Pregenerated sensors for PCDHGB6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000103088Ensembl transcript IDs: ENSMUST00000003599.9
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CGCTCGTGCCGGGTCTCTGGGCTTGAGAGAAACGCCAGTCAGTGTTaGGCGGGGCTTGCGGTGTTAGAGTCTCAGGATGTGTTGTCAAAT | + |
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Preference number: 5 (lower is better) Translates to: RSCRVSGLERNASQC*AGLAVLESQDVLSN Trigger: ATTTGACAACACATCCTGAGACTCTAACACCGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCCCAGAGACCCGGCACGAGCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003599.9 |
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| CDS TCA 90 bp | TGCGGTGTTAGAGTCTCAGGATGTGTTGTCAAATCATCTCCAAGGTaGAGCGGAATTAAGGCCCCAGGAGAACTACCGGAAACGATCTCT | + |
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Preference number: 5 (lower is better) Translates to: CGVRVSGCVVKSSPR*SGIKAPGELPETIS Trigger: AGAGATCGTTTCCGGTAGTTCTCCTGGGGCCTTAATTCCGCTTCACCTTGGAGATGATTTGACAACACATCCTGAGACTCTAACACCGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003599.9 |
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| CDS TCA 90 bp | TGGTGTACCTCTCTATGTCTTCAAAATCCAGAGACTGGTTATTCTTaGTCACGCCTGTTTTCTCATCTAGTGAGAACACGTGTCTTGTGC | + |
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Preference number: 5 (lower is better) Translates to: WCTSLCLQNPETGYS*SRLFSHLVRTRVLC Trigger: GCACAAGACACGTGTTCTCACTAGATGAGAAAACAGGCGTGATCAAGAATAACCAGTCTCTGGATTTTGAAGACATAGAGAGGTACACCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003599.9 |
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| CDS CCA 90 bp | TCTACTTCCATGGTGTACCTCTCTATGTCTTCAAAATCCAGAGACTaGTTATTCTTGATCACGCCTGTTTTCTCATCTAGTGAGAACACG | + |
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Preference number: 5 (lower is better) Translates to: STSMVYLSMSSKSRD*LFLITPVFSSSENT Trigger: CGTGTTCTCACTAGATGAGAAAACAGGCGTGATCAAGAATAACCAGTCTCTGGATTTTGAAGACATAGAGAGGTACACCATGGAAGTAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003599.9 |
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| CDS CCA 90 bp | CAGATTTTCACTAACACTGACCCAATATTCCTCTTTGCTAAACACTaGAGGGTTGTCATTGTTGTCCTTTACAGATATTTCTATCTGAGT | + |
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Preference number: 5 (lower is better) Translates to: QIFTNTDPIFLFAKH*RVVIVVLYRYFYLS Trigger: ACTCAGATAGAAATATCTGTAAAGGACAACAATGACAACCCTCCAGTGTTTAGCAAAGAGGAATATTGGGTCAGTGTTAGTGAAAATCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003599.9 |
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| CDS CCA 72 bp | CGGGTCTCTGGGCTTGAGAGAAACGCCAGTCAGTGTTaGGCGGGGCTTGCGGTGTTAGAGTCTCAGGATGTG | + |
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Preference number: 6 (lower is better) Translates to: RVSGLERNASQC*AGLAVLESQDV Trigger: CACATCCTGAGACTCTAACACCGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCCCAGAGACCCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003599.9 |
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| CDS CCA 72 bp | AAAGACCAGACTGAAAGCAGCCCCAGACCGAGGGGCTaGAAGAGTGTCGCAGTCGAAGTGCAATGGCTAGAA | + |
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Preference number: 6 (lower is better) Translates to: KDQTESSPRPRG*KSVAVEVQWLE Trigger: TTCTAGCCATTGCACTTCGACTGCGACACTCTTCCAGCCCCTCGGTCTGGGGCTGCTTTCAGTCTGGTCTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003599.9 |
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| CDS CAA 72 bp | TGGGCGGGGCTTGCGGTGTTAGAGTCTCAGGATGTGTaGTCAAATCATCTCCAAGGTGAAGCGGAATTAAGG | + |
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Preference number: 6 (lower is better) Translates to: WAGLAVLESQDV*SNHLQGEAELR Trigger: CCTTAATTCCGCTTCACCTTGGAGATGATTTGACAACACATCCTGAGACTCTAACACCGCAAGCCCCGCCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003599.9 |
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| CDS TCA 72 bp | ACAACCACCACTCCCGGAGGAGAATTCTCCAAGATATaGTCAGAAAGGGAGGTGATGGTGATTTCTGGACTG | + |
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Preference number: 6 (lower is better) Translates to: TTTTPGGEFSKI*SEREVMVISGL Trigger: CAGTCCAGAAATCACCATCACCTCCCTTTCTGATCATATCTTGGAGAATTCTCCTCCGGGAGTGGTGGTTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003599.9 |
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| CDS TCA 72 bp | AGAGTCTCAGGATGTGTTGTCAAATCATCTCCAAGGTaGAGCGGAATTAAGGCCCCAGGAGAACTACCGGAA | + |
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Preference number: 6 (lower is better) Translates to: RVSGCVVKSSPR*SGIKAPGELPE Trigger: TTCCGGTAGTTCTCCTGGGGCCTTAATTCCGCTTCACCTTGGAGATGATTTGACAACACATCCTGAGACTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003599.9 |
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| CDS CAA 72 bp | TCACGCCTGTTTTCTCATCTAGTGAGAACACGTGTCTaGTGCTCTGCGCAGTGCTCCGAAAGTAGTAAAGTA | + |
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Preference number: 6 (lower is better) Translates to: SRLFSHLVRTRV*CSAQCSESSKV Trigger: TACTTTACTACTTTCGGAGCACTGCGCAGAGCACAAGACACGTGTTCTCACTAGATGAGAAAACAGGCGTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003599.9 |
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| CDS CAA 72 bp | TTGCTAGAAGAAGCTTGGATCTTGAAAGGCAGGTCTTaGCCTATATCACACGTGACTTCCCCATTTCCTCCG | + |
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Preference number: 6 (lower is better) Translates to: LLEEAWILKGRS*PISHVTSPFPP Trigger: CGGAGGAAATGGGGAAGTCACGTGTGATATAGGCAAAGACCTGCCTTTCAAGATCCAAGCTTCTTCTAGCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003599.9 |
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| CDS CAA 90 bp | TCTGCCACATGGACTATGTATGAAGATTTCTGGAAAGCCGGAGCGTaGTCGTTAATGTCAGTGATGTGCAGAACGATGGTTGTACTGGAA | + |
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Preference number: 6 (lower is better) Translates to: SATWTMYEDFWKAGA*SLMSVMCRTMVVLE Trigger: TTCCAGTACAACCATCGTTCTGCACATCACTGACATTAACGACAACGCTCCGGCTTTCCAGAAATCTTCATACATAGTCCATGTGGCAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003599.9 |
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| CDS TCA 72 bp | ATTAAGGCCCCAGGAGAACTACCGGAAACGATCTCTTaGGAAGAAGGCAAAGGTGCGCTACATTTCAGAAAA | + |
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Preference number: 6 (lower is better) Translates to: IKAPGELPETIS*EEGKGALHFRK Trigger: TTTTCTGAAATGTAGCGCACCTTTGCCTTCTTCTCAAGAGATCGTTTCCGGTAGTTCTCCTGGGGCCTTAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003599.9 |
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| CDS CAA 72 bp | TGGACTATGTATGAAGATTTCTGGAAAGCCGGAGCGTaGTCGTTAATGTCAGTGATGTGCAGAACGATGGTT | + |
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Preference number: 6 (lower is better) Translates to: WTMYEDFWKAGA*SLMSVMCRTMV Trigger: AACCATCGTTCTGCACATCACTGACATTAACGACAACGCTCCGGCTTTCCAGAAATCTTCATACATAGTCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003599.9 |
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| CDS TCA 72 bp | TCTCTATGTCTTCAAAATCCAGAGACTGGTTATTCTTaGTCACGCCTGTTTTCTCATCTAGTGAGAACACGT | + |
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Preference number: 6 (lower is better) Translates to: SLCLQNPETGYS*SRLFSHLVRTR Trigger: ACGTGTTCTCACTAGATGAGAAAACAGGCGTGATCAAGAATAACCAGTCTCTGGATTTTGAAGACATAGAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003599.9 |
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| CDS CCA 72 bp | ATGGTGTACCTCTCTATGTCTTCAAAATCCAGAGACTaGTTATTCTTGATCACGCCTGTTTTCTCATCTAGT | + |
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Preference number: 6 (lower is better) Translates to: MVYLSMSSKSRD*LFLITPVFSSS Trigger: ACTAGATGAGAAAACAGGCGTGATCAAGAATAACCAGTCTCTGGATTTTGAAGACATAGAGAGGTACACCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003599.9 |
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| CDS CCA 72 bp | ACTAACACTGACCCAATATTCCTCTTTGCTAAACACTaGAGGGTTGTCATTGTTGTCCTTTACAGATATTTC | + |
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Preference number: 6 (lower is better) Translates to: TNTDPIFLFAKH*RVVIVVLYRYF Trigger: GAAATATCTGTAAAGGACAACAATGACAACCCTCCAGTGTTTAGCAAAGAGGAATATTGGGTCAGTGTTAGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003599.9 |
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