Pregenerated sensors for PCDHGB5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000103749

Ensembl transcript IDs: ENSMUST00000192535.2

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	CGCTCGTGCCGGGTCTCTGGGCTTGAGAGAAACGCCAGTCAGTGTTaGGCGGGGCTTGCGGTGTTAGAGGTTCGGGGTGGGAAGTCGGCT	+
Preference number: 5 (lower is better) Translates to: RSCRVSGLERNASQC*AGLAVLEVRGGKSA Trigger: AGCCGACTTCCCACCCCGAACCTCTAACACCGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCCCAGAGACCCGGCACGAGCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000192535.2
CDS GCA 90 bp	TCTGTTGTCGTTTTCATCTTGAATGTTAATTTCAACTGTACATTGTaGAACCAGGCCTCCGCCATCCCGCGCTTCCACTACTATAGAATA	+
Preference number: 5 (lower is better) Translates to: SVVVFILNVNFNCTL*NQASAIPRFHYYRI Trigger: TATTCTATAGTAGTGGAAGCGCGGGATGGCGGAGGCCTGGTTGCACAATGTACAGTTGAAATTAACATTCAAGATGAAAACGACAACAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192535.2
CDS CCA 72 bp	CGGGTCTCTGGGCTTGAGAGAAACGCCAGTCAGTGTTaGGCGGGGCTTGCGGTGTTAGAGGTTCGGGGTGGG	+
Preference number: 6 (lower is better) Translates to: RVSGLERNASQC*AGLAVLEVRGG Trigger: CCCACCCCGAACCTCTAACACCGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCCCAGAGACCCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000192535.2
CDS TCA 72 bp	CATGACCATTGGATCCCAGATCCGGGTCGGAGGCGCTaGCTTGAGCGATGGAAGCTCCAGGTGGGTTGTTCT	+
Preference number: 6 (lower is better) Translates to: HDHWIPDPGRRR*LERWKLQVGCS Trigger: AGAACAACCCACCTGGAGCTTCCATCGCTCAAGTCAGCGCCTCCGACCCGGATCTGGGATCCAATGGTCATG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192535.2
CDS CCA 72 bp	GTGTTGGGCGGGGCTTGCGGTGTTAGAGGTTCGGGGTaGGAAGTCGGCTCACTGGAATCACAAAGAGGAAAC	+
Preference number: 6 (lower is better) Translates to: VLGGACGVRGSG*EVGSLESQRGN Trigger: GTTTCCTCTTTGTGATTCCAGTGAGCCGACTTCCCACCCCGAACCTCTAACACCGCAAGCCCCGCCCAACAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000192535.2
CDS CAA 90 bp	TGGTCTGTTGTCGTTTTCATCTTGAATGTTAATTTCAACTGTACATaGTGCAACCAGGCCTCCGCCATCCCGCGCTTCCACTACTATAGA	+
Preference number: 6 (lower is better) Translates to: WSVVVFILNVNFNCT*CNQASAIPRFHYYR Trigger: TCTATAGTAGTGGAAGCGCGGGATGGCGGAGGCCTGGTTGCACAATGTACAGTTGAAATTAACATTCAAGATGAAAACGACAACAGACCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192535.2
CDS CAA 90 bp	AGCTCTCGGTCTAAGGCTCTATCCGTAACCAATTTATACGAGTTTTaGGAAGAAGAGATAATTTTAAAGGGCACTTCATCGTCTAGTCGA	+
Preference number: 6 (lower is better) Translates to: SSRSKALSVTNLYEF*EEEIILKGTSSSSR Trigger: TCGACTAGACGATGAAGTGCCCTTTAAAATTATCTCTTCTTCCAAAAACTCGTATAAATTGGTTACGGATAGAGCCTTAGACCGAGAGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000192535.2

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