RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PCDHGB1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000103037

Ensembl transcript IDs: ENSMUST00000192931.2

Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTTTGCATATTCAACTCCCTAGGGTATAGAGAGGGGGTGTTGGCTTaGGCACGTGTTTCTGTTTCCCAACGGGGAGCATGGCCCTGGCTC +
Preference number: 1 (lower is better)
Translates to: LCIFNSLGYREGVLA*ARVSVSQRGAWPWL
Trigger: GAGCCAGGGCCATGCTCCCCGTTGGGAAACAGAAACACGTGCCCAAGCCAACACCCCCTCTCTATACCCTAGGGAGTTGAATATGCAAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000192931.2
3UTR CCA 90 bp GGGAGAGGGCGGCAGGAGATGGATAAGCCTGCCTGGGTTGGAAGATaGAGGAGTTCAGCTGTAACTAAGGGAGTGTGGCATGGTTTGTGT +
Preference number: 1 (lower is better)
Translates to: GRGRQEMDKPAWVGR*RSSAVTKGVWHGLC
Trigger: ACACAAACCATGCCACACTCCCTTAGTTACAGCTGAACTCCTCCATCTTCCAACCCAGGCAGGCTTATCCATCTCCTGCCGCCCTCTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192931.2
CDS CCA 90 bp CGCTCGTGCCGGGTCTCTGGGCTTGAGAGAAACGCCAGTCAGTGTTaGGCGGGGCTTGCTGGAAAGCAGAGTCGTCCGAGACTTGGGGAT +
Preference number: 5 (lower is better)
Translates to: RSCRVSGLERNASQC*AGLAGKQSRPRLGD
Trigger: ATCCCCAAGTCTCGGACGACTCTGCTTTCCAGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCCCAGAGACCCGGCACGAGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000192931.2
CDS CCA 90 bp CACAGAAGGATCATCGCACAGGAGATCCTGAGGGGGAGCAACCTCTaGTGCCACGTGGTGAAAATTAAACCCTGCCATAGTCGTAGAATG +
Preference number: 5 (lower is better)
Translates to: HRRIIAQEILRGSNL*CHVVKIKPCHSRRM
Trigger: CATTCTACGACTATGGCAGGGTTTAATTTTCACCACGTGGCACCAGAGGTTGCTCCCCCTCAGGATCTCCTGTGCGATGATCCTTCTGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000192931.2
CDS TCA 90 bp CATCAGGACTTTCCTTCGTTGACAAGGAGAAGTGTGGATTGGGGCTaGCAGTGTACATCTTCAGGGAGTTGCTTCCCACATCTGCATCTC +
Preference number: 5 (lower is better)
Translates to: HQDFPSLTRRSVDWG*QCTSSGSCFPHLHL
Trigger: GAGATGCAGATGTGGGAAGCAACTCCCTGAAGATGTACACTGTCAGCCCCAATCCACACTTCTCCTTGTCAACGAAGGAAAGTCCTGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192931.2
CDS GCA 90 bp CTTGCTGGAAAGCAGAGTCGTCCGAGACTTGGGGATCTTCATTATTaGCACATACAACCACAGAAGGATCATCGCACAGGAGATCCTGAG +
Preference number: 5 (lower is better)
Translates to: LAGKQSRPRLGDLHY*HIQPQKDHRTGDPE
Trigger: CTCAGGATCTCCTGTGCGATGATCCTTCTGTGGTTGTATGTGGCAATAATGAAGATCCCCAAGTCTCGGACGACTCTGCTTTCCAGCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192931.2
CDS CCA 90 bp TTAATGAGGGCGATTACTGTTCCAAGGACTGAATCCTCTGGAACTTaGTTAGAAAAGGACATGAATGTCACCTCTGGGGCATTGTCGTTG +
Preference number: 5 (lower is better)
Translates to: LMRAITVPRTESSGT*LEKDMNVTSGALSL
Trigger: CAACGACAATGCCCCAGAGGTGACATTCATGTCCTTTTCTAACCAAGTTCCAGAGGATTCAGTCCTTGGAACAGTAATCGCCCTCATTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000192931.2
CDS CCA 90 bp AGCTCCAGTATTTGGATTGAGATTGAAGACAAGGTTAGTACTTGCTaGGGCATTAAGGAAGGCATAGGTGATCTCTCCGTGAATACTCTC +
Preference number: 5 (lower is better)
Translates to: SSSIWIEIEDKVSTC*GIKEGIGDLSVNTL
Trigger: GAGAGTATTCACGGAGAGATCACCTATGCCTTCCTTAATGCCCCAGCAAGTACTAACCTTGTCTTCAATCTCAATCCAAATACTGGAGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192931.2
CDS TCA 90 bp ATCTTTGTCTCGAACTTTAATGAGGGCGATTACTGTTCCAAGGACTaGATCCTCTGGAACTTGGTTAGAAAAGGACATGAATGTCACCTC +
Preference number: 5 (lower is better)
Translates to: IFVSNFNEGDYCSKD*ILWNLVRKGHECHL
Trigger: GAGGTGACATTCATGTCCTTTTCTAACCAAGTTCCAGAGGATTCAGTCCTTGGAACAGTAATCGCCCTCATTAAAGTTCGAGACAAAGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192931.2
CDS CCA 90 bp TTCTTCAAAATCCAATGTACCATTAGTTGTGATAGCTCCAGTATTTaGATTGAGATTGAAGACAAGGTTAGTACTTGCTGGGGCATTAAG +
Preference number: 5 (lower is better)
Translates to: FFKIQCTISCDSSSI*IEIEDKVSTCWGIK
Trigger: CTTAATGCCCCAGCAAGTACTAACCTTGTCTTCAATCTCAATCCAAATACTGGAGCTATCACAACTAATGGTACATTGGATTTTGAAGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000192931.2
CDS CCA 72 bp CGGGTCTCTGGGCTTGAGAGAAACGCCAGTCAGTGTTaGGCGGGGCTTGCTGGAAAGCAGAGTCGTCCGAGA +
Preference number: 6 (lower is better)
Translates to: RVSGLERNASQC*AGLAGKQSRPR
Trigger: TCTCGGACGACTCTGCTTTCCAGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCCCAGAGACCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192931.2
CDS CAA 72 bp GGCTTGAGAGAAACGCCAGTCAGTGTTGGGCGGGGCTaGCTGGAAAGCAGAGTCGTCCGAGACTTGGGGATC +
Preference number: 6 (lower is better)
Translates to: GLRETPVSVGRG*LESRVVRDLGI
Trigger: GATCCCCAAGTCTCGGACGACTCTGCTTTCCAGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000192931.2
CDS CCA 72 bp GGGTGGTGCTGCTTAGGGGCGGGTCTCCACCATCCATaGCGGTCAGTATTAAGTGATGGGAGCTCTGATGCT +
Preference number: 6 (lower is better)
Translates to: GWCCLGAGLHHP*RSVLSDGSSDA
Trigger: AGCATCAGAGCTCCCATCACTTAATACTGACCGCCATGGATGGTGGAGACCCGCCCCTAAGCAGCACCACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192931.2
CDS CAA 90 bp GGGTCTCTGGGCTTGAGAGAAACGCCAGTCAGTGTTGGGCGGGGCTaGCTGGAAAGCAGAGTCGTCCGAGACTTGGGGATCTTCATTATT +
Preference number: 6 (lower is better)
Translates to: GSLGLRETPVSVGRG*LESRVVRDLGIFII
Trigger: AATAATGAAGATCCCCAAGTCTCGGACGACTCTGCTTTCCAGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCCCAGAGACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000192931.2
CDS GCA 72 bp ATCGCACAGGAGATCCTGAGGGGGAGCAACCTCTGGTaGCACGTGGTGAAAATTAAACCCTGCCATAGTCGT +
Preference number: 6 (lower is better)
Translates to: IAQEILRGSNLW*HVVKIKPCHSR
Trigger: ACGACTATGGCAGGGTTTAATTTTCACCACGTGGCACCAGAGGTTGCTCCCCCTCAGGATCTCCTGTGCGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000192931.2
CDS CAA 72 bp GGGCGGGGCTTGCTGGAAAGCAGAGTCGTCCGAGACTaGGGGATCTTCATTATTGCCACATACAACCACAGA +
Preference number: 6 (lower is better)
Translates to: GRGLLESRVVRD*GIFIIATYNHR
Trigger: TCTGTGGTTGTATGTGGCAATAATGAAGATCCCCAAGTCTCGGACGACTCTGCTTTCCAGCAAGCCCCGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000192931.2
CDS CCA 72 bp ATCATCGCACAGGAGATCCTGAGGGGGAGCAACCTCTaGTGCCACGTGGTGAAAATTAAACCCTGCCATAGT +
Preference number: 6 (lower is better)
Translates to: IIAQEILRGSNL*CHVVKIKPCHS
Trigger: ACTATGGCAGGGTTTAATTTTCACCACGTGGCACCAGAGGTTGCTCCCCCTCAGGATCTCCTGTGCGATGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000192931.2
CDS CCA 72 bp GGCGGGGCTTGCTGGAAAGCAGAGTCGTCCGAGACTTaGGGATCTTCATTATTGCCACATACAACCACAGAA +
Preference number: 6 (lower is better)
Translates to: GGACWKAESSET*GSSLLPHTTTE
Trigger: TTCTGTGGTTGTATGTGGCAATAATGAAGATCCCCAAGTCTCGGACGACTCTGCTTTCCAGCAAGCCCCGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192931.2
CDS TCA 72 bp TTTCCTTCGTTGACAAGGAGAAGTGTGGATTGGGGCTaGCAGTGTACATCTTCAGGGAGTTGCTTCCCACAT +
Preference number: 6 (lower is better)
Translates to: FPSLTRRSVDWG*QCTSSGSCFPH
Trigger: ATGTGGGAAGCAACTCCCTGAAGATGTACACTGTCAGCCCCAATCCACACTTCTCCTTGTCAACGAAGGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192931.2
CDS GCA 72 bp AAGCAGAGTCGTCCGAGACTTGGGGATCTTCATTATTaGCACATACAACCACAGAAGGATCATCGCACAGGA +
Preference number: 6 (lower is better)
Translates to: KQSRPRLGDLHY*HIQPQKDHRTG
Trigger: TCCTGTGCGATGATCCTTCTGTGGTTGTATGTGGCAATAATGAAGATCCCCAAGTCTCGGACGACTCTGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192931.2
CDS CAA 72 bp TCAGGACTTTCCTTCGTTGACAAGGAGAAGTGTGGATaGGGGCTGACAGTGTACATCTTCAGGGAGTTGCTT +
Preference number: 6 (lower is better)
Translates to: SGLSFVDKEKCG*GLTVYIFRELL
Trigger: AAGCAACTCCCTGAAGATGTACACTGTCAGCCCCAATCCACACTTCTCCTTGTCAACGAAGGAAAGTCCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192931.2
CDS CAA 72 bp AAAGCAGAGTCGTCCGAGACTTGGGGATCTTCATTATaGCCACATACAACCACAGAAGGATCATCGCACAGG +
Preference number: 6 (lower is better)
Translates to: KAESSETWGSSL*PHTTTEGSSHR
Trigger: CCTGTGCGATGATCCTTCTGTGGTTGTATGTGGCAATAATGAAGATCCCCAAGTCTCGGACGACTCTGCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192931.2
CDS CAA 90 bp TTACTTCCATCAGGACTTTCCTTCGTTGACAAGGAGAAGTGTGGATaGGGGCTGACAGTGTACATCTTCAGGGAGTTGCTTCCCACATCT +
Preference number: 6 (lower is better)
Translates to: LLPSGLSFVDKEKCG*GLTVYIFRELLPTS
Trigger: AGATGTGGGAAGCAACTCCCTGAAGATGTACACTGTCAGCCCCAATCCACACTTCTCCTTGTCAACGAAGGAAAGTCCTGATGGAAGTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192931.2
CDS CCA 72 bp GAACATTACAGTGAGCCGTGTGCACCCCTCCGTCCTTaGCTTCTACACCCAATGTGTATCTATTCTTTTCTT +
Preference number: 6 (lower is better)
Translates to: EHYSEPCAPLRP*LLHPMCIYSFL
Trigger: AAGAAAAGAATAGATACACATTGGGTGTAGAAGCCAAGGACGGAGGGGTGCACACGGCTCACTGTAATGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000192931.2
CDS CCA 72 bp GCGATTACTGTTCCAAGGACTGAATCCTCTGGAACTTaGTTAGAAAAGGACATGAATGTCACCTCTGGGGCA +
Preference number: 6 (lower is better)
Translates to: AITVPRTESSGT*LEKDMNVTSGA
Trigger: TGCCCCAGAGGTGACATTCATGTCCTTTTCTAACCAAGTTCCAGAGGATTCAGTCCTTGGAACAGTAATCGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000192931.2
CDS TCA 72 bp TTCTGGGTATTTACTTCCATCAGGACTTTCCTTCGTTaGCAAGGAGAAGTGTGGATTGGGGCTGACAGTGTA +
Preference number: 6 (lower is better)
Translates to: FWVFTSIRTFLR*QGEVWIGADSV
Trigger: TACACTGTCAGCCCCAATCCACACTTCTCCTTGTCAACGAAGGAAAGTCCTGATGGAAGTAAATACCCAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192931.2
CDS GCA 72 bp ATCCCCACTCTCTGCACTAACGCTGAAATAATCCTCTaGACTAACTCTCAGTTTTCGAGCTGGCAATTCTTG +
Preference number: 6 (lower is better)
Translates to: IPTLCTNAEIIL*TNSQFSSWQFL
Trigger: CAAGAATTGCCAGCTCGAAAACTGAGAGTTAGTGCAGAGGATTATTTCAGCGTTAGTGCAGAGAGTGGGGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000192931.2
CDS TCA 72 bp TCGAACTTTAATGAGGGCGATTACTGTTCCAAGGACTaGATCCTCTGGAACTTGGTTAGAAAAGGACATGAA +
Preference number: 6 (lower is better)
Translates to: SNFNEGDYCSKD*ILWNLVRKGHE
Trigger: TTCATGTCCTTTTCTAACCAAGTTCCAGAGGATTCAGTCCTTGGAACAGTAATCGCCCTCATTAAAGTTCGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192931.2
CDS CAA 72 bp TTTCCCAAAGAAATGTGGTGCATTATCGTTAATGTCTaGGATGGCAACCGTTACGTGGAAAATGTTCATCGG +
Preference number: 6 (lower is better)
Translates to: FPKEMWCIIVNV*DGNRYVENVHR
Trigger: CCGATGAACATTTTCCACGTAACGGTTGCCATCCAAGACATTAACGATAATGCACCACATTTCTTTGGGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192931.2
CDS CAA 72 bp CCATTAGTTGTGATAGCTCCAGTATTTGGATTGAGATaGAAGACAAGGTTAGTACTTGCTGGGGCATTAAGG +
Preference number: 6 (lower is better)
Translates to: PLVVIAPVFGLR*KTRLVLAGALR
Trigger: CCTTAATGCCCCAGCAAGTACTAACCTTGTCTTCAATCTCAATCCAAATACTGGAGCTATCACAACTAATGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192931.2
CDS CAA 72 bp ATATGGCATGCCACCAAACCATTTTGTCCAGAATCTTaGTCTCGAACTTTAATGAGGGCGATTACTGTTCCA +
Preference number: 6 (lower is better)
Translates to: IWHATKPFCPES*SRTLMRAITVP
Trigger: TGGAACAGTAATCGCCCTCATTAAAGTTCGAGACAAAGATTCTGGACAAAATGGTTTGGTGGCATGCCATAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192931.2
CDS CCA 72 bp ACAGATCTCCAATTCAATGCTTTTCCCAAAGAAATGTaGTGCATTATCGTTAATGTCTTGGATGGCAACCGT +
Preference number: 6 (lower is better)
Translates to: TDLQFNAFPKEM*CIIVNVLDGNR
Trigger: ACGGTTGCCATCCAAGACATTAACGATAATGCACCACATTTCTTTGGGAAAAGCATTGAATTGGAGATCTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192931.2
CDS CAA 72 bp AATGTACCATTAGTTGTGATAGCTCCAGTATTTGGATaGAGATTGAAGACAAGGTTAGTACTTGCTGGGGCA +
Preference number: 6 (lower is better)
Translates to: NVPLVVIAPVFG*RLKTRLVLAGA
Trigger: TGCCCCAGCAAGTACTAACCTTGTCTTCAATCTCAATCCAAATACTGGAGCTATCACAACTAATGGTACATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192931.2
CDS CAA 90 bp TCAAAATCCAATGTACCATTAGTTGTGATAGCTCCAGTATTTGGATaGAGATTGAAGACAAGGTTAGTACTTGCTGGGGCATTAAGGAAG +
Preference number: 6 (lower is better)
Translates to: SKSNVPLVVIAPVFG*RLKTRLVLAGALRK
Trigger: CTTCCTTAATGCCCCAGCAAGTACTAACCTTGTCTTCAATCTCAATCCAAATACTGGAGCTATCACAACTAATGGTACATTGGATTTTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000192931.2
CDS CCA 72 bp ATCCAATGTACCATTAGTTGTGATAGCTCCAGTATTTaGATTGAGATTGAAGACAAGGTTAGTACTTGCTGG +
Preference number: 6 (lower is better)
Translates to: IQCTISCDSSSI*IEIEDKVSTCW
Trigger: CCAGCAAGTACTAACCTTGTCTTCAATCTCAATCCAAATACTGGAGCTATCACAACTAATGGTACATTGGAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192931.2