RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PCDHGB7 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000104063

Ensembl transcript IDs: ENSMUST00000194928.2

Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 72 bp CTTAGCTCACCGGTCACCCCAACAGCCCAGCTACCTTaGTCAAAGAGAGGGACTGAAGGAGTGGGTGGGGTG +
Preference number: 3 (lower is better)
Translates to: LSSPVTPTAQLP*SKRGTEGVGGV
Trigger: CACCCCACCCACTCCTTCAGTCCCTCTCTTTGAGCAAGGTAGCTGGGCTGTTGGGGTGACCGGTGAGCTAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194928.2
3UTR GCA 72 bp CCTTGCAAGACCCTATTAACAGGCTGTTTTGTCCACTaGCCCACTCCCAGCAGTATACACTCTCAACTTCCC +
Preference number: 3 (lower is better)
Translates to: PCKTLLTGCFVH*PTPSSIHSQLP
Trigger: GGGAAGTTGAGAGTGTATACTGCTGGGAGTGGGGCAGTGGACAAAACAGCCTGTTAATAGGGTCTTGCAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194928.2
CDS GCA 90 bp GACCAGGTATCCAGGCTCAGCGGCACGGGGTACCATGTCGAAGAGTaGAGAGCCATCGGGCTCCAGCGTGGGATACAGCACGCGTGGCGC +
Preference number: 5 (lower is better)
Translates to: DQVSRLSGTGYHVEE*RAIGLQRGIQHAWR
Trigger: GCGCCACGCGTGCTGTATCCCACGCTGGAGCCCGATGGCTCTGCACTCTTCGACATGGTACCCCGTGCCGCTGAGCCTGGATACCTGGTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194928.2
CDS GCA 90 bp GACCCCTGGTCTCGCGCTTGTAAAGTCAGCTGGAAGGAGCGAATCTaGTCATGGTCAAAGGCACGCTGCGCGTACACTACTCCACTGTCC +
Preference number: 5 (lower is better)
Translates to: DPWSRACKVSWKERI*SWSKARCAYTTPLS
Trigger: GGACAGTGGAGTAGTGTACGCGCAGCGTGCCTTTGACCATGAGCAGATTCGCTCCTTCCAGCTGACTTTACAAGCGCGAGACCAGGGGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194928.2
CDS TCA 90 bp AGTAGGAGACGAGGCCATTGGATCCCACATCTGGATCCCATGCTTTaGCTTGGGTTATGGAGGTACCGGGCTGGTTGTTTTCTGCTACGT +
Preference number: 5 (lower is better)
Translates to: SRRRGHWIPHLDPML*LGLWRYRAGCFLLR
Trigger: ACGTAGCAGAAAACAACCAGCCCGGTACCTCCATAACCCAAGTCAAAGCATGGGATCCAGATGTGGGATCCAATGGCCTCGTCTCCTACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194928.2
CDS CCA 90 bp GAGACGAGGCCATTGGATCCCACATCTGGATCCCATGCTTTGACTTaGGTTATGGAGGTACCGGGCTGGTTGTTTTCTGCTACGTTTATC +
Preference number: 5 (lower is better)
Translates to: ETRPLDPTSGSHALT*VMEVPGWLFSATFI
Trigger: GATAAACGTAGCAGAAAACAACCAGCCCGGTACCTCCATAACCCAAGTCAAAGCATGGGATCCAGATGTGGGATCCAATGGCCTCGTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194928.2
CDS CCA 90 bp GACTGGCGAGTTACAATATCTCCTGTTATGGGATCCAGAGAGAACTaGGCTTTGTTAGCCACACCTAGGAAGGAATATGTAAATTCTGCA +
Preference number: 5 (lower is better)
Translates to: DWRVTISPVMGSREN*ALLATPRKEYVNSA
Trigger: TGCAGAATTTACATATTCCTTCCTAGGTGTGGCTAACAAAGCCCAGTTCTCTCTGGATCCCATAACAGGAGATATTGTAACTCGCCAGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194928.2
CDS CCA 90 bp TCCACATCAATCGTATATTGCTCTACTTCTTCAAAATCCAACGACTaGCGAGTTACAATATCTCCTGTTATGGGATCCAGAGAGAACTGG +
Preference number: 5 (lower is better)
Translates to: STSIVYCSTSSKSND*RVTISPVMGSRENW
Trigger: CCAGTTCTCTCTGGATCCCATAACAGGAGATATTGTAACTCGCCAGTCGTTGGATTTTGAAGAAGTAGAGCAATATACGATTGATGTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194928.2
CDS GCA 72 bp TCCAGGCTCAGCGGCACGGGGTACCATGTCGAAGAGTaGAGAGCCATCGGGCTCCAGCGTGGGATACAGCAC +
Preference number: 6 (lower is better)
Translates to: SRLSGTGYHVEE*RAIGLQRGIQH
Trigger: GTGCTGTATCCCACGCTGGAGCCCGATGGCTCTGCACTCTTCGACATGGTACCCCGTGCCGCTGAGCCTGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194928.2
CDS GCA 72 bp TGGAAGGAGCGAATCTGCTCATGGTCAAAGGCACGCTaGGCGTACACTACTCCACTGTCCTGGTTCACGGAC +
Preference number: 6 (lower is better)
Translates to: WKERICSWSKAR*AYTTPLSWFTD
Trigger: GTCCGTGAACCAGGACAGTGGAGTAGTGTACGCGCAGCGTGCCTTTGACCATGAGCAGATTCGCTCCTTCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194928.2
CDS GCA 72 bp GGAGACGAGGCCATTGGATCCCACATCTGGATCCCATaGTTTGACTTGGGTTATGGAGGTACCGGGCTGGTT +
Preference number: 6 (lower is better)
Translates to: GDEAIGSHIWIP*FDLGYGGTGLV
Trigger: AACCAGCCCGGTACCTCCATAACCCAAGTCAAAGCATGGGATCCAGATGTGGGATCCAATGGCCTCGTCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194928.2
CDS CAA 72 bp GGCTTGAGAGAAACGCCAGTCAGTGTTGGGCGGGGCTaGCTGGTTAAAGGTCTTCTCGTCTGCTTCAACACC +
Preference number: 6 (lower is better)
Translates to: GLRETPVSVGRG*LVKGLLVCFNT
Trigger: GGTGTTGAAGCAGACGAGAAGACCTTTAACCAGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194928.2
CDS GCA 72 bp TCTCGCGCTTGTAAAGTCAGCTGGAAGGAGCGAATCTaGTCATGGTCAAAGGCACGCTGCGCGTACACTACT +
Preference number: 6 (lower is better)
Translates to: SRACKVSWKERI*SWSKARCAYTT
Trigger: AGTAGTGTACGCGCAGCGTGCCTTTGACCATGAGCAGATTCGCTCCTTCCAGCTGACTTTACAAGCGCGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194928.2
CDS CCA 72 bp CCTCGTCTTGATCCATTGCCTTTAGCCTTAGGACTGTaGTTCCTGGAGGCAAGTCTTCTGGAAGGCGGACTC +
Preference number: 6 (lower is better)
Translates to: PRLDPLPLALGL*FLEASLLEGGL
Trigger: GAGTCCGCCTTCCAGAAGACTTGCCTCCAGGAACCACAGTCCTAAGGCTAAAGGCAATGGATCAAGACGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194928.2
CDS TCA 72 bp CTTCTGCGTTTTCCCCAGAATCTCGATCCCGTACCTTaGAGAGGGCCACAACAGTTCCGGAAGGAGAATCCT +
Preference number: 6 (lower is better)
Translates to: LLRFPQNLDPVP*RGPQQFRKENP
Trigger: AGGATTCTCCTTCCGGAACTGTTGTGGCCCTCTTCAAGGTACGGGATCGAGATTCTGGGGAAAACGCAGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194928.2
CDS TCA 72 bp CGAGGCCATTGGATCCCACATCTGGATCCCATGCTTTaGCTTGGGTTATGGAGGTACCGGGCTGGTTGTTTT +
Preference number: 6 (lower is better)
Translates to: RGHWIPHLDPML*LGLWRYRAGCF
Trigger: AAAACAACCAGCCCGGTACCTCCATAACCCAAGTCAAAGCATGGGATCCAGATGTGGGATCCAATGGCCTCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194928.2
CDS CAA 72 bp ACTTCTGCGTTTTCCCCAGAATCTCGATCCCGTACCTaGAAGAGGGCCACAACAGTTCCGGAAGGAGAATCC +
Preference number: 6 (lower is better)
Translates to: TSAFSPESRSRT*KRATTVPEGES
Trigger: GGATTCTCCTTCCGGAACTGTTGTGGCCCTCTTCAAGGTACGGGATCGAGATTCTGGGGAAAACGCAGAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194928.2
CDS CAA 72 bp GCCATTGGATCCCACATCTGGATCCCATGCTTTGACTaGGGTTATGGAGGTACCGGGCTGGTTGTTTTCTGC +
Preference number: 6 (lower is better)
Translates to: AIGSHIWIPCFD*GYGGTGLVVFC
Trigger: GCAGAAAACAACCAGCCCGGTACCTCCATAACCCAAGTCAAAGCATGGGATCCAGATGTGGGATCCAATGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194928.2
CDS CAA 72 bp ACGAGGCCATTGGATCCCACATCTGGATCCCATGCTTaGACTTGGGTTATGGAGGTACCGGGCTGGTTGTTT +
Preference number: 6 (lower is better)
Translates to: TRPLDPTSGSHA*TWVMEVPGWLF
Trigger: AAACAACCAGCCCGGTACCTCCATAACCCAAGTCAAAGCATGGGATCCAGATGTGGGATCCAATGGCCTCGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194928.2
CDS CAA 90 bp CTGCACATGACTTCTGCGTTTTCCCCAGAATCTCGATCCCGTACCTaGAAGAGGGCCACAACAGTTCCGGAAGGAGAATCCTCCGAAATC +
Preference number: 6 (lower is better)
Translates to: LHMTSAFSPESRSRT*KRATTVPEGESSEI
Trigger: GATTTCGGAGGATTCTCCTTCCGGAACTGTTGTGGCCCTCTTCAAGGTACGGGATCGAGATTCTGGGGAAAACGCAGAAGTCATGTGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194928.2
CDS CAA 90 bp GGAGACGAGGCCATTGGATCCCACATCTGGATCCCATGCTTTGACTaGGGTTATGGAGGTACCGGGCTGGTTGTTTTCTGCTACGTTTAT +
Preference number: 6 (lower is better)
Translates to: GDEAIGSHIWIPCFD*GYGGTGLVVFCYVY
Trigger: ATAAACGTAGCAGAAAACAACCAGCCCGGTACCTCCATAACCCAAGTCAAAGCATGGGATCCAGATGTGGGATCCAATGGCCTCGTCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194928.2
CDS GCA 72 bp CAGCTTCCAACTGCAGCTCACACTTTCTCCTCCCTTTaGATATTTGCTCGCGATCTATGCGGTCCTTCACCA +
Preference number: 6 (lower is better)
Translates to: QLPTAAHTFSSL*IFARDLCGPSP
Trigger: TGGTGAAGGACCGCATAGATCGCGAGCAAATATGCAAAGGGAGGAGAAAGTGTGAGCTGCAGTTGGAAGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194928.2
CDS CCA 72 bp CCATTGGATCCCACATCTGGATCCCATGCTTTGACTTaGGTTATGGAGGTACCGGGCTGGTTGTTTTCTGCT +
Preference number: 6 (lower is better)
Translates to: PLDPTSGSHALT*VMEVPGWLFSA
Trigger: AGCAGAAAACAACCAGCCCGGTACCTCCATAACCCAAGTCAAAGCATGGGATCCAGATGTGGGATCCAATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194928.2
CDS GCA 72 bp GACTTGGGTTATGGAGGTACCGGGCTGGTTGTTTTCTaGTACGTTTATCAGGTAGGCCTGCTGTTGGAAAAC +
Preference number: 6 (lower is better)
Translates to: DLGYGGTGLVVF*YVYQVGLLLEN
Trigger: GTTTTCCAACAGCAGGCCTACCTGATAAACGTAGCAGAAAACAACCAGCCCGGTACCTCCATAACCCAAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194928.2
CDS CAA 90 bp CCAGGAGTTAAAATACTAGCCAACAGTGCCGAGGAGCTATCTTTGTaGAGAATATCTTGTGCGGCTGGACAATCTCCAACGGATGAGAAG +
Preference number: 6 (lower is better)
Translates to: PGVKILANSAEELSL*RISCAAGQSPTDEK
Trigger: CTTCTCATCCGTTGGAGATTGTCCAGCCGCACAAGATATTCTCAACAAAGATAGCTCCTCGGCACTGTTGGCTAGTATTTTAACTCCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194928.2
CDS CAA 90 bp ACACCAGGAGTTAAAATACTAGCCAACAGTGCCGAGGAGCTATCTTaGTTGAGAATATCTTGTGCGGCTGGACAATCTCCAACGGATGAG +
Preference number: 6 (lower is better)
Translates to: TPGVKILANSAEELS*LRISCAAGQSPTDE
Trigger: CTCATCCGTTGGAGATTGTCCAGCCGCACAAGATATTCTCAACAAAGATAGCTCCTCGGCACTGTTGGCTAGTATTTTAACTCCTGGTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194928.2
CDS CAA 72 bp AAAATACTAGCCAACAGTGCCGAGGAGCTATCTTTGTaGAGAATATCTTGTGCGGCTGGACAATCTCCAACG +
Preference number: 6 (lower is better)
Translates to: KILANSAEELSL*RISCAAGQSPT
Trigger: CGTTGGAGATTGTCCAGCCGCACAAGATATTCTCAACAAAGATAGCTCCTCGGCACTGTTGGCTAGTATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194928.2
CDS CAA 72 bp GTTAAAATACTAGCCAACAGTGCCGAGGAGCTATCTTaGTTGAGAATATCTTGTGCGGCTGGACAATCTCCA +
Preference number: 6 (lower is better)
Translates to: VKILANSAEELS*LRISCAAGQSP
Trigger: TGGAGATTGTCCAGCCGCACAAGATATTCTCAACAAAGATAGCTCCTCGGCACTGTTGGCTAGTATTTTAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194928.2
CDS CAA 90 bp TTAGAGAATTCATACCAATGTCAAGATCTTTTGCTGACTCCAGAATaGTTCTCGCCCCTGGGCTGTCGGATTCACTTATCTCTAGGTTTA +
Preference number: 6 (lower is better)
Translates to: LENSYQCQDLLLTPE*FSPLGCRIHLSLGL
Trigger: TAAACCTAGAGATAAGTGAATCCGACAGCCCAGGGGCGAGAACAATTCTGGAGTCAGCAAAAGATCTTGACATTGGTATGAATTCTCTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194928.2
CDS CAA 90 bp CGAGTTACAATATCTCCTGTTATGGGATCCAGAGAGAACTGGGCTTaGTTAGCCACACCTAGGAAGGAATATGTAAATTCTGCATTGATG +
Preference number: 6 (lower is better)
Translates to: RVTISPVMGSRENWA*LATPRKEYVNSALM
Trigger: CATCAATGCAGAATTTACATATTCCTTCCTAGGTGTGGCTAACAAAGCCCAGTTCTCTCTGGATCCCATAACAGGAGATATTGTAACTCG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194928.2
CDS CAA 72 bp ATTTACTTAGAGAATTCATACCAATGTCAAGATCTTTaGCTGACTCCAGAATTGTTCTCGCCCCTGGGCTGT +
Preference number: 6 (lower is better)
Translates to: IYLENSYQCQDL*LTPELFSPLGC
Trigger: ACAGCCCAGGGGCGAGAACAATTCTGGAGTCAGCAAAAGATCTTGACATTGGTATGAATTCTCTAAGTAAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194928.2
CDS CAA 72 bp ATATCTCCTGTTATGGGATCCAGAGAGAACTGGGCTTaGTTAGCCACACCTAGGAAGGAATATGTAAATTCT +
Preference number: 6 (lower is better)
Translates to: ISPVMGSRENWA*LATPRKEYVNS
Trigger: AGAATTTACATATTCCTTCCTAGGTGTGGCTAACAAAGCCCAGTTCTCTCTGGATCCCATAACAGGAGATAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194928.2
CDS CCA 72 bp ATCGTATATTGCTCTACTTCTTCAAAATCCAACGACTaGCGAGTTACAATATCTCCTGTTATGGGATCCAGA +
Preference number: 6 (lower is better)
Translates to: IVYCSTSSKSND*RVTISPVMGSR
Trigger: TCTGGATCCCATAACAGGAGATATTGTAACTCGCCAGTCGTTGGATTTTGAAGAAGTAGAGCAATATACGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194928.2