Pregenerated sensors for PCDHGB4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000103585

Ensembl transcript IDs: ENSMUST00000195363.2

Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 90 bp	CGGGGAGCATGGCCCTGGCTCCTACCAGTATCCTGGGGTGAGCCCTaGAATTCTGAGGCCTGGGTACAAGTAAGGACGAGCTGGACTGGC	+
Preference number: 1 (lower is better) Translates to: RGAWPWLLPVSWGEP*NSEAWVQVRTSWTG Trigger: GCCAGTCCAGCTCGTCCTTACTTGTACCCAGGCCTCAGAATTTCAGGGCTCACCCCAGGATACTGGTAGGAGCCAGGGCCATGCTCCCCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000195363.2
3UTR TCA 90 bp	CGTGTGGACACAGCACAAAACACAGCACGGGCCGCGCAGGCAGATTaGGATTCAAAGGACAGACGGCTGTGTACAGCCCACCGCCCGCTG	+
Preference number: 1 (lower is better) Translates to: RVDTAQNTARAAQAD*DSKDRRLCTAHRPL Trigger: CAGCGGGCGGTGGGCTGTACACAGCCGTCTGTCCTTTGAATCTCAATCTGCCTGCGCGGCCCGTGCTGTGTTTTGTGCTGTGTCCACACG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000195363.2
3UTR TCA 90 bp	AAAGAGAAGACTGGTACCAAACCATGCTTTGGGGGAAAGCTGAACTaGAGGAGAGGCCAAAAGATTGTAATACTCTCCCTACCGTTCAGA	+
Preference number: 1 (lower is better) Translates to: KEKTGTKPCFGGKLN*RRGQKIVILSLPFR Trigger: TCTGAACGGTAGGGAGAGTATTACAATCTTTTGGCCTCTCCTTCAGTTCAGCTTTCCCCCAAAGCATGGTTTGGTACCAGTCTTCTCTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000195363.2
CDS CCA 90 bp	CGCTCGTGCCGGGTCTCTGGGCTTGAGAGAAACGCCAGTCAGTGTTaGGCGGGGCTTGCTGATGGGAGGTTGACTCATTGGAATTACAAA	+
Preference number: 5 (lower is better) Translates to: RSCRVSGLERNASQC*AGLADGRLTHWNYK Trigger: TTTGTAATTCCAATGAGTCAACCTCCCATCAGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCCCAGAGACCCGGCACGAGCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000195363.2
CDS CCA 90 bp	GTTGTAATTTCTCCGGTATTAGAATCCAGGTTAAATTGGGTAACCTaGCCAGCTTCACTGAAAGAAAACGTGATCTCGGAGTTGACACCC	+
Preference number: 5 (lower is better) Translates to: VVISPVLESRLNWVT*PASLKENVISELTP Trigger: GGGTGTCAACTCCGAGATCACGTTTTCTTTCAGTGAAGCTGGCCAGGTTACCCAATTTAACCTGGATTCTAATACCGGAGAAATTACAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000195363.2
CDS CCA 90 bp	GTATGCAGAGTTGTAATTTCTCCGGTATTAGAATCCAGGTTAAATTaGGTAACCTGGCCAGCTTCACTGAAAGAAAACGTGATCTCGGAG	+
Preference number: 5 (lower is better) Translates to: VCRVVISPVLESRLN*VTWPASLKENVISE Trigger: CTCCGAGATCACGTTTTCTTTCAGTGAAGCTGGCCAGGTTACCCAATTTAACCTGGATTCTAATACCGGAGAAATTACAACTCTGCATAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000195363.2
CDS TCA 72 bp	GGTCACCCACCAACAAGCGCATGCTCACATTGGCGCTaGGTGTGGGCGATCCGTGGTCCCGCGCCTGCAGTG	+
Preference number: 6 (lower is better) Translates to: GHPPTSACSHWR*VWAIRGPAPAV Trigger: CACTGCAGGCGCGGGACCACGGATCGCCCACACTCAGCGCCAATGTGAGCATGCGCTTGTTGGTGGGTGACC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000195363.2
CDS CAA 72 bp	TCGAGCGTGGGATACAGCACTCGGGGCGCGTTGTCGTaGCGGTCACCCACCAACAAGCGCATGCTCACATTG	+
Preference number: 6 (lower is better) Translates to: SSVGYSTRGALS*RSPTNKRMLTL Trigger: CAATGTGAGCATGCGCTTGTTGGTGGGTGACCGCAACGACAACGCGCCCCGAGTGCTGTATCCCACGCTCGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000195363.2
CDS CCA 72 bp	CGGGTCTCTGGGCTTGAGAGAAACGCCAGTCAGTGTTaGGCGGGGCTTGCTGATGGGAGGTTGACTCATTGG	+
Preference number: 6 (lower is better) Translates to: RVSGLERNASQC*AGLADGRLTHW Trigger: CCAATGAGTCAACCTCCCATCAGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCCCAGAGACCCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000195363.2
CDS CCA 72 bp	CCACTTCCGACTGAAAGCAGCCCCATGCCTTCCTGCTaGAGGAGTGTCGCAGTCGAAGTGCAATGGCTAGAA	+
Preference number: 6 (lower is better) Translates to: PLPTESSPMPSC*RSVAVEVQWLE Trigger: TTCTAGCCATTGCACTTCGACTGCGACACTCCTCCAGCAGGAAGGCATGGGGCTGCTTTCAGTCGGAAGTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000195363.2
CDS TCA 72 bp	CATCGGTCACTAGGACCTGTATCTGTGCAGTGCTGTTaGGGGGTGGATGCCCAAAGTCCAAAGCAGTCAGGG	+
Preference number: 6 (lower is better) Translates to: HRSLGPVSVQCC*GVDAQSPKQSG Trigger: CCCTGACTGCTTTGGACTTTGGGCATCCACCCCTCAACAGCACTGCACAGATACAGGTCCTAGTGACCGATG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000195363.2
CDS TCA 72 bp	CTGGGGCGTTATCGTTCACATCGCCTATATGCAAGGTaGCACTTGAGCTGGAAGAGAGAGGCGGGTCACCCT	+
Preference number: 6 (lower is better) Translates to: LGRYRSHRLYAR*HLSWKREAGHP Trigger: AGGGTGACCCGCCTCTCTCTTCCAGCTCAAGTGTCACCTTGCATATAGGCGATGTGAACGATAACGCCCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000195363.2
CDS CAA 72 bp	GTGACACTTGAGCTGGAAGAGAGAGGCGGGTCACCCTaGTCAGTAGCTCTAATAGTAATGTTGTATTCCGGG	+
Preference number: 6 (lower is better) Translates to: VTLELEERGGSP*SVALIVMLYSG Trigger: CCCGGAATACAACATTACTATTAGAGCTACTGACAAGGGTGACCCGCCTCTCTCTTCCAGCTCAAGTGTCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000195363.2
CDS CAA 90 bp	GAAGAGAGAGGCGGGTCACCCTTGTCAGTAGCTCTAATAGTAATGTaGTATTCCGGGTTCTGCTCACGATCTAGAACTCCATCCGTCACT	+
Preference number: 6 (lower is better) Translates to: EERGGSPLSVALIVM*YSGFCSRSRTPSVT Trigger: AGTGACGGATGGAGTTCTAGATCGTGAGCAGAACCCGGAATACAACATTACTATTAGAGCTACTGACAAGGGTGACCCGCCTCTCTCTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000195363.2
CDS CAA 72 bp	GGCGGGTCACCCTTGTCAGTAGCTCTAATAGTAATGTaGTATTCCGGGTTCTGCTCACGATCTAGAACTCCA	+
Preference number: 6 (lower is better) Translates to: GGSPLSVALIVM*YSGFCSRSRTP Trigger: TGGAGTTCTAGATCGTGAGCAGAACCCGGAATACAACATTACTATTAGAGCTACTGACAAGGGTGACCCGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000195363.2
CDS CAA 90 bp	ATATGCAAGGTGACACTTGAGCTGGAAGAGAGAGGCGGGTCACCCTaGTCAGTAGCTCTAATAGTAATGTTGTATTCCGGGTTCTGCTCA	+
Preference number: 6 (lower is better) Translates to: ICKVTLELEERGGSP*SVALIVMLYSGFCS Trigger: TGAGCAGAACCCGGAATACAACATTACTATTAGAGCTACTGACAAGGGTGACCCGCCTCTCTCTTCCAGCTCAAGTGTCACCTTGCATAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000195363.2
CDS CAA 90 bp	CCGCCTTCTAATTTACAGATAACTTCTCCATTGCGTCCAGAATCTTaGTCACGGGTTTTAAGCAGAGCGATATATGTCCCTGGCTCAGCA	+
Preference number: 6 (lower is better) Translates to: PPSNLQITSPLRPES*SRVLSRAIYVPGSA Trigger: TGCTGAGCCAGGGACATATATCGCTCTGCTTAAAACCCGTGACAAAGATTCTGGACGCAATGGAGAAGTTATCTGTAAATTAGAAGGCGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000195363.2
CDS TCA 72 bp	GAGCGATATATGTCCCTGGCTCAGCATCCTCCATTATaGGATCAGGTAGAGATTGGAATAACACTTCAGGGA	+
Preference number: 6 (lower is better) Translates to: ERYMSLAQHPPL*DQVEIGITLQG Trigger: TCCCTGAAGTGTTATTCCAATCTCTACCTGATCTCATAATGGAGGATGCTGAGCCAGGGACATATATCGCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000195363.2
CDS CCA 72 bp	TCTCCGGTATTAGAATCCAGGTTAAATTGGGTAACCTaGCCAGCTTCACTGAAAGAAAACGTGATCTCGGAG	+
Preference number: 6 (lower is better) Translates to: SPVLESRLNWVT*PASLKENVISE Trigger: CTCCGAGATCACGTTTTCTTTCAGTGAAGCTGGCCAGGTTACCCAATTTAACCTGGATTCTAATACCGGAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000195363.2
CDS TCA 72 bp	TGTTTTCTGCAACATGGACCAGGTATGAAACCTTCGTaGAAACTGGGGCGTTATCGTTCACATCGCCTATAT	+
Preference number: 6 (lower is better) Translates to: CFLQHGPGMKPS*KLGRYRSHRLY Trigger: ATATAGGCGATGTGAACGATAACGCCCCAGTTTTCACGAAGGTTTCATACCTGGTCCATGTTGCAGAAAACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000195363.2
CDS CCA 72 bp	GGCTCAGCATCCTCCATTATGAGATCAGGTAGAGATTaGAATAACACTTCAGGGACATTGTCGTTCTCATCT	+
Preference number: 6 (lower is better) Translates to: GSASSIMRSGRD*NNTSGTLSFSS Trigger: AGATGAGAACGACAATGTCCCTGAAGTGTTATTCCAATCTCTACCTGATCTCATAATGGAGGATGCTGAGCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000195363.2
CDS CAA 72 bp	GGAGCACCGCCTTCTAATTTACAGATAACTTCTCCATaGCGTCCAGAATCTTTGTCACGGGTTTTAAGCAGA	+
Preference number: 6 (lower is better) Translates to: GAPPSNLQITSP*RPESLSRVLSR Trigger: TCTGCTTAAAACCCGTGACAAAGATTCTGGACGCAATGGAGAAGTTATCTGTAAATTAGAAGGCGGTGCTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000195363.2
CDS CAA 90 bp	TGTATGCAGAGTTGTAATTTCTCCGGTATTAGAATCCAGGTTAAATaGGGTAACCTGGCCAGCTTCACTGAAAGAAAACGTGATCTCGGA	+
Preference number: 6 (lower is better) Translates to: CMQSCNFSGIRIQVK*GNLASFTERKRDLG Trigger: TCCGAGATCACGTTTTCTTTCAGTGAAGCTGGCCAGGTTACCCAATTTAACCTGGATTCTAATACCGGAGAAATTACAACTCTGCATACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000195363.2
CDS GCA 72 bp	TCAGTAGCTCTAATAGTAATGTTGTATTCCGGGTTCTaGTCACGATCTAGAACTCCATCCGTCACTAGTTTA	+
Preference number: 6 (lower is better) Translates to: SVALIVMLYSGF*SRSRTPSVTSL Trigger: TAAACTAGTGACGGATGGAGTTCTAGATCGTGAGCAGAACCCGGAATACAACATTACTATTAGAGCTACTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000195363.2