Pregenerated sensors for PCDHGA2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000103332

Ensembl transcript IDs: ENSMUST00000193869.2

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	GTAGCGGATCTGTCCAGCTTTGGCCTCCCACAGGGCGGCCCAAAGTaGGCACAGGAGGACCAGCATTCTGCTCTGGGGGAGTTTCTGCAG	+
Preference number: 5 (lower is better) Translates to: VADLSSFGLPQGGPK*AQEDQHSALGEFLQ Trigger: CTGCAGAAACTCCCCCAGAGCAGAATGCTGGTCCTCCTGTGCGCACTTTGGGCCGCCCTGTGGGAGGCCAAAGCTGGACAGATCCGCTAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000193869.2
CDS GCA 90 bp	TTGAAAGGAAGCATTTCGGGAAGTGAACACGTGACGACAGCATTCTaGCCAGAGTCCCTATCATGCACATTGAAGAGTGCAATTACCGTT	+
Preference number: 5 (lower is better) Translates to: LKGSISGSEHVTTAF*PESLSCTLKSAITV Trigger: AACGGTAATTGCACTCTTCAATGTGCATGATAGGGACTCTGGGCAGAATGCTGTCGTCACGTGTTCACTTCCCGAAATGCTTCCTTTCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193869.2
CDS GCA 72 bp	CTGTCCAGCTTTGGCCTCCCACAGGGCGGCCCAAAGTaGGCACAGGAGGACCAGCATTCTGCTCTGGGGGAG	+
Preference number: 6 (lower is better) Translates to: LSSFGLPQGGPK*AQEDQHSALGE Trigger: CTCCCCCAGAGCAGAATGCTGGTCCTCCTGTGCGCACTTTGGGCCGCCCTGTGGGAGGCCAAAGCTGGACAG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000193869.2
CDS CCA 72 bp	CCGTTCCCAGAGGAGCGTCTTCAGGCACAGAAGCAGTaGCAGATGTCATGTAAAATTCCGGGGCATTGTCGT	+
Preference number: 6 (lower is better) Translates to: PFPEERLQAQKQ*QMSCKIPGHCR Trigger: ACGACAATGCCCCGGAATTTTACATGACATCTGCCACTGCTTCTGTGCCTGAAGACGCTCCTCTGGGAACGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000193869.2
CDS GCA 72 bp	ATACTCAGCCTGTGTAAAAGCAGGAGCGTTATCGTTTaGATCCAAGACCTTCACACGGATGCGGCAGGTGCC	+
Preference number: 6 (lower is better) Translates to: ILSLCKSRSVIV*IQDLHTDAAGA Trigger: GGCACCTGCCGCATCCGTGTGAAGGTCTTGGATGCAAACGATAACGCTCCTGCTTTTACACAGGCTGAGTAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193869.2
CDS CCA 72 bp	CACCTGCAGCAAAAGGTGTGCATCTGTGGACAGAGATaGGCTCCCTCCATCTTTGGCGCTTACAGTGATGTT	+
Preference number: 6 (lower is better) Translates to: HLQQKVCICGQR*APSIFGAYSDV Trigger: AACATCACTGTAAGCGCCAAAGATGGAGGGAGCCCATCTCTGTCCACAGATGCACACCTTTTGCTGCAGGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193869.2
CDS TCA 72 bp	ATTACTTTCGTCCTAGTCAGAAGGCCTGGGCCATCCTaGGCCTCAATATCGATTTCATGGAATTTAGCTTTC	+
Preference number: 6 (lower is better) Translates to: ITFVLVRRPGPS*ASISISWNLAF Trigger: GAAAGCTAAATTCCATGAAATCGATATTGAGGCTCAGGATGGCCCAGGCCTTCTGACTAGGACGAAAGTAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193869.2

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