAATAGAATCCGAGACTATCTT	+
Preference number: 6 (lower is better) Translates to: GLRETPVSVGRG*VIRSNRIRDYL Trigger: AAGATAGTCTCGGATTCTATTGCTTCTAATCACCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000195764.2
CDS GCA 72 bp	CGAGAATTTCCACTACAACTTTACATTCTGAGGCCATaGCTCCACCGTCCTTGGCCTCTATGTTCATGGTGT	+
Preference number: 6 (lower is better) Translates to: REFPLQLYILRP*LHRPWPLCSWC Trigger: ACACCATGAACATAGAGGCCAAGGACGGTGGAGGCATGGCCTCAGAATGTAAAGTTGTAGTGGAAATTCTCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000195764.2
CDS CAA 90 bp	AGAGGCTTCTCCAACACTAATTCGGGGGCATCCTTTCCTTCAGTGTaGTCCTTTACCACCAGAGAGAAGTGCTCATTCAAACTGAGTTGG	+
Preference number: 6 (lower is better) Translates to: RGFSNTNSGASFPSV*SFTTREKCSFKLSW Trigger: CCAACTCAGTTTGAATGAGCACTTCTCTCTGGTGGTAAAGGACAACACTGAAGGAAAGGATGCCCCCGAATTAGTGTTGGAGAAGCCTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000195764.2
CDS GCA 72 bp	ATACGTTTTGAACAGAGCCACCACTGTCCCCGGTTCTaGATCTTCGGTTATAGAATTGGACACGGAAGTAAA	+
Preference number: 6 (lower is better) Translates to: IRFEQSHHCPRF*IFGYRIGHGSK Trigger: TTTACTTCCGTGTCCAATTCTATAACCGAAGATGCAGAACCGGGGACAGTGGTGGCTCTGTTCAAAACGTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000195764.2
CDS CAA 72 bp	TCCAACACTAATTCGGGGGCATCCTTTCCTTCAGTGTaGTCCTTTACCACCAGAGAGAAGTGCTCATTCAAA	+
Preference number: 6 (lower is better) Translates to: SNTNSGASFPSV*SFTTREKCSFK Trigger: TTTGAATGAGCACTTCTCTCTGGTGGTAAAGGACAACACTGAAGGAAAGGATGCCCCCGAATTAGTGTTGGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000195764.2
CDS CCA 72 bp	TGCATCTATGGCAGATTCCAGGCCAAACCTAGTGCCTaGAATCGCAAGTTCATTGATTTGCAAAACAATGCT	+
Preference number: 6 (lower is better) Translates to: CIYGRFQAKPSA*NRKFIDLQNNA Trigger: AGCATTGTTTTGCAAATCAATGAACTTGCGATTCCAGGCACTAGGTTTGGCCTGGAATCTGCCATAGATGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000195764.2
CDS CCA 72 bp	AGCTTCCGTACAAAGGTCTCGCGGAGGGACCATTTCTaGAGTCAAGGTAAGAAATTGAGAAATTGTCTTTTG	+
Preference number: 6 (lower is better) Translates to: SFRTKVSRRDHF*SQGKKLRNCLL Trigger: CAAAAGACAATTTCTCAATTTCTTACCTTGACTCCAGAAATGGTCCCTCCGCGAGACCTTTGTACGGAAGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000195764.2
CDS CAA 72 bp	ACTCTTCCATTTTCTTCTGAATCTTTATCATACGTTTaGAACAGAGCCACCACTGTCCCCGGTTCTGCATCT	+
Preference number: 6 (lower is better) Translates to: TLPFSSESLSYV*NRATTVPGSAS Trigger: AGATGCAGAACCGGGGACAGTGGTGGCTCTGTTCAAAACGTATGATAAAGATTCAGAAGAAAATGGAAGAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000195764.2
CDS CAA 90 bp	AAGCAACTCACTCTTCCATTTTCTTCTGAATCTTTATCATACGTTTaGAACAGAGCCACCACTGTCCCCGGTTCTGCATCTTCGGTTATA	+
Preference number: 6 (lower is better) Translates to: KQLTLPFSSESLSYV*NRATTVPGSASSVI Trigger: TATAACCGAAGATGCAGAACCGGGGACAGTGGTGGCTCTGTTCAAAACGTATGATAAAGATTCAGAAGAAAATGGAAGAGTGAGTTGCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000195764.2
CDS CAA 90 bp	ACAAAGGTCTCGCGGAGGGACCATTTCTGGAGTCAAGGTAAGAAATaGAGAAATTGTCTTTTGACAATTGGAGGCAACATAGAGATTGTA	+
Preference number: 6 (lower is better) Translates to: TKVSRRDHFWSQGKK*RNCLLTIGGNIEIV Trigger: TACAATCTCTATGTTGCCTCCAATTGTCAAAAGACAATTTCTCAATTTCTTACCTTGACTCCAGAAATGGTCCCTCCGCGAGACCTTTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000195764.2