Pregenerated sensors for PCDHGB7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000104063Ensembl transcript IDs: ENSMUST00000194928.2
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR GCA 72 bp | CTTAGCTCACCGGTCACCCCAACAGCCCAGCTACCTTaGTCAAAGAGAGGGACTGAAGGAGTGGGTGGGGTG | + |
Preference number: 3 (lower is better) Translates to: LSSPVTPTAQLP*SKRGTEGVGGV Trigger: CACCCCACCCACTCCTTCAGTCCCTCTCTTTGAGCAAGGTAGCTGGGCTGTTGGGGTGACCGGTGAGCTAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194928.2 |
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3UTR GCA 72 bp | CCTTGCAAGACCCTATTAACAGGCTGTTTTGTCCACTaGCCCACTCCCAGCAGTATACACTCTCAACTTCCC | + |
Preference number: 3 (lower is better) Translates to: PCKTLLTGCFVH*PTPSSIHSQLP Trigger: GGGAAGTTGAGAGTGTATACTGCTGGGAGTGGGGCAGTGGACAAAACAGCCTGTTAATAGGGTCTTGCAAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194928.2 |
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CDS GCA 90 bp | GACCAGGTATCCAGGCTCAGCGGCACGGGGTACCATGTCGAAGAGTaGAGAGCCATCGGGCTCCAGCGTGGGATACAGCACGCGTGGCGC | + |
Preference number: 5 (lower is better) Translates to: DQVSRLSGTGYHVEE*RAIGLQRGIQHAWR Trigger: GCGCCACGCGTGCTGTATCCCACGCTGGAGCCCGATGGCTCTGCACTCTTCGACATGGTACCCCGTGCCGCTGAGCCTGGATACCTGGTC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194928.2 |
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CDS GCA 90 bp | GACCCCTGGTCTCGCGCTTGTAAAGTCAGCTGGAAGGAGCGAATCTaGTCATGGTCAAAGGCACGCTGCGCGTACACTACTCCACTGTCC | + |
Preference number: 5 (lower is better) Translates to: DPWSRACKVSWKERI*SWSKARCAYTTPLS Trigger: GGACAGTGGAGTAGTGTACGCGCAGCGTGCCTTTGACCATGAGCAGATTCGCTCCTTCCAGCTGACTTTACAAGCGCGAGACCAGGGGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194928.2 |
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CDS TCA 90 bp | AGTAGGAGACGAGGCCATTGGATCCCACATCTGGATCCCATGCTTTaGCTTGGGTTATGGAGGTACCGGGCTGGTTGTTTTCTGCTACGT | + |
Preference number: 5 (lower is better) Translates to: SRRRGHWIPHLDPML*LGLWRYRAGCFLLR Trigger: ACGTAGCAGAAAACAACCAGCCCGGTACCTCCATAACCCAAGTCAAAGCATGGGATCCAGATGTGGGATCCAATGGCCTCGTCTCCTACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194928.2 |
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CDS CCA 90 bp | GAGACGAGGCCATTGGATCCCACATCTGGATCCCATGCTTTGACTTaGGTTATGGAGGTACCGGGCTGGTTGTTTTCTGCTACGTTTATC | + |
Preference number: 5 (lower is better) Translates to: ETRPLDPTSGSHALT*VMEVPGWLFSATFI Trigger: GATAAACGTAGCAGAAAACAACCAGCCCGGTACCTCCATAACCCAAGTCAAAGCATGGGATCCAGATGTGGGATCCAATGGCCTCGTCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194928.2 |
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CDS CCA 90 bp | GACTGGCGAGTTACAATATCTCCTGTTATGGGATCCAGAGAGAACTaGGCTTTGTTAGCCACACCTAGGAAGGAATATGTAAATTCTGCA | + |
Preference number: 5 (lower is better) Translates to: DWRVTISPVMGSREN*ALLATPRKEYVNSA Trigger: TGCAGAATTTACATATTCCTTCCTAGGTGTGGCTAACAAAGCCCAGTTCTCTCTGGATCCCATAACAGGAGATATTGTAACTCGCCAGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194928.2 |
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CDS CCA 90 bp | TCCACATCAATCGTATATTGCTCTACTTCTTCAAAATCCAACGACTaGCGAGTTACAATATCTCCTGTTATGGGATCCAGAGAGAACTGG | + |
Preference number: 5 (lower is better) Translates to: STSIVYCSTSSKSND*RVTISPVMGSRENW Trigger: CCAGTTCTCTCTGGATCCCATAACAGGAGATATTGTAACTCGCCAGTCGTTGGATTTTGAAGAAGTAGAGCAATATACGATTGATGTGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194928.2 |
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CDS GCA 72 bp | TCCAGGCTCAGCGGCACGGGGTACCATGTCGAAGAGTaGAGAGCCATCGGGCTCCAGCGTGGGATACAGCAC | + |
Preference number: 6 (lower is better) Translates to: SRLSGTGYHVEE*RAIGLQRGIQH Trigger: GTGCTGTATCCCACGCTGGAGCCCGATGGCTCTGCACTCTTCGACATGGTACCCCGTGCCGCTGAGCCTGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194928.2 |
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CDS GCA 72 bp | TGGAAGGAGCGAATCTGCTCATGGTCAAAGGCACGCTaGGCGTACACTACTCCACTGTCCTGGTTCACGGAC | + |
Preference number: 6 (lower is better) Translates to: WKERICSWSKAR*AYTTPLSWFTD Trigger: GTCCGTGAACCAGGACAGTGGAGTAGTGTACGCGCAGCGTGCCTTTGACCATGAGCAGATTCGCTCCTTCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194928.2 |
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CDS GCA 72 bp | GGAGACGAGGCCATTGGATCCCACATCTGGATCCCATaGTTTGACTTGGGTTATGGAGGTACCGGGCTGGTT | + |
Preference number: 6 (lower is better) Translates to: GDEAIGSHIWIP*FDLGYGGTGLV Trigger: AACCAGCCCGGTACCTCCATAACCCAAGTCAAAGCATGGGATCCAGATGTGGGATCCAATGGCCTCGTCTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194928.2 |
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CDS CAA 72 bp | GGCTTGAGAGAAACGCCAGTCAGTGTTGGGCGGGGCTaGCTGGTTAAAGGTCTTCTCGTCTGCTTCAACACC | + |
Preference number: 6 (lower is better) Translates to: GLRETPVSVGRG*LVKGLLVCFNT Trigger: GGTGTTGAAGCAGACGAGAAGACCTTTAACCAGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194928.2 |
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CDS GCA 72 bp | TCTCGCGCTTGTAAAGTCAGCTGGAAGGAGCGAATCTaGTCATGGTCAAAGGCACGCTGCGCGTACACTACT | + |
Preference number: 6 (lower is better) Translates to: SRACKVSWKERI*SWSKARCAYTT Trigger: AGTAGTGTACGCGCAGCGTGCCTTTGACCATGAGCAGATTCGCTCCTTCCAGCTGACTTTACAAGCGCGAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194928.2 |
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CDS CCA 72 bp | CCTCGTCTTGATCCATTGCCTTTAGCCTTAGGACTGTaGTTCCTGGAGGCAAGTCTTCTGGAAGGCGGACTC | + |
Preference number: 6 (lower is better) Translates to: PRLDPLPLALGL*FLEASLLEGGL Trigger: GAGTCCGCCTTCCAGAAGACTTGCCTCCAGGAACCACAGTCCTAAGGCTAAAGGCAATGGATCAAGACGAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194928.2 |
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CDS TCA 72 bp | CTTCTGCGTTTTCCCCAGAATCTCGATCCCGTACCTTaGAGAGGGCCACAACAGTTCCGGAAGGAGAATCCT | + |
Preference number: 6 (lower is better) Translates to: LLRFPQNLDPVP*RGPQQFRKENP Trigger: AGGATTCTCCTTCCGGAACTGTTGTGGCCCTCTTCAAGGTACGGGATCGAGATTCTGGGGAAAACGCAGAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194928.2 |
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CDS TCA 72 bp | CGAGGCCATTGGATCCCACATCTGGATCCCATGCTTTaGCTTGGGTTATGGAGGTACCGGGCTGGTTGTTTT | + |
Preference number: 6 (lower is better) Translates to: RGHWIPHLDPML*LGLWRYRAGCF Trigger: AAAACAACCAGCCCGGTACCTCCATAACCCAAGTCAAAGCATGGGATCCAGATGTGGGATCCAATGGCCTCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194928.2 |
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CDS CAA 72 bp | ACTTCTGCGTTTTCCCCAGAATCTCGATCCCGTACCTaGAAGAGGGCCACAACAGTTCCGGAAGGAGAATCC | + |
Preference number: 6 (lower is better) Translates to: TSAFSPESRSRT*KRATTVPEGES Trigger: GGATTCTCCTTCCGGAACTGTTGTGGCCCTCTTCAAGGTACGGGATCGAGATTCTGGGGAAAACGCAGAAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194928.2 |
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CDS CAA 72 bp | GCCATTGGATCCCACATCTGGATCCCATGCTTTGACTaGGGTTATGGAGGTACCGGGCTGGTTGTTTTCTGC | + |
Preference number: 6 (lower is better) Translates to: AIGSHIWIPCFD*GYGGTGLVVFC Trigger: GCAGAAAACAACCAGCCCGGTACCTCCATAACCCAAGTCAAAGCATGGGATCCAGATGTGGGATCCAATGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194928.2 |
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CDS CAA 72 bp | ACGAGGCCATTGGATCCCACATCTGGATCCCATGCTTaGACTTGGGTTATGGAGGTACCGGGCTGGTTGTTT | + |
Preference number: 6 (lower is better) Translates to: TRPLDPTSGSHA*TWVMEVPGWLF Trigger: AAACAACCAGCCCGGTACCTCCATAACCCAAGTCAAAGCATGGGATCCAGATGTGGGATCCAATGGCCTCGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194928.2 |
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CDS CAA 90 bp | CTGCACATGACTTCTGCGTTTTCCCCAGAATCTCGATCCCGTACCTaGAAGAGGGCCACAACAGTTCCGGAAGGAGAATCCTCCGAAATC | + |
Preference number: 6 (lower is better) Translates to: LHMTSAFSPESRSRT*KRATTVPEGESSEI Trigger: GATTTCGGAGGATTCTCCTTCCGGAACTGTTGTGGCCCTCTTCAAGGTACGGGATCGAGATTCTGGGGAAAACGCAGAAGTCATGTGCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194928.2 |
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CDS CAA 90 bp | GGAGACGAGGCCATTGGATCCCACATCTGGATCCCATGCTTTGACTaGGGTTATGGAGGTACCGGGCTGGTTGTTTTCTGCTACGTTTAT | + |
Preference number: 6 (lower is better) Translates to: GDEAIGSHIWIPCFD*GYGGTGLVVFCYVY Trigger: ATAAACGTAGCAGAAAACAACCAGCCCGGTACCTCCATAACCCAAGTCAAAGCATGGGATCCAGATGTGGGATCCAATGGCCTCGTCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194928.2 |
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CDS GCA 72 bp | CAGCTTCCAACTGCAGCTCACACTTTCTCCTCCCTTTaGATATTTGCTCGCGATCTATGCGGTCCTTCACCA | + |
Preference number: 6 (lower is better) Translates to: QLPTAAHTFSSL*IFARDLCGPSP Trigger: TGGTGAAGGACCGCATAGATCGCGAGCAAATATGCAAAGGGAGGAGAAAGTGTGAGCTGCAGTTGGAAGCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194928.2 |
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CDS CCA 72 bp | CCATTGGATCCCACATCTGGATCCCATGCTTTGACTTaGGTTATGGAGGTACCGGGCTGGTTGTTTTCTGCT | + |
Preference number: 6 (lower is better) Translates to: PLDPTSGSHALT*VMEVPGWLFSA Trigger: AGCAGAAAACAACCAGCCCGGTACCTCCATAACCCAAGTCAAAGCATGGGATCCAGATGTGGGATCCAATGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194928.2 |
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CDS GCA 72 bp | GACTTGGGTTATGGAGGTACCGGGCTGGTTGTTTTCTaGTACGTTTATCAGGTAGGCCTGCTGTTGGAAAAC | + |
Preference number: 6 (lower is better) Translates to: DLGYGGTGLVVF*YVYQVGLLLEN Trigger: GTTTTCCAACAGCAGGCCTACCTGATAAACGTAGCAGAAAACAACCAGCCCGGTACCTCCATAACCCAAGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194928.2 |
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CDS CAA 90 bp | CCAGGAGTTAAAATACTAGCCAACAGTGCCGAGGAGCTATCTTTGTaGAGAATATCTTGTGCGGCTGGACAATCTCCAACGGATGAGAAG | + |
Preference number: 6 (lower is better) Translates to: PGVKILANSAEELSL*RISCAAGQSPTDEK Trigger: CTTCTCATCCGTTGGAGATTGTCCAGCCGCACAAGATATTCTCAACAAAGATAGCTCCTCGGCACTGTTGGCTAGTATTTTAACTCCTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194928.2 |
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CDS CAA 90 bp | ACACCAGGAGTTAAAATACTAGCCAACAGTGCCGAGGAGCTATCTTaGTTGAGAATATCTTGTGCGGCTGGACAATCTCCAACGGATGAG | + |
Preference number: 6 (lower is better) Translates to: TPGVKILANSAEELS*LRISCAAGQSPTDE Trigger: CTCATCCGTTGGAGATTGTCCAGCCGCACAAGATATTCTCAACAAAGATAGCTCCTCGGCACTGTTGGCTAGTATTTTAACTCCTGGTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194928.2 |
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CDS CAA 72 bp | AAAATACTAGCCAACAGTGCCGAGGAGCTATCTTTGTaGAGAATATCTTGTGCGGCTGGACAATCTCCAACG | + |
Preference number: 6 (lower is better) Translates to: KILANSAEELSL*RISCAAGQSPT Trigger: CGTTGGAGATTGTCCAGCCGCACAAGATATTCTCAACAAAGATAGCTCCTCGGCACTGTTGGCTAGTATTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194928.2 |
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CDS CAA 72 bp | GTTAAAATACTAGCCAACAGTGCCGAGGAGCTATCTTaGTTGAGAATATCTTGTGCGGCTGGACAATCTCCA | + |
Preference number: 6 (lower is better) Translates to: VKILANSAEELS*LRISCAAGQSP Trigger: TGGAGATTGTCCAGCCGCACAAGATATTCTCAACAAAGATAGCTCCTCGGCACTGTTGGCTAGTATTTTAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194928.2 |
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CDS CAA 90 bp | TTAGAGAATTCATACCAATGTCAAGATCTTTTGCTGACTCCAGAATaGTTCTCGCCCCTGGGCTGTCGGATTCACTTATCTCTAGGTTTA | + |
Preference number: 6 (lower is better) Translates to: LENSYQCQDLLLTPE*FSPLGCRIHLSLGL Trigger: TAAACCTAGAGATAAGTGAATCCGACAGCCCAGGGGCGAGAACAATTCTGGAGTCAGCAAAAGATCTTGACATTGGTATGAATTCTCTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194928.2 |
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CDS CAA 90 bp | CGAGTTACAATATCTCCTGTTATGGGATCCAGAGAGAACTGGGCTTaGTTAGCCACACCTAGGAAGGAATATGTAAATTCTGCATTGATG | + |
Preference number: 6 (lower is better) Translates to: RVTISPVMGSRENWA*LATPRKEYVNSALM Trigger: CATCAATGCAGAATTTACATATTCCTTCCTAGGTGTGGCTAACAAAGCCCAGTTCTCTCTGGATCCCATAACAGGAGATATTGTAACTCG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194928.2 |
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CDS CAA 72 bp | ATTTACTTAGAGAATTCATACCAATGTCAAGATCTTTaGCTGACTCCAGAATTGTTCTCGCCCCTGGGCTGT | + |
Preference number: 6 (lower is better) Translates to: IYLENSYQCQDL*LTPELFSPLGC Trigger: ACAGCCCAGGGGCGAGAACAATTCTGGAGTCAGCAAAAGATCTTGACATTGGTATGAATTCTCTAAGTAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194928.2 |
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CDS CAA 72 bp | ATATCTCCTGTTATGGGATCCAGAGAGAACTGGGCTTaGTTAGCCACACCTAGGAAGGAATATGTAAATTCT | + |
Preference number: 6 (lower is better) Translates to: ISPVMGSRENWA*LATPRKEYVNS Trigger: AGAATTTACATATTCCTTCCTAGGTGTGGCTAACAAAGCCCAGTTCTCTCTGGATCCCATAACAGGAGATAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194928.2 |
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CDS CCA 72 bp | ATCGTATATTGCTCTACTTCTTCAAAATCCAACGACTaGCGAGTTACAATATCTCCTGTTATGGGATCCAGA | + |
Preference number: 6 (lower is better) Translates to: IVYCSTSSKSND*RVTISPVMGSR Trigger: TCTGGATCCCATAACAGGAGATATTGTAACTCGCCAGTCGTTGGATTTTGAAGAAGTAGAGCAATATACGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194928.2 |