Pregenerated sensors for PCDHGA3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000104346

Ensembl transcript IDs: ENSMUST00000073447.8

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	GACTTGCCCGTTCTGGCCAGAATCTCGGTCGTGTACATTGATAAGTaGGATTTCTCTTCCAGCGGGAGCCTCCTCTGGGACCGAGCCTGT	+
Preference number: 5 (lower is better) Translates to: DLPVLARISVVYIDK*DFSSSGSLLWDRAC Trigger: ACAGGCTCGGTCCCAGAGGAGGCTCCCGCTGGAAGAGAAATCGCACTTATCAATGTACACGACCGAGATTCTGGCCAGAACGGGCAAGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073447.8
CDS TCA 90 bp	TGCACAACTTGCTGGTGTGCACAGGGTCTCCGCCATCAGAGGCAATaGGATCAAGCTGATGGACTGCCTTTTTCTCACGATCCAGGGCTC	+
Preference number: 5 (lower is better) Translates to: CTTCWCAQGLRHQRQ*DQADGLPFSHDPGL Trigger: GAGCCCTGGATCGTGAGAAAAAGGCAGTCCATCAGCTTGATCTCATTGCCTCTGATGGCGGAGACCCTGTGCACACCAGCAAGTTGTGCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073447.8
CDS TCA 72 bp	GCAGCCCCTGAAGTGTGTCCTCAGCCAGTGAGTAAGTaGCTTGTGCATTCTTGTCAGTGTCTGGGTCCTGTG	+
Preference number: 6 (lower is better) Translates to: AAPEVCPQPVSK*LVHSCQCLGPV Trigger: CACAGGACCCAGACACTGACAAGAATGCACAAGTCACTTACTCACTGGCTGAGGACACACTTCAGGGGCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073447.8
CDS GCA 72 bp	TCCGAGACTATCACCTGGATGCACAACTTGCTGGTGTaGACAGGGTCTCCGCCATCAGAGGCAATGAGATCA	+
Preference number: 6 (lower is better) Translates to: SETITWMHNLLV*TGSPPSEAMRS Trigger: TGATCTCATTGCCTCTGATGGCGGAGACCCTGTGCACACCAGCAAGTTGTGCATCCAGGTGATAGTCTCGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073447.8
CDS GCA 72 bp	GTGGGTTGTCATTTGCATCCGAGACTATCACCTGGATaGACAACTTGCTGGTGTGCACAGGGTCTCCGCCAT	+
Preference number: 6 (lower is better) Translates to: VGCHLHPRLSPG*TTCWCAQGLRH Trigger: ATGGCGGAGACCCTGTGCACACCAGCAAGTTGTGCATCCAGGTGATAGTCTCGGATGCAAATGACAACCCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073447.8
CDS GCA 72 bp	GTTCTGGCCAGAATCTCGGTCGTGTACATTGATAAGTaGGATTTCTCTTCCAGCGGGAGCCTCCTCTGGGAC	+
Preference number: 6 (lower is better) Translates to: VLARISVVYIDK*DFSSSGSLLWD Trigger: GTCCCAGAGGAGGCTCCCGCTGGAAGAGAAATCGCACTTATCAATGTACACGACCGAGATTCTGGCCAGAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073447.8
CDS CCA 72 bp	ACAGGTGGGTTGTCATTTGCATCCGAGACTATCACCTaGATGCACAACTTGCTGGTGTGCACAGGGTCTCCG	+
Preference number: 6 (lower is better) Translates to: TGGLSFASETIT*MHNLLVCTGSP Trigger: CGGAGACCCTGTGCACACCAGCAAGTTGTGCATCCAGGTGATAGTCTCGGATGCAAATGACAACCCACCTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073447.8
CDS CAA 72 bp	TCATTTGCATCCGAGACTATCACCTGGATGCACAACTaGCTGGTGTGCACAGGGTCTCCGCCATCAGAGGCA	+
Preference number: 6 (lower is better) Translates to: SFASETITWMHN*LVCTGSPPSEA Trigger: TGCCTCTGATGGCGGAGACCCTGTGCACACCAGCAAGTTGTGCATCCAGGTGATAGTCTCGGATGCAAATGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073447.8
CDS CAA 72 bp	ACTTGCCCGTTCTGGCCAGAATCTCGGTCGTGTACATaGATAAGTGCGATTTCTCTTCCAGCGGGAGCCTCC	+
Preference number: 6 (lower is better) Translates to: TCPFWPESRSCT*ISAISLPAGAS Trigger: GGAGGCTCCCGCTGGAAGAGAAATCGCACTTATCAATGTACACGACCGAGATTCTGGCCAGAACGGGCAAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073447.8
CDS CAA 90 bp	GGTGGGTTGTCATTTGCATCCGAGACTATCACCTGGATGCACAACTaGCTGGTGTGCACAGGGTCTCCGCCATCAGAGGCAATGAGATCA	+
Preference number: 6 (lower is better) Translates to: GGLSFASETITWMHN*LVCTGSPPSEAMRS Trigger: TGATCTCATTGCCTCTGATGGCGGAGACCCTGTGCACACCAGCAAGTTGTGCATCCAGGTGATAGTCTCGGATGCAAATGACAACCCACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073447.8
CDS CAA 90 bp	AAAACTGTGACTTGCCCGTTCTGGCCAGAATCTCGGTCGTGTACATaGATAAGTGCGATTTCTCTTCCAGCGGGAGCCTCCTCTGGGACC	+
Preference number: 6 (lower is better) Translates to: KTVTCPFWPESRSCT*ISAISLPAGASSGT Trigger: GGTCCCAGAGGAGGCTCCCGCTGGAAGAGAAATCGCACTTATCAATGTACACGACCGAGATTCTGGCCAGAACGGGCAAGTCACAGTTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073447.8
CDS TCA 72 bp	GCTCCAGCACTAGCTCTGGGTACTTGGCGTCATCGATaGCGCTGTTCACAGCCAAGGAGAAATAGTCATTGG	+
Preference number: 6 (lower is better) Translates to: APALALGTWRHR*RCSQPRRNSHW Trigger: CCAATGACTATTTCTCCTTGGCTGTGAACAGCGTCATCGATGACGCCAAGTACCCAGAGCTAGTGCTGGAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073447.8
CDS TCA 72 bp	TGCTGGTGTGCACAGGGTCTCCGCCATCAGAGGCAATaGGATCAAGCTGATGGACTGCCTTTTTCTCACGAT	+
Preference number: 6 (lower is better) Translates to: CWCAQGLRHQRQ*DQADGLPFSHD Trigger: ATCGTGAGAAAAAGGCAGTCCATCAGCTTGATCTCATTGCCTCTGATGGCGGAGACCCTGTGCACACCAGCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073447.8
CDS TCA 72 bp	ACAATGGTGGACTTCCCCCATCCGTGGCTCTTAGACTaGTATTATATTGGGACACCTCCTCATGATCCAAAG	+
Preference number: 6 (lower is better) Translates to: TMVDFPHPWLLD*YYIGTPPHDPK Trigger: CTTTGGATCATGAGGAGGTGTCCCAATATAATATCAGTCTAAGAGCCACGGATGGGGGAAGTCCACCATTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073447.8
CDS CCA 72 bp	AGATTTCCTAGGACAAAAACTGTGACTTGCCCGTTCTaGCCAGAATCTCGGTCGTGTACATTGATAAGTGCG	+
Preference number: 6 (lower is better) Translates to: RFPRTKTVTCPF*PESRSCTLISA Trigger: CGCACTTATCAATGTACACGACCGAGATTCTGGCCAGAACGGGCAAGTCACAGTTTTTGTCCTAGGAAATCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073447.8