Pregenerated sensors for PCDHGA7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000103472Ensembl transcript IDs: ENSMUST00000192511.2, ENSMUST00000193476.2
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CACAAGAGATGGAGATGGGGCATCTTGGAGCAAATAGGCCAGCTCTaGGTTCAAATAAGAGACCCTCCCAAGACAATAGAAGAAGAAACC | + |
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Preference number: 1 (lower is better) Translates to: HKRWRWGILEQIGQL*VQIRDPPKTIEEET Trigger: GGTTTCTTCTTCTATTGTCTTGGGAGGGTCTCTTATTTGAACCCAGAGCTGGCCTATTTGCTCCAAGATGCCCCATCTCCATCTCTTGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| 3UTR CAA 90 bp | GATCCACCTGTGAGCCCACAGCACAAGAGATGGAGATGGGGCATCTaGGAGCAAATAGGCCAGCTCTGGGTTCAAATAAGAGACCCTCCC | + |
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Preference number: 2 (lower is better) Translates to: DPPVSPQHKRWRWGI*EQIGQLWVQIRDPP Trigger: GGGAGGGTCTCTTATTTGAACCCAGAGCTGGCCTATTTGCTCCAAGATGCCCCATCTCCATCTCTTGTGCTGTGGGCTCACAGGTGGATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| 3UTR CCA 72 bp | TGTGGTGATCCACCTGTGAGCCCACAGCACAAGAGATaGAGATGGGGCATCTTGGAGCAAATAGGCCAGCTC | + |
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Preference number: 3 (lower is better) Translates to: CGDPPVSPQHKR*RWGILEQIGQL Trigger: GAGCTGGCCTATTTGCTCCAAGATGCCCCATCTCCATCTCTTGTGCTGTGGGCTCACAGGTGGATCACCACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| 3UTR TCA 72 bp | ATCCCCAACACTTGTATAAGTACCAAGTATGTGTGGTaGTCCACCTGTGAGCCCACAGCACAAGAGATGGAG | + |
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Preference number: 3 (lower is better) Translates to: IPNTCISTKYVW*STCEPTAQEME Trigger: CTCCATCTCTTGTGCTGTGGGCTCACAGGTGGATCACCACACATACTTGGTACTTATACAAGTGTTGGGGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| 3UTR CCA 72 bp | TGGAGATGGGGCATCTTGGAGCAAATAGGCCAGCTCTaGGTTCAAATAAGAGACCCTCCCAAGACAATAGAA | + |
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Preference number: 3 (lower is better) Translates to: WRWGILEQIGQL*VQIRDPPKTIE Trigger: TTCTATTGTCTTGGGAGGGTCTCTTATTTGAACCCAGAGCTGGCCTATTTGCTCCAAGATGCCCCATCTCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| 3UTR CCA 72 bp | GTTCTTGTGGAAATTAAGATAAAGGAAAAGGGCCTTTaGAGATGGTTCATGGATAAATTGATAGACTTGGAA | + |
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Preference number: 3 (lower is better) Translates to: VLVEIKIKEKGL*RWFMDKLIDLE Trigger: TTCCAAGTCTATCAATTTATCCATGAACCATCTCCAAAGGCCCTTTTCCTTTATCTTAATTTCCACAAGAAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| 3UTR CAA 72 bp | CACAGCACAAAACACAGCACGGGCCGCGCAGGCAGATaGAGATTCAAAGGACAGACGGCTGTGTACAGCCCA | + |
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Preference number: 4 (lower is better) Translates to: HSTKHSTGRAGR*RFKGQTAVYSP Trigger: TGGGCTGTACACAGCCGTCTGTCCTTTGAATCTCAATCTGCCTGCGCGGCCCGTGCTGTGTTTTGTGCTGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192511.2 |
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| CDS-3UTR GCA 90 bp | AATAGGCCAGCTCTGGGTTCAAATAAGAGACCCTCCCAAGACAATAGAAGAAGACGCGGATGCTGGCAGTaGCAGATCGGAGCGGGTCCC | + |
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Preference number: 4 (lower is better) Translates to: NRPALGSNKRPSQDNRRRRGCWQ*QIGAGP Trigger: GGGACCCGCTCCGATCTGGCACTGCCAGCATCCGCG...TCTTCTTCTATTGTCTTGGGAGGGTCTCTTATTTGAACCCAGAGCTGGCCTATT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR TCA 90 bp | GGCCAGCTCTGGGTTCAAATAAGAGACCCTCCCAAGACAATAGAAGAAGAAACCGTGAGGACCAGATGGTaGAGCCCCTCTTCTTCCCGA | + |
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Preference number: 4 (lower is better) Translates to: GQLWVQIRDPPKTIEEETVRTRW*SPSSSR Trigger: TCGGGAAGAAGAGGGGCTTCACCATCTGGTCCTCAC...GGTTTCTTCTTCTATTGTCTTGGGAGGGTCTCTTATTTGAACCCAGAGCTGGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR GCA 90 bp | CCAGCTCTGGGTTCAAATAAGAGACCCTCCCAAGACAATAGAAGAAGAAACCTGGTCCAGCAGGGCTCTTaGTGTGCGCACCTCACCAGT | + |
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Preference number: 4 (lower is better) Translates to: PALGSNKRPSQDNRRRNLVQQGS*CAHLTS Trigger: ACTGGTGAGGTGCGCACAGCAAGAGCCCTGCTGGAC...CAGGTTTCTTCTTCTATTGTCTTGGGAGGGTCTCTTATTTGAACCCAGAGCTGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR TCA 90 bp | GGCCAGCTCTGGGTTCAAATAAGAGACCCTCCCAAGACAATAGAAGAAGAAACCGTGACACATTACTGCTaGGAGGTGGGTCCCCACTGT | + |
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Preference number: 4 (lower is better) Translates to: GQLWVQIRDPPKTIEEETVTHYC*EVGPHC Trigger: ACAGTGGGGACCCACCTCTCAGCAGTAATGTGTCAC...GGTTTCTTCTTCTATTGTCTTGGGAGGGTCTCTTATTTGAACCCAGAGCTGGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR GCA 90 bp | GGCCAGCTCTGGGTTCAAATAAGAGACCCTCCCAAGACAATAGAAGAAGAAACCGTAGAGAATCTGTCCTaGCCAGGCTTCCCACCGCAT | + |
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Preference number: 4 (lower is better) Translates to: GQLWVQIRDPPKTIEEETVENLS*PGFPPH Trigger: ATGCGGTGGGAAGCCTGGGCAGGACAGATTCTCTAC...GGTTTCTTCTTCTATTGTCTTGGGAGGGTCTCTTATTTGAACCCAGAGCTGGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR CCA 90 bp | CCAGCTCTGGGTTCAAATAAGAGACCCTCCCAAGACAATAGAAGAAGAAACCTGGATCACTGTCCCAGGTaGCGTGTCTTCAGGGACTGG | + |
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Preference number: 4 (lower is better) Translates to: PALGSNKRPSQDNRRRNLDHCPR*RVFRDW Trigger: CCAGTCCCTGAAGACACGCCACCTGGGACAGTGATC...CAGGTTTCTTCTTCTATTGTCTTGGGAGGGTCTCTTATTTGAACCCAGAGCTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR CCA 90 bp | GGCCAGCTCTGGGTTCAAATAAGAGACCCTCCCAAGACAATAGAAGAAGAAACCATTACTGCTGAGAGGTaGGTCCCCACTGTCACGAGC | + |
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Preference number: 4 (lower is better) Translates to: GQLWVQIRDPPKTIEEETITAER*VPTVTS Trigger: GCTCGTGACAGTGGGGACCCACCTCTCAGCAGTAAT...GGTTTCTTCTTCTATTGTCTTGGGAGGGTCTCTTATTTGAACCCAGAGCTGGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR GCA 90 bp | AATAGGCCAGCTCTGGGTTCAAATAAGAGACCCTCCCAAGACAATAGAAGAAGAGCAGGGCTCTTGCTGTaGGCACCTCACCAGTGTGTA | + |
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Preference number: 4 (lower is better) Translates to: NRPALGSNKRPSQDNRRRAGLLL*APHQCV Trigger: TACACACTGGTGAGGTGCGCACAGCAAGAGCCCTGC...TCTTCTTCTATTGTCTTGGGAGGGTCTCTTATTTGAACCCAGAGCTGGCCTATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR TCA 90 bp | GGCCAGCTCTGGGTTCAAATAAGAGACCCTCCCAAGACAATAGAAGAAGAAACCGAGAAGACTGGCGTGTaGTCATTCACATCCACCACT | + |
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Preference number: 4 (lower is better) Translates to: GQLWVQIRDPPKTIEEETEKTGV*SFTSTT Trigger: AGTGGTGGATGTGAATGATCACACGCCAGTCTTCTC...GGTTTCTTCTTCTATTGTCTTGGGAGGGTCTCTTATTTGAACCCAGAGCTGGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR TCA 90 bp | ATAGGCCAGCTCTGGGTTCAAATAAGAGACCCTCCCAAGACAATAGAAGAAGAAGGCTGCTCACAGATGTaGCAGTCACTTCTGGGGCAT | + |
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Preference number: 4 (lower is better) Translates to: IGQLWVQIRDPPKTIEEEGCSQM*QSLLGH Trigger: ATGCCCCAGAAGTGACTGTCACATCTGTGAGCAGCC...TTCTTCTTCTATTGTCTTGGGAGGGTCTCTTATTTGAACCCAGAGCTGGCCTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR TCA 90 bp | GGCCAGCTCTGGGTTCAAATAAGAGACCCTCCCAAGACAATAGAAGAAGAAACCGTTGTCGTTGGTGTCTaGCACATGAATGGACATGCG | + |
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Preference number: 4 (lower is better) Translates to: GQLWVQIRDPPKTIEEETVVVGV*HMNGHA Trigger: CGCATGTCCATTCATGTGTCAGACACCAACGACAAC...GGTTTCTTCTTCTATTGTCTTGGGAGGGTCTCTTATTTGAACCCAGAGCTGGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR CCA 90 bp | CCCAAGACAATAGAAGAAGAAACCTGGCAACATGAGAGCACTTTACACACAGGCGCATCCCCAGGAGAATaGAGAGCAGCACAAATCCTC | + |
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Preference number: 4 (lower is better) Translates to: PKTIEEETWQHESTLHTGASPGE*RAAQIL Trigger: GAGGATTTGTGCTGCTCTCCATTCTCCTGGGGATGC...GCCTGTGTGTAAAGTGCTCTCATGTTGCCAGGTTTCTTCTTCTATTGTCTTGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR CCA 90 bp | ATAGGCCAGCTCTGGGTTCAAATAAGAGACCCTCCCAAGACAATAGAAGAAGAACCGGTACCCCCTGGATaGTGTCTTCTGCTAAAGCGT | + |
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Preference number: 4 (lower is better) Translates to: IGQLWVQIRDPPKTIEEEPVPPG*CLLLKR Trigger: ACGCTTTAGCAGAAGACACCATCCAGGGGGTACCGG...TTCTTCTTCTATTGTCTTGGGAGGGTCTCTTATTTGAACCCAGAGCTGGCCTAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| 3UTR CAA 72 bp | AGGAGTTCAGCTGTAACTAAGGGAGTGTGGCATGGTTaGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTCC | + |
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Preference number: 4 (lower is better) Translates to: RSSAVTKGVWHG*CVCVCVCVCMS Trigger: GGACATACACACACACACACACACACACACACACAAACCATGCCACACTCCCTTAGTTACAGCTGAACTCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192511.2 |
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| CDS-3UTR TCA 90 bp | GGCCAGCTCTGGGTTCAAATAAGAGACCCTCCCAAGACAATAGAAGAAGAAACCCTGTGGCCTTCAGTGTaGTGTTGTACACAGACATCT | + |
|
Preference number: 4 (lower is better) Translates to: GQLWVQIRDPPKTIEEETLWPSV*CCTQTS Trigger: AGATGTCTGTGTACAACATCACACTGAAGGCCACAG...GGTTTCTTCTTCTATTGTCTTGGGAGGGTCTCTTATTTGAACCCAGAGCTGGCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR TCA 90 bp | CCCAAGACAATAGAAGAAGAAACCTGGCAACATGAGAGCACTTTACACACAGGCCAAACCTACAAAGTGTaGGGCAGGCACATCTTCCAG | + |
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Preference number: 4 (lower is better) Translates to: PKTIEEETWQHESTLHTGQTYKV*GRHIFQ Trigger: CTGGAAGATGTGCCTGCCTCACACTTTGTAGGTTTG...GCCTGTGTGTAAAGTGCTCTCATGTTGCCAGGTTTCTTCTTCTATTGTCTTGGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR GCA 90 bp | ATAGGCCAGCTCTGGGTTCAAATAAGAGACCCTCCCAAGACAATAGAAGAAGAACTAGGACATCAGGAATaGTGTTGGCCACAGCCACAG | + |
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Preference number: 4 (lower is better) Translates to: IGQLWVQIRDPPKTIEEELGHQE*CWPQPQ Trigger: CTGTGGCTGTGGCCAACAGCATTCCTGATGTCCTAG...TTCTTCTTCTATTGTCTTGGGAGGGTCTCTTATTTGAACCCAGAGCTGGCCTAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR CCA 90 bp | ATAGGCCAGCTCTGGGTTCAAATAAGAGACCCTCCCAAGACAATAGAAGAAGAAACATGCGAGTTTCAGTaGACAGGGGAGGGATTCCAC | + |
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Preference number: 4 (lower is better) Translates to: IGQLWVQIRDPPKTIEEETCEFQ*TGEGFH Trigger: GTGGAATCCCTCCCCTGTCCACTGAAACTCGCATGT...TTCTTCTTCTATTGTCTTGGGAGGGTCTCTTATTTGAACCCAGAGCTGGCCTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR TCA 90 bp | CCCAAGACAATAGAAGAAGAAACCTGGCAACATGAGAGCACTTTACACACAGGCGTAGAGGGTGATATCTaGATCATCAGGTTCACTGGG | + |
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Preference number: 4 (lower is better) Translates to: PKTIEEETWQHESTLHTGVEGDI*IIRFTG Trigger: CCCAGTGAACCTGATGATTCAGATATCACCCTCTAC...GCCTGTGTGTAAAGTGCTCTCATGTTGCCAGGTTTCTTCTTCTATTGTCTTGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR GCA 90 bp | GGCCAGCTCTGGGTTCAAATAAGAGACCCTCCCAAGACAATAGAAGAAGAAACCCCGCACCCCAGGAGCTaGATTCTCCATAATTTTTAT | + |
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Preference number: 4 (lower is better) Translates to: GQLWVQIRDPPKTIEEETPHPRS*ILHNFY Trigger: ATAAAAATTATGGAGAATGCAGCTCCTGGGGTGCGG...GGTTTCTTCTTCTATTGTCTTGGGAGGGTCTCTTATTTGAACCCAGAGCTGGCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR GCA 90 bp | CCCAAGACAATAGAAGAAGAAACCTGGCAACATGAGAGCACTTTACACACAGGCTGTGATCAGTACTTTTaGCTTGGTCAGACTGCCAGC | + |
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Preference number: 4 (lower is better) Translates to: PKTIEEETWQHESTLHTGCDQYF*LGQTAS Trigger: GCTGGCAGTCTGACCAAGGCAAAAGTACTGATCACA...GCCTGTGTGTAAAGTGCTCTCATGTTGCCAGGTTTCTTCTTCTATTGTCTTGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR TCA 90 bp | CCCAAGACAATAGAAGAAGAAACCTGGCAACATGAGAGCACTTTACACACAGGCAGAGTCTGCAGTGAGTaGAACCTCATGGGAATATGT | + |
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Preference number: 4 (lower is better) Translates to: PKTIEEETWQHESTLHTGRVCSE*NLMGIC Trigger: ACATATTCCCATGAGGTTTCACTCACTGCAGACTCT...GCCTGTGTGTAAAGTGCTCTCATGTTGCCAGGTTTCTTCTTCTATTGTCTTGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR GCA 90 bp | AATAGGCCAGCTCTGGGTTCAAATAAGAGACCCTCCCAAGACAATAGAAGAAGACCATCATCTCCACTTTaGACAACCAGGGAGAAATGG | + |
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Preference number: 4 (lower is better) Translates to: NRPALGSNKRPSQDNRRRPSSPL*TTREKW Trigger: CCATTTCTCCCTGGTTGTGCAAAGTGGAGATGATGG...TCTTCTTCTATTGTCTTGGGAGGGTCTCTTATTTGAACCCAGAGCTGGCCTATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR CCA 90 bp | GGCCAGCTCTGGGTTCAAATAAGAGACCCTCCCAAGACAATAGAAGAAGAAACCCCAGCTCATAGAAGCTaGATTGCTCATAATCTAGAC | + |
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Preference number: 4 (lower is better) Translates to: GQLWVQIRDPPKTIEEETPAHRS*IAHNLD Trigger: GTCTAGATTATGAGCAATCCAGCTTCTATGAGCTGG...GGTTTCTTCTTCTATTGTCTTGGGAGGGTCTCTTATTTGAACCCAGAGCTGGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR CCA 90 bp | AATAGGCCAGCTCTGGGTTCAAATAAGAGACCCTCCCAAGACAATAGAAGAAGATCAGTACTTTTGCCTTaGTCAGACTGCCAGCACCAT | + |
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Preference number: 4 (lower is better) Translates to: NRPALGSNKRPSQDNRRRSVLLP*SDCQHH Trigger: ATGGTGCTGGCAGTCTGACCAAGGCAAAAGTACTGA...TCTTCTTCTATTGTCTTGGGAGGGTCTCTTATTTGAACCCAGAGCTGGCCTATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR TCA 90 bp | ATAGGCCAGCTCTGGGTTCAAATAAGAGACCCTCCCAAGACAATAGAAGAAGAAGTCCCAGATCCTTGGTaGTATTTCCCACAAAAGATC | + |
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Preference number: 4 (lower is better) Translates to: IGQLWVQIRDPPKTIEEEVPDPW*YFPQKI Trigger: GATCTTTTGTGGGAAATATCACCAAGGATCTGGGAC...TTCTTCTTCTATTGTCTTGGGAGGGTCTCTTATTTGAACCCAGAGCTGGCCTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR TCA 90 bp | CCCAAGACAATAGAAGAAGAAACCTGGCAACATGAGAGCACTTTACACACAGGCCCAGGTTTCGTGCTGTaGCCAACCTGTAATAATTAT | + |
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Preference number: 4 (lower is better) Translates to: PKTIEEETWQHESTLHTGPGFVL*PTCNNY Trigger: ATAATTATTACAGGTTGGTCACAGCACGAAACCTGG...GCCTGTGTGTAAAGTGCTCTCATGTTGCCAGGTTTCTTCTTCTATTGTCTTGGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR TCA 90 bp | AATAGGCCAGCTCTGGGTTCAAATAAGAGACCCTCCCAAGACAATAGAAGAAGATTGGTGTCTGACACATaGATGGACATGCGAGTTTCA | + |
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Preference number: 4 (lower is better) Translates to: NRPALGSNKRPSQDNRRRLVSDT*MDMRVS Trigger: TGAAACTCGCATGTCCATTCATGTGTCAGACACCAA...TCTTCTTCTATTGTCTTGGGAGGGTCTCTTATTTGAACCCAGAGCTGGCCTATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR TCA 90 bp | AATAGGCCAGCTCTGGGTTCAAATAAGAGACCCTCCCAAGACAATAGAAGAAGACACAAAGAGTTTCAGTaGCACATTACTGCTGAGAGG | + |
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Preference number: 4 (lower is better) Translates to: NRPALGSNKRPSQDNRRRHKEFQ*HITAER Trigger: CCTCTCAGCAGTAATGTGTCACTGAAACTCTTTGTG...TCTTCTTCTATTGTCTTGGGAGGGTCTCTTATTTGAACCCAGAGCTGGCCTATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR CCA 90 bp | CCCAAGACAATAGAAGAAGAAACCTGGCAACATGAGAGCACTTTACACACAGGCGTCAGGGAGCTCAGATaGAATATTTGTAGAAGTTCT | + |
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Preference number: 4 (lower is better) Translates to: PKTIEEETWQHESTLHTGVRELR*NICRSS Trigger: AGAACTTCTACAAATATTCCATCTGAGCTCCCTGAC...GCCTGTGTGTAAAGTGCTCTCATGTTGCCAGGTTTCTTCTTCTATTGTCTTGGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR CCA 90 bp | ATAGGCCAGCTCTGGGTTCAAATAAGAGACCCTCCCAAGACAATAGAAGAAGAATTCTCACAGCTATCTTaGCTGATAAGTGTATCCACG | + |
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Preference number: 4 (lower is better) Translates to: IGQLWVQIRDPPKTIEEEFSQLS*LISVST Trigger: CGTGGATACACTTATCAGCCAAGATAGCTGTGAGAA...TTCTTCTTCTATTGTCTTGGGAGGGTCTCTTATTTGAACCCAGAGCTGGCCTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR TCA 90 bp | AGACATTTCATGCACACTATAGTTCTTGTGGAAATTAAGATAAAGGAAAAGGGCTCAGGGACTGTCGCTTaGTACAGGGGTAGAGAGAAG | + |
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Preference number: 4 (lower is better) Translates to: RHFMHTIVLVEIKIKEKGSGTVA*YRGREK Trigger: CTTCTCTCTACCCCTGTATCAAGCGACAGTCCCTGA...GCCCTTTTCCTTTATCTTAATTTCCACAAGAACTATAGTGTGCATGAAATGTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR TCA 90 bp | AGACATTTCATGCACACTATAGTTCTTGTGGAAATTAAGATAAAGGAAAAGGGCCCAAGCATTTGGGCCTaGGTCTTTGTCCACAGCTAC | + |
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Preference number: 4 (lower is better) Translates to: RHFMHTIVLVEIKIKEKGPSIWA*VFVHSY Trigger: GTAGCTGTGGACAAAGACTCAGGCCCAAATGCTTGG...GCCCTTTTCCTTTATCTTAATTTCCACAAGAACTATAGTGTGCATGAAATGTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR CCA 90 bp | AGACATTTCATGCACACTATAGTTCTTGTGGAAATTAAGATAAAGGAAAAGGGCAAGAGTCGGAAAAGGTaGGTGGGTTGTCGTTGGTGT | + |
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Preference number: 4 (lower is better) Translates to: RHFMHTIVLVEIKIKEKGKSRKR*VGCRWC Trigger: ACACCAACGACAACCCACCCACCTTTTCCGACTCTT...GCCCTTTTCCTTTATCTTAATTTCCACAAGAACTATAGTGTGCATGAAATGTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR CCA 90 bp | AATAGGCCAGCTCTGGGTTCAAATAAGAGACCCTCCCAAGACAATAGAAGAAGAGTGAGTGAAACCTCATaGGAATATGTTTGTAGGAAA | + |
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Preference number: 4 (lower is better) Translates to: NRPALGSNKRPSQDNRRRVSETS*EYVCRK Trigger: TTTCCTACAAACATATTCCCATGAGGTTTCACTCAC...TCTTCTTCTATTGTCTTGGGAGGGTCTCTTATTTGAACCCAGAGCTGGCCTATT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR TCA 90 bp | AGACATTTCATGCACACTATAGTTCTTGTGGAAATTAAGATAAAGGAAAAGGGCGAGCCAATAACACAGTaGCAAAGACAAGGAAAACAC | + |
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Preference number: 4 (lower is better) Translates to: RHFMHTIVLVEIKIKEKGEPITQ*QRQGKH Trigger: GTGTTTTCCTTGTCTTTGTCACTGTGTTATTGGCTC...GCCCTTTTCCTTTATCTTAATTTCCACAAGAACTATAGTGTGCATGAAATGTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS CCA 90 bp | CGCTCGTGCCGGGTCTCTGGGCTTGAGAGAAACGCCAGTCAGTGTTaGGCGGGGCTTGCTGGGAACTTGGGGCTTCACCCTTACATTCTT | + |
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Preference number: 5 (lower is better) Translates to: RSCRVSGLERNASQC*AGLAGNLGLHPYIL Trigger: AAGAATGTAAGGGTGAAGCCCCAAGTTCCCAGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCCCAGAGACCCGGCACGAGCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000192511.2 |
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| CDS-3UTR CAA 90 bp | GGCCAGCTCTGGGTTCAAATAAGAGACCCTCCCAAGACAATAGAAGAAGAAACCACCAGTTCTGGGTACTaGGTGCCATCATCTCCACTT | + |
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Preference number: 5 (lower is better) Translates to: GQLWVQIRDPPKTIEEETTSSGY*VPSSPL Trigger: AAGTGGAGATGATGGCACCAAGTACCCAGAACTGGT...GGTTTCTTCTTCTATTGTCTTGGGAGGGTCTCTTATTTGAACCCAGAGCTGGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR CAA 90 bp | GGCCAGCTCTGGGTTCAAATAAGAGACCCTCCCAAGACAATAGAAGAAGAAACCAACTCACCTGGGAACTaGGGGCTTCACCCTTACATT | + |
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Preference number: 5 (lower is better) Translates to: GQLWVQIRDPPKTIEEETNSPGN*GLHPYI Trigger: AATGTAAGGGTGAAGCCCCAAGTTCCCAGGTGAGTT...GGTTTCTTCTTCTATTGTCTTGGGAGGGTCTCTTATTTGAACCCAGAGCTGGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR CAA 90 bp | CCCAAGACAATAGAAGAAGAAACCTGGCAACATGAGAGCACTTTACACACAGGCCCCACAAAAGATCCCTaGTCTGTCTCTTCAGACACG | + |
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Preference number: 5 (lower is better) Translates to: PKTIEEETWQHESTLHTGPTKDP*SVSSDT Trigger: CGTGTCTGAAGAGACAGACAAGGGATCTTTTGTGGG...GCCTGTGTGTAAAGTGCTCTCATGTTGCCAGGTTTCTTCTTCTATTGTCTTGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR CAA 90 bp | CCAGCTCTGGGTTCAAATAAGAGACCCTCCCAAGACAATAGAAGAAGAAACCTGGCCATCATCTCCACTTaGCACAACCAGGGAGAAATG | + |
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Preference number: 5 (lower is better) Translates to: PALGSNKRPSQDNRRRNLAIIST*HNQGEM Trigger: CATTTCTCCCTGGTTGTGCAAAGTGGAGATGATGGC...CAGGTTTCTTCTTCTATTGTCTTGGGAGGGTCTCTTATTTGAACCCAGAGCTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR CAA 90 bp | ATAGGCCAGCTCTGGGTTCAAATAAGAGACCCTCCCAAGACAATAGAAGAAGAAATCAGTACTTTTGCCTaGGTCAGACTGCCAGCACCA | + |
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Preference number: 5 (lower is better) Translates to: IGQLWVQIRDPPKTIEEEISTFA*VRLPAP Trigger: TGGTGCTGGCAGTCTGACCAAGGCAAAAGTACTGAT...TTCTTCTTCTATTGTCTTGGGAGGGTCTCTTATTTGAACCCAGAGCTGGCCTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR CAA 90 bp | AATAGGCCAGCTCTGGGTTCAAATAAGAGACCCTCCCAAGACAATAGAAGAAGACCCCGAATCTTTGTCTaGGAGGTAGAAGAGAGCGAT | + |
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Preference number: 5 (lower is better) Translates to: NRPALGSNKRPSQDNRRRPRIFV*EVEESD Trigger: ATCGCTCTCTTCTACCTCCAAGACAAAGATTCGGGG...TCTTCTTCTATTGTCTTGGGAGGGTCTCTTATTTGAACCCAGAGCTGGCCTATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR CAA 90 bp | ATAGGCCAGCTCTGGGTTCAAATAAGAGACCCTCCCAAGACAATAGAAGAAGAAAGCACCATCTTGAGCTaGAACTTCCAGCTCATAGAA | + |
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Preference number: 5 (lower is better) Translates to: IGQLWVQIRDPPKTIEEESTILS*NFQLIE Trigger: TTCTATGAGCTGGAAGTTCAAGCTCAAGATGGTGCT...TTCTTCTTCTATTGTCTTGGGAGGGTCTCTTATTTGAACCCAGAGCTGGCCTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS-3UTR CAA 90 bp | AGACATTTCATGCACACTATAGTTCTTGTGGAAATTAAGATAAAGGAAAAGGGCGTGACTTGGGCATTCTaGTCACTGTCCGGGTCTTGT | + |
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Preference number: 5 (lower is better) Translates to: RHFMHTIVLVEIKIKEKGVTWAF*SLSGSC Trigger: ACAAGACCCGGACAGTGACAAGAATGCCCAAGTCAC...GCCCTTTTCCTTTATCTTAATTTCCACAAGAACTATAGTGTGCATGAAATGTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193476.2 |
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| CDS GCA 72 bp | CATTCACATCCACCACTGTCACGCGGATGCTGGCAGTaGCAGATCGGAGCGGGTCCCCGCCATCATAGGCTG | + |
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Preference number: 6 (lower is better) Translates to: HSHPPLSRGCWQ*QIGAGPRHHRL Trigger: CAGCCTATGATGGCGGGGACCCGCTCCGATCTGGCACTGCCAGCATCCGCGTGACAGTGGTGGATGTGAATG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192511.2 ENSMUST00000193476.2 |
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| CDS CCA 72 bp | CGGGTCTCTGGGCTTGAGAGAAACGCCAGTCAGTGTTaGGCGGGGCTTGCTGGGAACTTGGGGCTTCACCCT | + |
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Preference number: 6 (lower is better) Translates to: RVSGLERNASQC*AGLAGNLGLHP Trigger: AGGGTGAAGCCCCAAGTTCCCAGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCCCAGAGACCCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000192511.2 |
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| CDS CAA 72 bp | GCAGGTCACCTCACCATTCTTCCCCGAATCTTTGTCTaGGAGGTAGAAGAGAGCGATCACTGTCCCAGGTGG | + |
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Preference number: 6 (lower is better) Translates to: AGHLTILPRIFV*EVEESDHCPRW Trigger: CCACCTGGGACAGTGATCGCTCTCTTCTACCTCCAAGACAAAGATTCGGGGAAGAATGGTGAGGTGACCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192511.2 ENSMUST00000193476.2 |
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| CDS CAA 90 bp | TGGCAAAGAGCAGGTCACCTCACCATTCTTCCCCGAATCTTTGTCTaGGAGGTAGAAGAGAGCGATCACTGTCCCAGGTGGCGTGTCTTC | + |
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Preference number: 6 (lower is better) Translates to: WQRAGHLTILPRIFV*EVEESDHCPRWRVF Trigger: GAAGACACGCCACCTGGGACAGTGATCGCTCTCTTCTACCTCCAAGACAAAGATTCGGGGAAGAATGGTGAGGTGACCTGCTCTTTGCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192511.2 ENSMUST00000193476.2 |
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| CDS CCA 72 bp | ACGCCAGTCAGTGTTGGGCGGGGCTTGCTGGGAACTTaGGGCTTCACCCTTACATTCTTGAAAATCTATGGA | + |
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Preference number: 6 (lower is better) Translates to: TPVSVGRGLLGT*GFTLTFLKIYG Trigger: TCCATAGATTTTCAAGAATGTAAGGGTGAAGCCCCAAGTTCCCAGCAAGCCCCGCCCAACACTGACTGGCGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000192511.2 |
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| CDS CAA 72 bp | CAGTACTTTTGCCTTGGTCAGACTGCCAGCACCATCTaGAGCTTGAACTTCCAGCTCATAGAAGCTGGATTG | + |
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Preference number: 6 (lower is better) Translates to: QYFCLGQTASTI*SLNFQLIEAGL Trigger: CAATCCAGCTTCTATGAGCTGGAAGTTCAAGCTCAAGATGGTGCTGGCAGTCTGACCAAGGCAAAAGTACTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192511.2 ENSMUST00000193476.2 |
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| CDS CAA 72 bp | TTTTGCCTTGGTCAGACTGCCAGCACCATCTTGAGCTaGAACTTCCAGCTCATAGAAGCTGGATTGCTCATA | + |
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Preference number: 6 (lower is better) Translates to: FCLGQTASTILS*NFQLIEAGLLI Trigger: TATGAGCAATCCAGCTTCTATGAGCTGGAAGTTCAAGCTCAAGATGGTGCTGGCAGTCTGACCAAGGCAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192511.2 ENSMUST00000193476.2 |
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| CDS TCA 72 bp | ACACAGACATCTTTTCCCGGTCCAGGTTTCGTGCTGTaGCCAACCTGTAATAATTATCAATTGATCGCTCTA | + |
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Preference number: 6 (lower is better) Translates to: TQTSFPGPGFVL*PTCNNYQLIAL Trigger: TAGAGCGATCAATTGATAATTATTACAGGTTGGTCACAGCACGAAACCTGGACCGGGAAAAGATGTCTGTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192511.2 ENSMUST00000193476.2 |
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