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Pregenerated sensors for PCDHGB2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000102748

Ensembl transcript IDs: ENSMUST00000195112.2

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp CTGGGCTTGAGAGAAACGCCAGTCAGTGTTGGGCGGGGCTTGCTTTaGGATAGAATCCGAGACAAACGGAACGTCAGTGTCTCCAAGAGT +
Preference number: 5 (lower is better)
Translates to: LGLRETPVSVGRGLL*DRIRDKRNVSVSKS
Trigger: ACTCTTGGAGACACTGACGTTCCGTTTGTCTCGGATTCTATCTCAAAGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195112.2
CDS TCA 90 bp CCAAGAGTACCTGGTACCCAAGAGTCGTCGCCGCAGAGGAGGTCCTaGGGAGCAACTTCCGGAGTCACATTGAGAAAATTAAACTCTGTC +
Preference number: 5 (lower is better)
Translates to: PRVPGTQESSPQRRS*GATSGVTLRKLNSV
Trigger: GACAGAGTTTAATTTTCTCAATGTGACTCCGGAAGTTGCTCCTCAGGACCTCCTCTGCGGCGACGACTCTTGGGTACCAGGTACTCTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195112.2
CDS TCA 90 bp ATATTTAAGGGCTTCTCAGCGACAATATCGAACTCCAAAACACACTaGGGCTGCTTCCCGCAAACCTGCTCTCTGTCTATTCTGTCACCC +
Preference number: 5 (lower is better)
Translates to: IFKGFSATISNSKTH*GCFPQTCSLSILSP
Trigger: GGGTGACAGAATAGACAGAGAGCAGGTTTGCGGGAAGCAGCCTCAGTGTGTTTTGGAGTTCGATATTGTCGCTGAGAAGCCCTTAAATAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195112.2
CDS GCA 72 bp CCGTGGAACAAAAGCAACAGGAAAGGCGACAGTACCTaGAGCCACCAGGCCGGACCGCTCCCAGAGCCCCTC +
Preference number: 6 (lower is better)
Translates to: PWNKSNRKGDST*SHQAGPLPEPL
Trigger: GAGGGGCTCTGGGAGCGGTCCGGCCTGGTGGCTGCAGGTACTGTCGCCTTTCCTGTTGCTTTTGTTCCACGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000195112.2
CDS CAA 90 bp GAGGAGAGCGGGGGCTTACCCCTATCGGCAGCTACAATGGTGACGTaGTATTCCGGTATCGCCTCCCGGTCTAGAGTTCTGTCTGTCACT +
Preference number: 6 (lower is better)
Translates to: EESGGLPLSAATMVT*YSGIASRSRVLSVT
Trigger: AGTGACAGACAGAACTCTAGACCGGGAGGCGATACCGGAATACAACGTCACCATTGTAGCTGCCGATAGGGGTAAGCCCCCGCTCTCCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000195112.2
CDS TCA 72 bp AGAGAAACGCCAGTCAGTGTTGGGCGGGGCTTGCTTTaGGATAGAATCCGAGACAAACGGAACGTCAGTGTC +
Preference number: 6 (lower is better)
Translates to: RETPVSVGRGLL*DRIRDKRNVSV
Trigger: GACACTGACGTTCCGTTTGTCTCGGATTCTATCTCAAAGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195112.2
CDS TCA 72 bp GGCTTCTCAGCGACAATATCGAACTCCAAAACACACTaGGGCTGCTTCCCGCAAACCTGCTCTCTGTCTATT +
Preference number: 6 (lower is better)
Translates to: GFSATISNSKTH*GCFPQTCSLSI
Trigger: AATAGACAGAGAGCAGGTTTGCGGGAAGCAGCCTCAGTGTGTTTTGGAGTTCGATATTGTCGCTGAGAAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195112.2
CDS CCA 72 bp CGAGGGCTGGATCCAATGGAAATGCTTTACCTGGTCTaGTGGACTCTCCAATGTTTAAATCAACCTCACTCT +
Preference number: 6 (lower is better)
Translates to: RGLDPMEMLYLV*WTLQCLNQPHS
Trigger: AGAGTGAGGTTGATTTAAACATTGGAGAGTCCACCAGACCAGGTAAAGCATTTCCATTGGATCCAGCCCTCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195112.2
CDS TCA 72 bp TGGACTCTCCAATGTTTAAATCAACCTCACTCTGTTTaGATAGAGGAGCGTTGTCGTTCACATCCTGAAGAA +
Preference number: 6 (lower is better)
Translates to: WTLQCLNQPHSV*IEERCRSHPEE
Trigger: TTCTTCAGGATGTGAACGACAACGCTCCTCTATTCAAACAGAGTGAGGTTGATTTAAACATTGGAGAGTCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195112.2
CDS CCA 72 bp TCATTCTCATCCAGAATTTTCACTTGGATACTACAATaGGATGCTAGGTCTCCGGGATCTTTTGCTTCTACA +
Preference number: 6 (lower is better)
Translates to: SFSSRIFTWILQ*DARSPGSFAST
Trigger: TGTAGAAGCAAAAGATCCCGGAGACCTAGCATCCCATTGTAGTATCCAAGTGAAAATTCTGGATGAGAATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000195112.2
CDS CAA 72 bp TCCAAATTATCCTTTGTCGTGATTTCTCCTGTTCTCTaGTCTAAGTTAAAAATCCGTTCCACTTGTTCATCC +
Preference number: 6 (lower is better)
Translates to: SKLSFVVISPVL*SKLKIRSTCSS
Trigger: GGATGAACAAGTGGAACGGATTTTTAACTTAGACAAGAGAACAGGAGAAATCACGACAAAGGATAATTTGGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000195112.2