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Pregenerated sensors for PCDHGA4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000103677

Ensembl transcript IDs: ENSMUST00000194418.2

Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp ACAAAATGTGAGGCAGGCAAGGATGACAACCCATTACCTGCAGCCTaGAGCAGGCGAGTTGAGTGCCAGCGACGGAGCCTGTGTATCAGC +
Preference number: 5 (lower is better)
Translates to: TKCEAGKDDNPLPAA*SRRVECQRRSLCIS
Trigger: GCTGATACACAGGCTCCGTCGCTGGCACTCAACTCGCCTGCTTCAGGCTGCAGGTAATGGGTTGTCATCCTTGCCTGCCTCACATTTTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194418.2
CDS GCA 90 bp GACAAGGCCGTTCTCTCCAGAGTCGCTGTCGTGCACGTTGAAGAGTaGAATCACTGTGCCTGGGGAAGAAGCTTCCTGGATAGAGCTGGT +
Preference number: 5 (lower is better)
Translates to: DKAVLSRVAVVHVEE*NHCAWGRSFLDRAG
Trigger: ACCAGCTCTATCCAGGAAGCTTCTTCCCCAGGCACAGTGATTGCACTCTTCAACGTGCACGACAGCGACTCTGGAGAGAACGGCCTTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194418.2
CDS GCA 90 bp ACCGGATCTGTTCCGCGCGGATGTCGCATAGGGATCCAAGGAAAATaGAGATCCAGATTAGTCCCCTGCGGTCTGATTTGTAAGGAGCCG +
Preference number: 5 (lower is better)
Translates to: TGSVPRGCRIGIQGK*RSRLVPCGLICKEP
Trigger: CGGCTCCTTACAAATCAGACCGCAGGGGACTAATCTGGATCTGCATTTTCCTTGGATCCCTATGCGACATCCGCGCGGAACAGATCCGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194418.2
CDS GCA 90 bp GGAATAGAACAAGTGACAAGGCCGTTCTCTCCAGAGTCGCTGTCGTaGACGTTGAAGAGTGCAATCACTGTGCCTGGGGAAGAAGCTTCC +
Preference number: 5 (lower is better)
Translates to: GIEQVTRPFSPESLS*TLKSAITVPGEEAS
Trigger: GGAAGCTTCTTCCCCAGGCACAGTGATTGCACTCTTCAACGTGCACGACAGCGACTCTGGAGAGAACGGCCTTGTCACTTGTTCTATTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194418.2
CDS CCA 90 bp CCCAACACTGTAATGTCCCCAGTCAGAGAATTCAGCTGGAAGAGCTaGGAGATTTTCTCTCTTACGTTCCGGAAAGAATACGTCACTTCT +
Preference number: 5 (lower is better)
Translates to: PNTVMSPVREFSWKS*EIFSLTFRKEYVTS
Trigger: AGAAGTGACGTATTCTTTCCGGAACGTAAGAGAGAAAATCTCCCAGCTCTTCCAGCTGAATTCTCTGACTGGGGACATTACAGTGTTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194418.2
CDS CCA 90 bp ATGATAATTTCCATAGGTCTTTTCCAGTCTGAATGGAAGATTATCTaGAATAGAACAAGTGACAAGGCCGTTCTCTCCAGAGTCGCTGTC +
Preference number: 5 (lower is better)
Translates to: MIISIGLFQSEWKII*NRTSDKAVLSRVAV
Trigger: GACAGCGACTCTGGAGAGAACGGCCTTGTCACTTGTTCTATTCCAGATAATCTTCCATTCAGACTGGAAAAGACCTATGGAAATTATCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194418.2
CDS GCA 72 bp CAAGTGACAAGGCCGTTCTCTCCAGAGTCGCTGTCGTaGACGTTGAAGAGTGCAATCACTGTGCCTGGGGAA +
Preference number: 6 (lower is better)
Translates to: QVTRPFSPESLS*TLKSAITVPGE
Trigger: TTCCCCAGGCACAGTGATTGCACTCTTCAACGTGCACGACAGCGACTCTGGAGAGAACGGCCTTGTCACTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194418.2
CDS CCA 72 bp CATTGTCGTTGGTGTCCACGAGTGTTACTTGAATTGTaGCAGTACCAGAGCGAACCGGGTCGCCTCCGTCGA +
Preference number: 6 (lower is better)
Translates to: HCRWCPRVLLEL*QYQSEPGRLRR
Trigger: TCGACGGAGGCGACCCGGTTCGCTCTGGTACTGCCACAATTCAAGTAACACTCGTGGACACCAACGACAATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194418.2
CDS CAA 72 bp GAGCATTGTCGTTGGTGTCCACGAGTGTTACTTGAATaGTGGCAGTACCAGAGCGAACCGGGTCGCCTCCGT +
Preference number: 6 (lower is better)
Translates to: EHCRWCPRVLLE*WQYQSEPGRLR
Trigger: ACGGAGGCGACCCGGTTCGCTCTGGTACTGCCACAATTCAAGTAACACTCGTGGACACCAACGACAATGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194418.2
CDS GCA 72 bp GTTCTCTCCAGAGTCGCTGTCGTGCACGTTGAAGAGTaGAATCACTGTGCCTGGGGAAGAAGCTTCCTGGAT +
Preference number: 6 (lower is better)
Translates to: VLSRVAVVHVEE*NHCAWGRSFLD
Trigger: ATCCAGGAAGCTTCTTCCCCAGGCACAGTGATTGCACTCTTCAACGTGCACGACAGCGACTCTGGAGAGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194418.2
CDS CCA 72 bp GCTGTCGTGCACGTTGAAGAGTGCAATCACTGTGCCTaGGGAAGAAGCTTCCTGGATAGAGCTGGTGAGAGA +
Preference number: 6 (lower is better)
Translates to: AVVHVEECNHCA*GRSFLDRAGER
Trigger: TCTCTCACCAGCTCTATCCAGGAAGCTTCTTCCCCAGGCACAGTGATTGCACTCTTCAACGTGCACGACAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194418.2
CDS CAA 90 bp CTGAGTGAATACAGGAGCATTGTCGTTGGTGTCCACGAGTGTTACTaGAATTGTGGCAGTACCAGAGCGAACCGGGTCGCCTCCGTCGAA +
Preference number: 6 (lower is better)
Translates to: LSEYRSIVVGVHECY*NCGSTRANRVASVE
Trigger: TTCGACGGAGGCGACCCGGTTCGCTCTGGTACTGCCACAATTCAAGTAACACTCGTGGACACCAACGACAATGCTCCTGTATTCACTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194418.2
CDS CAA 90 bp GAACAAGTGACAAGGCCGTTCTCTCCAGAGTCGCTGTCGTGCACGTaGAAGAGTGCAATCACTGTGCCTGGGGAAGAAGCTTCCTGGATA +
Preference number: 6 (lower is better)
Translates to: EQVTRPFSPESLSCT*KSAITVPGEEASWI
Trigger: TATCCAGGAAGCTTCTTCCCCAGGCACAGTGATTGCACTCTTCAACGTGCACGACAGCGACTCTGGAGAGAACGGCCTTGTCACTTGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194418.2
CDS CAA 90 bp GGGTCTCTGGGCTTGAGAGAAACGCCAGTCAGTGTTGGGCGGGGCTaGCTGCAGACTGGAGTCTCCTTTTATTTCAAGCAAGTCTTGAGA +
Preference number: 6 (lower is better)
Translates to: GSLGLRETPVSVGRG*LQTGVSFYFKQVLR
Trigger: TCTCAAGACTTGCTTGAAATAAAAGGAGACTCCAGTCTGCAGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCCCAGAGACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194418.2
CDS GCA 72 bp GTTCCGCGCGGATGTCGCATAGGGATCCAAGGAAAATaGAGATCCAGATTAGTCCCCTGCGGTCTGATTTGT +
Preference number: 6 (lower is better)
Translates to: VPRGCRIGIQGK*RSRLVPCGLIC
Trigger: ACAAATCAGACCGCAGGGGACTAATCTGGATCTGCATTTTCCTTGGATCCCTATGCGACATCCGCGCGGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194418.2
CDS CAA 90 bp TCCTCACTTTATCCTCTAGGAGAATCTCCAGATTTGCGGTACACTTaGGGGATCTGTCACAGAGCCCTTCTCTGTCGACCCTCCCTGCTG +
Preference number: 6 (lower is better)
Translates to: SSLYPLGESPDLRYT*GICHRALLCRPSLL
Trigger: CAGCAGGGAGGGTCGACAGAGAAGGGCTCTGTGACAGATCCCCAAAGTGTACCGCAAATCTGGAGATTCTCCTAGAGGATAAAGTGAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194418.2
CDS TCA 72 bp TGCAGACTGGAGTCTCCTTTTATTTCAAGCAAGTCTTaGGATACCAGGAGAGGATCACTCTTCCCACAGCTC +
Preference number: 6 (lower is better)
Translates to: CRLESPFISSKS*DTRRGSLFPQL
Trigger: GAGCTGTGGGAAGAGTGATCCTCTCCTGGTATCTCAAGACTTGCTTGAAATAAAAGGAGACTCCAGTCTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194418.2
CDS CAA 72 bp CTGCAGACTGGAGTCTCCTTTTATTTCAAGCAAGTCTaGAGATACCAGGAGAGGATCACTCTTCCCACAGCT +
Preference number: 6 (lower is better)
Translates to: LQTGVSFYFKQV*RYQERITLPTA
Trigger: AGCTGTGGGAAGAGTGATCCTCTCCTGGTATCTCAAGACTTGCTTGAAATAAAAGGAGACTCCAGTCTGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194418.2
CDS CCA 72 bp GTAATGTCCCCAGTCAGAGAATTCAGCTGGAAGAGCTaGGAGATTTTCTCTCTTACGTTCCGGAAAGAATAC +
Preference number: 6 (lower is better)
Translates to: VMSPVREFSWKS*EIFSLTFRKEY
Trigger: GTATTCTTTCCGGAACGTAAGAGAGAAAATCTCCCAGCTCTTCCAGCTGAATTCTCTGACTGGGGACATTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194418.2
CDS CCA 72 bp CCGATGATAATTTCCATAGGTCTTTTCCAGTCTGAATaGAAGATTATCTGGAATAGAACAAGTGACAAGGCC +
Preference number: 6 (lower is better)
Translates to: PMIISIGLFQSE*KIIWNRTSDKA
Trigger: GGCCTTGTCACTTGTTCTATTCCAGATAATCTTCCATTCAGACTGGAAAAGACCTATGGAAATTATCATCGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194418.2