Pregenerated sensors for PCDHGA8 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000103897

Ensembl transcript IDs: ENSMUST00000066149.9

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	CGCTCGTGCCGGGTCTCTGGGCTTGAGAGAAACGCCAGTCAGTGTTaGGCGGGGCTTGCGGAGCGCAAGCATCTTCATCCTTATTCTCAT	+
Preference number: 5 (lower is better) Translates to: RSCRVSGLERNASQC*AGLAERKHLHPYSH Trigger: ATGAGAATAAGGATGAAGATGCTTGCGCTCCGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCCCAGAGACCCGGCACGAGCG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066149.9
CDS TCA 90 bp	AATCCACTTCTGGAGCCCTGGAGCTGGCGAGACTTCTGCCAGCGCTaGAGTCTGAGAGCTAGGAGGACAATGACAAAGACAAGGAAGACA	+
Preference number: 5 (lower is better) Translates to: NPLLEPWSWRDFCQR*SLRARRTMTKTRKT Trigger: TGTCTTCCTTGTCTTTGTCATTGTCCTCCTAGCTCTCAGACTTCAGCGCTGGCAGAAGTCTCGCCAGCTCCAGGGCTCCAGAAGTGGATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066149.9
CDS CCA 72 bp	CGGGTCTCTGGGCTTGAGAGAAACGCCAGTCAGTGTTaGGCGGGGCTTGCGGAGCGCAAGCATCTTCATCCT	+
Preference number: 6 (lower is better) Translates to: RVSGLERNASQC*AGLAERKHLHP Trigger: AGGATGAAGATGCTTGCGCTCCGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCCCAGAGACCCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066149.9

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