RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PCDHGA6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000103793

Ensembl transcript IDs: ENSMUST00000195823.2

Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 72 bp TGGCCCTGGCTCCTACCAGTATCCTGGGGTGAGCCCTaGAATTCTGAGGCCTGGGTACAAGTAAGGACGAGC +
Preference number: 3 (lower is better)
Translates to: WPWLLPVSWGEP*NSEAWVQVRTS
Trigger: GCTCGTCCTTACTTGTACCCAGGCCTCAGAATTTCAGGGCTCACCCCAGGATACTGGTAGGAGCCAGGGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195823.2
3UTR TCA 72 bp ACAGCACAAAACACAGCACGGGCCGCGCAGGCAGATTaGGATTCAAAGGACAGACGGCTGTGTACAGCCCAC +
Preference number: 3 (lower is better)
Translates to: TAQNTARAAQAD*DSKDRRLCTAH
Trigger: GTGGGCTGTACACAGCCGTCTGTCCTTTGAATCTCAATCTGCCTGCGCGGCCCGTGCTGTGTTTTGTGCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195823.2
3UTR TCA 72 bp TGGCCTGGTGTTTGTCTATGGCTAGAATGTGAGGATTaGGCCAGTCCCCTGGGTACATACAGAGCCCCTTGC +
Preference number: 3 (lower is better)
Translates to: WPGVCLWLECED*ASPLGTYRAPC
Trigger: GCAAGGGGCTCTGTATGTACCCAGGGGACTGGCTCAATCCTCACATTCTAGCCATAGACAAACACCAGGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000195823.2
3UTR TCA 72 bp AGGGGTCTGGCCTGGTGTTTGTCTATGGCTAGAATGTaGGGATTGAGCCAGTCCCCTGGGTACATACAGAGC +
Preference number: 3 (lower is better)
Translates to: RGLAWCLSMARM*GLSQSPGYIQS
Trigger: GCTCTGTATGTACCCAGGGGACTGGCTCAATCCTCACATTCTAGCCATAGACAAACACCAGGCCAGACCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000195823.2
3UTR TCA 72 bp ACTGGTACCAAACCATGCTTTGGGGGAAAGCTGAACTaGAGGAGAGGCCAAAAGATTGTAATACTCTCCCTA +
Preference number: 3 (lower is better)
Translates to: TGTKPCFGGKLN*RRGQKIVILSL
Trigger: TAGGGAGAGTATTACAATCTTTTGGCCTCTCCTTCAGTTCAGCTTTCCCCCAAAGCATGGTTTGGTACCAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000195823.2
CDS CCA 90 bp CGCTCGTGCCGGGTCTCTGGGCTTGAGAGAAACGCCAGTCAGTGTTaGGCGGGGCTTGCTGATCAAGAGAGTCTTCCTCTTTGCAAAAAG +
Preference number: 5 (lower is better)
Translates to: RSCRVSGLERNASQC*AGLADQESLPLCKK
Trigger: CTTTTTGCAAAGAGGAAGACTCTCTTGATCAGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCCCAGAGACCCGGCACGAGCG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000195823.2
CDS TCA 90 bp TTTCTCCACTTCCTCGGGAATAGAGTAGCGGAGCTGCCCAGCTTCTaGGCCCCACAACCACCACAGGAGATTGAGAAGCAGGAGCAACTC +
Preference number: 5 (lower is better)
Translates to: FLHFLGNRVAELPSF*APQPPQEIEKQEQL
Trigger: GAGTTGCTCCTGCTTCTCAATCTCCTGTGGTGGTTGTGGGGCTCAGAAGCTGGGCAGCTCCGCTACTCTATTCCCGAGGAAGTGGAGAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195823.2
CDS TCA 90 bp CAGCTCCGGGTATTTGGGCCCATGGTCTTGGCTTTGCACATGTACTaGGAAGTGACTACTACCGCTGAGCTTGAAGCCCTGAATGGAGTT +
Preference number: 5 (lower is better)
Translates to: QLRVFGPMVLALHMY*EVTTTAELEALNGV
Trigger: AACTCCATTCAGGGCTTCAAGCTCAGCGGTAGTAGTCACTTCTCAGTACATGTGCAAAGCCAAGACCATGGGCCCAAATACCCGGAGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195823.2
CDS GCA 90 bp GAGCATTGTCGTTCACATCTACGACAGTTACAAGAATTCGCGCCATaGCTGTTCGGACAGGGTCACCACCATCCATGGCAACAAGGACCA +
Preference number: 5 (lower is better)
Translates to: EHCRSHLRQLQEFAP*LFGQGHHHPWQQGP
Trigger: TGGTCCTTGTTGCCATGGATGGTGGTGACCCTGTCCGAACAGGCATGGCGCGAATTCTTGTAACTGTCGTAGATGTGAACGACAATGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195823.2
CDS CCA 90 bp TCTGTAGAAAAGCCTGCACCCCATCAATACCCACGAAATGTGAAGTaGACATATTTGACACACCTTTCCTTGTGGCCTTCAGCAATCTTG +
Preference number: 5 (lower is better)
Translates to: SVEKPAPHQYPRNVK*TYLTHLSLWPSAIL
Trigger: CAAGATTGCTGAAGGCCACAAGGAAAGGTGTGTCAAATATGTCCACTTCACATTTCGTGGGTATTGATGGGGTGCAGGCTTTTCTACAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000195823.2
CDS TCA 90 bp CCCCAGTTAAAGGATTCAAGCAGAAAATCTGCGAGATTTCTTCTGTaGTCCTCACAAAGGAATATGTTATTTCTGCATGGATTCCTTCAT +
Preference number: 5 (lower is better)
Translates to: PQLKDSSRKSARFLL*SSQRNMLFLHGFLH
Trigger: ATGAAGGAATCCATGCAGAAATAACATATTCCTTTGTGAGGATCACAGAAGAAATCTCGCAGATTTTCTGCTTGAATCCTTTAACTGGGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000195823.2
CDS GCA 90 bp TCGGAAGTGGAAATTTCCCCAGTTAAAGGATTCAAGCAGAAAATCTaGGAGATTTCTTCTGTGATCCTCACAAAGGAATATGTTATTTCT +
Preference number: 5 (lower is better)
Translates to: SEVEISPVKGFKQKI*EISSVILTKEYVIS
Trigger: AGAAATAACATATTCCTTTGTGAGGATCACAGAAGAAATCTCGCAGATTTTCTGCTTGAATCCTTTAACTGGGGAAATTTCCACTTCCGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000195823.2
CDS TCA 72 bp GCCCAGCTTCTGAGCCCCACAACCACCACAGGAGATTaGGAAGCAGGAGCAACTCGCAGCAGGGCGGGCGCC +
Preference number: 6 (lower is better)
Translates to: AQLLSPTTTTGD*EAGATRSRAGA
Trigger: GGCGCCCGCCCTGCTGCGAGTTGCTCCTGCTTCTCAATCTCCTGTGGTGGTTGTGGGGCTCAGAAGCTGGGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195823.2
CDS CCA 72 bp CGGGTCTCTGGGCTTGAGAGAAACGCCAGTCAGTGTTaGGCGGGGCTTGCTGATCAAGAGAGTCTTCCTCTT +
Preference number: 6 (lower is better)
Translates to: RVSGLERNASQC*AGLADQESLPL
Trigger: AAGAGGAAGACTCTCTTGATCAGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCCCAGAGACCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195823.2
CDS CAA 90 bp GGGTCTCTGGGCTTGAGAGAAACGCCAGTCAGTGTTGGGCGGGGCTaGCTGATCAAGAGAGTCTTCCTCTTTGCAAAAAGCCGAGTCTTC +
Preference number: 6 (lower is better)
Translates to: GSLGLRETPVSVGRG*LIKRVFLFAKSRVF
Trigger: GAAGACTCGGCTTTTTGCAAAGAGGAAGACTCTCTTGATCAGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCCCAGAGACCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000195823.2
CDS GCA 72 bp CGTTCACATCTACGACAGTTACAAGAATTCGCGCCATaGCTGTTCGGACAGGGTCACCACCATCCATGGCAA +
Preference number: 6 (lower is better)
Translates to: RSHLRQLQEFAP*LFGQGHHHPWQ
Trigger: TTGCCATGGATGGTGGTGACCCTGTCCGAACAGGCATGGCGCGAATTCTTGTAACTGTCGTAGATGTGAACG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195823.2
CDS CAA 72 bp GGCTTGAGAGAAACGCCAGTCAGTGTTGGGCGGGGCTaGCTGATCAAGAGAGTCTTCCTCTTTGCAAAAAGC +
Preference number: 6 (lower is better)
Translates to: GLRETPVSVGRG*LIKRVFLFAKS
Trigger: GCTTTTTGCAAAGAGGAAGACTCTCTTGATCAGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000195823.2
CDS TCA 72 bp GTATTTGGGCCCATGGTCTTGGCTTTGCACATGTACTaGGAAGTGACTACTACCGCTGAGCTTGAAGCCCTG +
Preference number: 6 (lower is better)
Translates to: VFGPMVLALHMY*EVTTTAELEAL
Trigger: CAGGGCTTCAAGCTCAGCGGTAGTAGTCACTTCTCAGTACATGTGCAAAGCCAAGACCATGGGCCCAAATAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195823.2
CDS CAA 90 bp AAGCCTGCACCCCATCAATACCCACGAAATGTGAAGTGGACATATTaGACACACCTTTCCTTGTGGCCTTCAGCAATCTTGACTTGTGCC +
Preference number: 6 (lower is better)
Translates to: KPAPHQYPRNVKWTY*THLSLWPSAILTCA
Trigger: GGCACAAGTCAAGATTGCTGAAGGCCACAAGGAAAGGTGTGTCAAATATGTCCACTTCACATTTCGTGGGTATTGATGGGGTGCAGGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195823.2
CDS CCA 72 bp AAGCCTGCACCCCATCAATACCCACGAAATGTGAAGTaGACATATTTGACACACCTTTCCTTGTGGCCTTCA +
Preference number: 6 (lower is better)
Translates to: KPAPHQYPRNVK*TYLTHLSLWPS
Trigger: TGAAGGCCACAAGGAAAGGTGTGTCAAATATGTCCACTTCACATTTCGTGGGTATTGATGGGGTGCAGGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195823.2
CDS CAA 90 bp TCAGCAATTGCTCTGCTACCAGATGTAACCACTACTTCCGGTGCATaGTCGTTCATGTCCAAGATGGTTATTAAAACTTTTGCTCGGTCT +
Preference number: 6 (lower is better)
Translates to: SAIALLPDVTTTSGA*SFMSKMVIKTFARS
Trigger: AGACCGAGCAAAAGTTTTAATAACCATCTTGGACATGAACGACAATGCACCGGAAGTAGTGGTTACATCTGGTAGCAGAGCAATTGCTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000195823.2
CDS CAA 90 bp GAAGATCTGATTGATCTCGGGCTTCAACATCCAGCTCATAAAATCTaGAATCCTCATAGTCTAGAGTTTCGGAAGTGGAAATTTCCCCAG +
Preference number: 6 (lower is better)
Translates to: EDLIDLGLQHPAHKI*NPHSLEFRKWKFPQ
Trigger: CTGGGGAAATTTCCACTTCCGAAACTCTAGACTATGAGGATTCAAGATTTTATGAGCTGGATGTTGAAGCCCGAGATCAATCAGATCTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000195823.2
CDS CAA 72 bp ATTGATCTCGGGCTTCAACATCCAGCTCATAAAATCTaGAATCCTCATAGTCTAGAGTTTCGGAAGTGGAAA +
Preference number: 6 (lower is better)
Translates to: IDLGLQHPAHKI*NPHSLEFRKWK
Trigger: TTTCCACTTCCGAAACTCTAGACTATGAGGATTCAAGATTTTATGAGCTGGATGTTGAAGCCCGAGATCAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195823.2
CDS CAA 72 bp CATTGTCGTTCATGTCCAAGATGGTTATTAAAACTTTaGCTCGGTCTTGAAGATCTGATTGATCTCGGGCTT +
Preference number: 6 (lower is better)
Translates to: HCRSCPRWLLKL*LGLEDLIDLGL
Trigger: AAGCCCGAGATCAATCAGATCTTCAAGACCGAGCAAAAGTTTTAATAACCATCTTGGACATGAACGACAATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195823.2
CDS GCA 72 bp GAAATTTCCCCAGTTAAAGGATTCAAGCAGAAAATCTaGGAGATTTCTTCTGTGATCCTCACAAAGGAATAT +
Preference number: 6 (lower is better)
Translates to: EISPVKGFKQKI*EISSVILTKEY
Trigger: ATATTCCTTTGTGAGGATCACAGAAGAAATCTCGCAGATTTTCTGCTTGAATCCTTTAACTGGGGAAATTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000195823.2
CDS CCA 72 bp AAAATCTTGAATCCTCATAGTCTAGAGTTTCGGAAGTaGAAATTTCCCCAGTTAAAGGATTCAAGCAGAAAA +
Preference number: 6 (lower is better)
Translates to: KILNPHSLEFRK*KFPQLKDSSRK
Trigger: TTTTCTGCTTGAATCCTTTAACTGGGGAAATTTCCACTTCCGAAACTCTAGACTATGAGGATTCAAGATTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000195823.2
CDS CAA 72 bp TATACGAAGATACCTGTTCGCGATCCAGTTCTGTATTaGTCACTAACCGAAAATAATTGTCTAATGACTCTT +
Preference number: 6 (lower is better)
Translates to: YTKIPVRDPVLY*SLTENNCLMTL
Trigger: AAGAGTCATTAGACAATTATTTTCGGTTAGTGACAAATACAGAACTGGATCGCGAACAGGTATCTTCGTATA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195823.2