Pregenerated sensors for PCDHGA4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000103677Ensembl transcript IDs: ENSMUST00000194418.2
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS TCA 90 bp | ACAAAATGTGAGGCAGGCAAGGATGACAACCCATTACCTGCAGCCTaGAGCAGGCGAGTTGAGTGCCAGCGACGGAGCCTGTGTATCAGC | + |
Preference number: 5 (lower is better) Translates to: TKCEAGKDDNPLPAA*SRRVECQRRSLCIS Trigger: GCTGATACACAGGCTCCGTCGCTGGCACTCAACTCGCCTGCTTCAGGCTGCAGGTAATGGGTTGTCATCCTTGCCTGCCTCACATTTTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194418.2 |
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CDS GCA 90 bp | GACAAGGCCGTTCTCTCCAGAGTCGCTGTCGTGCACGTTGAAGAGTaGAATCACTGTGCCTGGGGAAGAAGCTTCCTGGATAGAGCTGGT | + |
Preference number: 5 (lower is better) Translates to: DKAVLSRVAVVHVEE*NHCAWGRSFLDRAG Trigger: ACCAGCTCTATCCAGGAAGCTTCTTCCCCAGGCACAGTGATTGCACTCTTCAACGTGCACGACAGCGACTCTGGAGAGAACGGCCTTGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194418.2 |
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CDS GCA 90 bp | ACCGGATCTGTTCCGCGCGGATGTCGCATAGGGATCCAAGGAAAATaGAGATCCAGATTAGTCCCCTGCGGTCTGATTTGTAAGGAGCCG | + |
Preference number: 5 (lower is better) Translates to: TGSVPRGCRIGIQGK*RSRLVPCGLICKEP Trigger: CGGCTCCTTACAAATCAGACCGCAGGGGACTAATCTGGATCTGCATTTTCCTTGGATCCCTATGCGACATCCGCGCGGAACAGATCCGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194418.2 |
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CDS GCA 90 bp | GGAATAGAACAAGTGACAAGGCCGTTCTCTCCAGAGTCGCTGTCGTaGACGTTGAAGAGTGCAATCACTGTGCCTGGGGAAGAAGCTTCC | + |
Preference number: 5 (lower is better) Translates to: GIEQVTRPFSPESLS*TLKSAITVPGEEAS Trigger: GGAAGCTTCTTCCCCAGGCACAGTGATTGCACTCTTCAACGTGCACGACAGCGACTCTGGAGAGAACGGCCTTGTCACTTGTTCTATTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194418.2 |
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CDS CCA 90 bp | CCCAACACTGTAATGTCCCCAGTCAGAGAATTCAGCTGGAAGAGCTaGGAGATTTTCTCTCTTACGTTCCGGAAAGAATACGTCACTTCT | + |
Preference number: 5 (lower is better) Translates to: PNTVMSPVREFSWKS*EIFSLTFRKEYVTS Trigger: AGAAGTGACGTATTCTTTCCGGAACGTAAGAGAGAAAATCTCCCAGCTCTTCCAGCTGAATTCTCTGACTGGGGACATTACAGTGTTGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194418.2 |
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CDS CCA 90 bp | ATGATAATTTCCATAGGTCTTTTCCAGTCTGAATGGAAGATTATCTaGAATAGAACAAGTGACAAGGCCGTTCTCTCCAGAGTCGCTGTC | + |
Preference number: 5 (lower is better) Translates to: MIISIGLFQSEWKII*NRTSDKAVLSRVAV Trigger: GACAGCGACTCTGGAGAGAACGGCCTTGTCACTTGTTCTATTCCAGATAATCTTCCATTCAGACTGGAAAAGACCTATGGAAATTATCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194418.2 |
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CDS GCA 72 bp | CAAGTGACAAGGCCGTTCTCTCCAGAGTCGCTGTCGTaGACGTTGAAGAGTGCAATCACTGTGCCTGGGGAA | + |
Preference number: 6 (lower is better) Translates to: QVTRPFSPESLS*TLKSAITVPGE Trigger: TTCCCCAGGCACAGTGATTGCACTCTTCAACGTGCACGACAGCGACTCTGGAGAGAACGGCCTTGTCACTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194418.2 |
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CDS CCA 72 bp | CATTGTCGTTGGTGTCCACGAGTGTTACTTGAATTGTaGCAGTACCAGAGCGAACCGGGTCGCCTCCGTCGA | + |
Preference number: 6 (lower is better) Translates to: HCRWCPRVLLEL*QYQSEPGRLRR Trigger: TCGACGGAGGCGACCCGGTTCGCTCTGGTACTGCCACAATTCAAGTAACACTCGTGGACACCAACGACAATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194418.2 |
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CDS CAA 72 bp | GAGCATTGTCGTTGGTGTCCACGAGTGTTACTTGAATaGTGGCAGTACCAGAGCGAACCGGGTCGCCTCCGT | + |
Preference number: 6 (lower is better) Translates to: EHCRWCPRVLLE*WQYQSEPGRLR Trigger: ACGGAGGCGACCCGGTTCGCTCTGGTACTGCCACAATTCAAGTAACACTCGTGGACACCAACGACAATGCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194418.2 |
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CDS GCA 72 bp | GTTCTCTCCAGAGTCGCTGTCGTGCACGTTGAAGAGTaGAATCACTGTGCCTGGGGAAGAAGCTTCCTGGAT | + |
Preference number: 6 (lower is better) Translates to: VLSRVAVVHVEE*NHCAWGRSFLD Trigger: ATCCAGGAAGCTTCTTCCCCAGGCACAGTGATTGCACTCTTCAACGTGCACGACAGCGACTCTGGAGAGAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194418.2 |
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CDS CCA 72 bp | GCTGTCGTGCACGTTGAAGAGTGCAATCACTGTGCCTaGGGAAGAAGCTTCCTGGATAGAGCTGGTGAGAGA | + |
Preference number: 6 (lower is better) Translates to: AVVHVEECNHCA*GRSFLDRAGER Trigger: TCTCTCACCAGCTCTATCCAGGAAGCTTCTTCCCCAGGCACAGTGATTGCACTCTTCAACGTGCACGACAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194418.2 |
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CDS CAA 90 bp | CTGAGTGAATACAGGAGCATTGTCGTTGGTGTCCACGAGTGTTACTaGAATTGTGGCAGTACCAGAGCGAACCGGGTCGCCTCCGTCGAA | + |
Preference number: 6 (lower is better) Translates to: LSEYRSIVVGVHECY*NCGSTRANRVASVE Trigger: TTCGACGGAGGCGACCCGGTTCGCTCTGGTACTGCCACAATTCAAGTAACACTCGTGGACACCAACGACAATGCTCCTGTATTCACTCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194418.2 |
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CDS CAA 90 bp | GAACAAGTGACAAGGCCGTTCTCTCCAGAGTCGCTGTCGTGCACGTaGAAGAGTGCAATCACTGTGCCTGGGGAAGAAGCTTCCTGGATA | + |
Preference number: 6 (lower is better) Translates to: EQVTRPFSPESLSCT*KSAITVPGEEASWI Trigger: TATCCAGGAAGCTTCTTCCCCAGGCACAGTGATTGCACTCTTCAACGTGCACGACAGCGACTCTGGAGAGAACGGCCTTGTCACTTGTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194418.2 |
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CDS CAA 90 bp | GGGTCTCTGGGCTTGAGAGAAACGCCAGTCAGTGTTGGGCGGGGCTaGCTGCAGACTGGAGTCTCCTTTTATTTCAAGCAAGTCTTGAGA | + |
Preference number: 6 (lower is better) Translates to: GSLGLRETPVSVGRG*LQTGVSFYFKQVLR Trigger: TCTCAAGACTTGCTTGAAATAAAAGGAGACTCCAGTCTGCAGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCCCAGAGACCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194418.2 |
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CDS GCA 72 bp | GTTCCGCGCGGATGTCGCATAGGGATCCAAGGAAAATaGAGATCCAGATTAGTCCCCTGCGGTCTGATTTGT | + |
Preference number: 6 (lower is better) Translates to: VPRGCRIGIQGK*RSRLVPCGLIC Trigger: ACAAATCAGACCGCAGGGGACTAATCTGGATCTGCATTTTCCTTGGATCCCTATGCGACATCCGCGCGGAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194418.2 |
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CDS CAA 90 bp | TCCTCACTTTATCCTCTAGGAGAATCTCCAGATTTGCGGTACACTTaGGGGATCTGTCACAGAGCCCTTCTCTGTCGACCCTCCCTGCTG | + |
Preference number: 6 (lower is better) Translates to: SSLYPLGESPDLRYT*GICHRALLCRPSLL Trigger: CAGCAGGGAGGGTCGACAGAGAAGGGCTCTGTGACAGATCCCCAAAGTGTACCGCAAATCTGGAGATTCTCCTAGAGGATAAAGTGAGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194418.2 |
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CDS TCA 72 bp | TGCAGACTGGAGTCTCCTTTTATTTCAAGCAAGTCTTaGGATACCAGGAGAGGATCACTCTTCCCACAGCTC | + |
Preference number: 6 (lower is better) Translates to: CRLESPFISSKS*DTRRGSLFPQL Trigger: GAGCTGTGGGAAGAGTGATCCTCTCCTGGTATCTCAAGACTTGCTTGAAATAAAAGGAGACTCCAGTCTGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194418.2 |
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CDS CAA 72 bp | CTGCAGACTGGAGTCTCCTTTTATTTCAAGCAAGTCTaGAGATACCAGGAGAGGATCACTCTTCCCACAGCT | + |
Preference number: 6 (lower is better) Translates to: LQTGVSFYFKQV*RYQERITLPTA Trigger: AGCTGTGGGAAGAGTGATCCTCTCCTGGTATCTCAAGACTTGCTTGAAATAAAAGGAGACTCCAGTCTGCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194418.2 |
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CDS CCA 72 bp | GTAATGTCCCCAGTCAGAGAATTCAGCTGGAAGAGCTaGGAGATTTTCTCTCTTACGTTCCGGAAAGAATAC | + |
Preference number: 6 (lower is better) Translates to: VMSPVREFSWKS*EIFSLTFRKEY Trigger: GTATTCTTTCCGGAACGTAAGAGAGAAAATCTCCCAGCTCTTCCAGCTGAATTCTCTGACTGGGGACATTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194418.2 |
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CDS CCA 72 bp | CCGATGATAATTTCCATAGGTCTTTTCCAGTCTGAATaGAAGATTATCTGGAATAGAACAAGTGACAAGGCC | + |
Preference number: 6 (lower is better) Translates to: PMIISIGLFQSE*KIIWNRTSDKA Trigger: GGCCTTGTCACTTGTTCTATTCCAGATAATCTTCCATTCAGACTGGAAAAGACCTATGGAAATTATCATCGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194418.2 |