Pregenerated sensors for PCDHGA9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000102440

Ensembl transcript IDs: ENSMUST00000091935.7

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	ACAATATGTGATGTTGGTACCCCAGTGGATCCGCCCATTGCATCCTaGAGCAGGTGCGAAGCATGCCAGCGCCGTAGCCTAAGGGCCAGC	+
Preference number: 5 (lower is better) Translates to: TICDVGTPVDPPIAS*SRCEACQRRSLRAS Trigger: GCTGGCCCTTAGGCTACGGCGCTGGCATGCTTCGCACCTGCTGCAGGATGCAATGGGCGGATCCACTGGGGTACCAACATCACATATTGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091935.7
CDS CCA 72 bp	GAGGGAGTTTATGCCCACATCTGGGTCAACCGCTTCTaGGAGTGGATACCTTGCTCCGGGGGCAGCGATTTC	+
Preference number: 6 (lower is better) Translates to: EGVYAHIWVNRF*EWIPCSGGSDF Trigger: GAAATCGCTGCCCCCGGAGCAAGGTATCCACTCCCAGAAGCGGTTGACCCAGATGTGGGCATAAACTCCCTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000091935.7
CDS CAA 72 bp	CAATATGTGATGTTGGTACCCCAGTGGATCCGCCCATaGCATCCTGCAGCAGGTGCGAAGCATGCCAGCGCC	+
Preference number: 6 (lower is better) Translates to: QYVMLVPQWIRP*HPAAGAKHASA Trigger: GGCGCTGGCATGCTTCGCACCTGCTGCAGGATGCAATGGGCGGATCCACTGGGGTACCAACATCACATATTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091935.7
CDS CCA 72 bp	CGGGTCTCTGGGCTTGAGAGAAACGCCAGTCAGTGTTaGGCGGGGCTTGAGGAACCAAAGGAGTGTCATCAA	+
Preference number: 6 (lower is better) Translates to: RVSGLERNASQC*AGLEEPKECHQ Trigger: TTGATGACACTCCTTTGGTTCCTCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCCCAGAGACCCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091935.7
CDS CCA 72 bp	GTTTATGCCCACATCTGGGTCAACCGCTTCTGGGAGTaGATACCTTGCTCCGGGGGCAGCGATTTCACTGAT	+
Preference number: 6 (lower is better) Translates to: VYAHIWVNRFWE*IPCSGGSDFTD Trigger: ATCAGTGAAATCGCTGCCCCCGGAGCAAGGTATCCACTCCCAGAAGCGGTTGACCCAGATGTGGGCATAAAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000091935.7
CDS CCA 72 bp	CATGCACACCCACAATATGTGATGTTGGTACCCCAGTaGATCCGCCCATTGCATCCTGCAGCAGGTGCGAAG	+
Preference number: 6 (lower is better) Translates to: HAHPQYVMLVPQ*IRPLHPAAGAK Trigger: CTTCGCACCTGCTGCAGGATGCAATGGGCGGATCCACTGGGGTACCAACATCACATATTGTGGGTGTGCATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091935.7
CDS CAA 72 bp	AAGTCTGAACCCCATGCACACCCACAATATGTGATGTaGGTACCCCAGTGGATCCGCCCATTGCATCCTGCA	+
Preference number: 6 (lower is better) Translates to: KSEPHAHPQYVM*VPQWIRPLHPA Trigger: TGCAGGATGCAATGGGCGGATCCACTGGGGTACCAACATCACATATTGTGGGTGTGCATGGGGTTCAGACTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091935.7
CDS GCA 72 bp	CACATCTGGGTCAACCGCTTCTGGGAGTGGATACCTTaGTCCGGGGGCAGCGATTTCACTGATTTTTACAAA	+
Preference number: 6 (lower is better) Translates to: HIWVNRFWEWIP*SGGSDFTDFYK Trigger: TTTGTAAAAATCAGTGAAATCGCTGCCCCCGGAGCAAGGTATCCACTCCCAGAAGCGGTTGACCCAGATGTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000091935.7
CDS CCA 72 bp	TTGGTCATGAGCATTGAAAAGGAGGATTACTGTCCCTaGGGGCGCATCTTCCCTTACTGGGCTAAACAGAGA	+
Preference number: 6 (lower is better) Translates to: LVMSIEKEDYCP*GRIFPYWAKQR Trigger: TCTCTGTTTAGCCCAGTAAGGGAAGATGCGCCCCCAGGGACAGTAATCCTCCTTTTCAATGCTCATGACCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091935.7