Pregenerated sensors for PCDHGA5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000103567

Ensembl transcript IDs: ENSMUST00000193414.2

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	CGCTCGTGCCGGGTCTCTGGGCTTGAGAGAAACGCCAGTCAGTGTTaGGCGGGGCTTGCTGAGCATCTCCGGGCTCTTCTTTGTGTGTGT	+
Preference number: 5 (lower is better) Translates to: RSCRVSGLERNASQC*AGLAEHLRALLCVC Trigger: ACACACACAAAGAAGAGCCCGGAGATGCTCAGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCCCAGAGACCCGGCACGAGCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193414.2
CDS TCA 90 bp	TATGGACGGTGCTCGAAAGTACTGGGTTTCCGCCATCCAAAGCTGTaGGGACCAGGTCATGAGCAGACTCCTTCTCACGGTCCAGGGGCT	+
Preference number: 5 (lower is better) Translates to: YGRCSKVLGFRHPKL*GPGHEQTPSHGPGA Trigger: AGCCCCTGGACCGTGAGAAGGAGTCTGCTCATGACCTGGTCCTCACAGCTTTGGATGGCGGAAACCCAGTACTTTCGAGCACCGTCCATA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193414.2
CDS TCA 90 bp	CATGAGATAGAATCTGGATTCTTCATAGTCCAGGGATTGAATAGTTaGGATTTCCCCAAGATTAGAATCGAGTTGGAAAGTTTCAGAAAT	+
Preference number: 5 (lower is better) Translates to: HEIESGFFIVQGLNS*DFPKIRIELESFRN Trigger: ATTTCTGAAACTTTCCAACTCGATTCTAATCTTGGGGAAATCTCAACTATTCAATCCCTGGACTATGAAGAATCCAGATTCTATCTCATG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193414.2
CDS TCA 72 bp	GCCCCTTTCCTGGCGCGCACAGCGTCCCCAGCAGCATaGAGAACGTCAGCAAGTCGTTGCAGATCCAGCGCC	+
Preference number: 6 (lower is better) Translates to: APFLARTASPAA*RTSASRCRSSA Trigger: GGCGCTGGATCTGCAACGACTTGCTGACGTTCTTCATGCTGCTGGGGACGCTGTGCGCGCCAGGAAAGGGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000193414.2
CDS CCA 72 bp	CGGGTCTCTGGGCTTGAGAGAAACGCCAGTCAGTGTTaGGCGGGGCTTGCTGAGCATCTCCGGGCTCTTCTT	+
Preference number: 6 (lower is better) Translates to: RVSGLERNASQC*AGLAEHLRALL Trigger: AAGAAGAGCCCGGAGATGCTCAGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCCCAGAGACCCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193414.2
CDS CAA 72 bp	GGCTTGAGAGAAACGCCAGTCAGTGTTGGGCGGGGCTaGCTGAGCATCTCCGGGCTCTTCTTTGTGTGTGTG	+
Preference number: 6 (lower is better) Translates to: GLRETPVSVGRG*LSISGLFFVCV Trigger: CACACACACAAAGAAGAGCCCGGAGATGCTCAGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193414.2
CDS TCA 72 bp	AGGACACCACTGCCACCGAAACCACTAGGTAGAGTGTaGGGTCTGAATCCTGGGGCTCTGCCAGTGTGTTGT	+
Preference number: 6 (lower is better) Translates to: RTPLPPKPLGRV*GLNPGALPVCC Trigger: ACAACACACTGGCAGAGCCCCAGGATTCAGACCTCACACTCTACCTAGTGGTTTCGGTGGCAGTGGTGTCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193414.2
CDS CAA 72 bp	GTCCAGGGGCTGTTCCAACACCAACTCTGGGTGTTTTaGCCCGTCAGATCCGCTCTTCACGTCCAGAGAGAA	+
Preference number: 6 (lower is better) Translates to: VQGLFQHQLWVF*PVRSALHVQRE Trigger: TTCTCTCTGGACGTGAAGAGCGGATCTGACGGGCAAAAACACCCAGAGTTGGTGTTGGAACAGCCCCTGGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000193414.2
CDS CAA 90 bp	GGGTCTCTGGGCTTGAGAGAAACGCCAGTCAGTGTTGGGCGGGGCTaGCTGAGCATCTCCGGGCTCTTCTTTGTGTGTGTGTATATTATG	+
Preference number: 6 (lower is better) Translates to: GSLGLRETPVSVGRG*LSISGLFFVCVYIM Trigger: CATAATATACACACACACAAAGAAGAGCCCGGAGATGCTCAGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCCCAGAGACCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193414.2
CDS TCA 72 bp	TGCTCGAAAGTACTGGGTTTCCGCCATCCAAAGCTGTaGGGACCAGGTCATGAGCAGACTCCTTCTCACGGT	+
Preference number: 6 (lower is better) Translates to: CSKVLGFRHPKL*GPGHEQTPSHG Trigger: ACCGTGAGAAGGAGTCTGCTCATGACCTGGTCCTCACAGCTTTGGATGGCGGAAACCCAGTACTTTCGAGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193414.2
CDS GCA 72 bp	GGTCTGAATCCTGGGGCTCTGCCAGTGTGTTGTGGTTaGCTAAGTCAGTCAGTACATCTGGGATGCTATCTC	+
Preference number: 6 (lower is better) Translates to: GLNPGALPVCCG*LSQSVHLGCYL Trigger: GAGATAGCATCCCAGATGTACTGACTGACTTAGGCAACCACAACACACTGGCAGAGCCCCAGGATTCAGACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193414.2
CDS CAA 90 bp	GAAATTTTGTCTTCTTCGTTGCGGAAAGAGAAGGTCAACTTTGCGTaGATTCCCTCGTCTGCATCCGTGGCGGTGAGTGTGAGGAGTCTA	+
Preference number: 6 (lower is better) Translates to: EILSSSLRKEKVNFA*IPSSASVAVSVRSL Trigger: TAGACTCCTCACACTCACCGCCACGGATGCAGACGAGGGAATCAACGCAAAGTTGACCTTCTCTTTCCGCAACGAAGAAGACAAAATTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193414.2
CDS CCA 72 bp	GATGGAAGTGGAATAGAAGGGACGAGAGAAGGTGGGTaGGTTGTCATTTATGTCGGCTACTTTCAGAGAGAT	+
Preference number: 6 (lower is better) Translates to: DGSGIEGTREGG*VVIYVGYFQRD Trigger: ATCTCTCTGAAAGTAGCCGACATAAATGACAACCCACCCACCTTCTCTCGTCCCTTCTATTCCACTTCCATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193414.2
CDS CAA 90 bp	GAGATTTCCCCAAGATTAGAATCGAGTTGGAAAGTTTCAGAAATTTaGTCTTCTTCGTTGCGGAAAGAGAAGGTCAACTTTGCGTTGATT	+
Preference number: 6 (lower is better) Translates to: EISPRLESSWKVSEI*SSSLRKEKVNFALI Trigger: AATCAACGCAAAGTTGACCTTCTCTTTCCGCAACGAAGAAGACAAAATTTCTGAAACTTTCCAACTCGATTCTAATCTTGGGGAAATCTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193414.2
CDS CAA 72 bp	TGTTATAATCTGAAGTCTCTTCTCTATCCAGTGCTCTaGTTGTTAGTAGGTGATAGTAATTATCAACTGACT	+
Preference number: 6 (lower is better) Translates to: CYNLKSLLYPVL*LLVGDSNYQLT Trigger: AGTCAGTTGATAATTACTATCACCTACTAACAACAAGAGCACTGGATAGAGAAGAGACTTCAGATTATAACA 35% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193414.2