Pregenerated sensors for PCDHGA12 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000102428Ensembl transcript IDs: ENSMUST00000044851.8
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | TCTGGCCACAAGGGGGCGGCCTGGGGGCCTGGGCAGTaGCCTTCTGAGAAGAAATGGCACCTGGTAAGGTGG | + |
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Preference number: 3 (lower is better) Translates to: SGHKGAAWGPGQ*PSEKKWHLVRW Trigger: CCACCTTACCAGGTGCCATTTCTTCTCAGAAGGCCACTGCCCAGGCCCCCAGGCCGCCCCCTTGTGGCCAGA 65% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| 3UTR CCA 72 bp | AGAGAAGTCAGTACAGGGAGGGGTCGCCGCAGCGTGTaGACACAGCACAAAACACAGCACGGGCCGCGCAGG | + |
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Preference number: 3 (lower is better) Translates to: REVSTGRGRRSV*TQHKTQHGPRR Trigger: CCTGCGCGGCCCGTGCTGTGTTTTGTGCTGTGTCCACACGCTGCGGCGACCCCTCCCTGTACTGACTTCTCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| 3UTR CCA 72 bp | GCTTGGGCACGTGTTTCTGTTTCCCAACGGGGAGCATaGCCCTGGCTCCTACCAGTATCCTGGGGTGAGCCC | + |
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Preference number: 3 (lower is better) Translates to: AWARVSVSQRGA*PWLLPVSWGEP Trigger: GGGCTCACCCCAGGATACTGGTAGGAGCCAGGGCCATGCTCCCCGTTGGGAAACAGAAACACGTGCCCAAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| 3UTR CCA 72 bp | GGTGGCTCAGCCCAAGCTGCCCAGGCTGAACCAGAATaGAGGGGTCTGGCCTGGTGTTTGTCTATGGCTAGA | + |
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Preference number: 3 (lower is better) Translates to: GGSAQAAQAEPE*RGLAWCLSMAR Trigger: TCTAGCCATAGACAAACACCAGGCCAGACCCCTCCATTCTGGTTCAGCCTGGGCAGCTTGGGCTGAGCCACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| 3UTR CCA 72 bp | TTCAACTCCCTAGGGTATAGAGAGGGGGTGTTGGCTTaGGCACGTGTTTCTGTTTCCCAACGGGGAGCATGG | + |
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Preference number: 3 (lower is better) Translates to: FNSLGYREGVLA*ARVSVSQRGAW Trigger: CCATGCTCCCCGTTGGGAAACAGAAACACGTGCCCAAGCCAACACCCCCTCTCTATACCCTAGGGAGTTGAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| 3UTR CCA 72 bp | CGGCAGGAGATGGATAAGCCTGCCTGGGTTGGAAGATaGAGGAGTTCAGCTGTAACTAAGGGAGTGTGGCAT | + |
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Preference number: 3 (lower is better) Translates to: RQEMDKPAWVGR*RSSAVTKGVWH Trigger: ATGCCACACTCCCTTAGTTACAGCTGAACTCCTCCATCTTCCAACCCAGGCAGGCTTATCCATCTCCTGCCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| 3UTR CCA 72 bp | GCATTGGTCTCAGGCTCTGGAAGGAAAAGAGAAGACTaGTACCAAACCATGCTTTGGGGGAAAGCTGAACTG | + |
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Preference number: 3 (lower is better) Translates to: ALVSGSGRKRED*YQTMLWGKAEL Trigger: CAGTTCAGCTTTCCCCCAAAGCATGGTTTGGTACCAGTCTTCTCTTTTCCTTCCAGAGCCTGAGACCAATGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR GCA 90 bp | TCTGTTTCCCAACGGGGAGCATGGCCCTGGCTCCTACCAGTATCCTGGGGTGAGAGCAGGCGCAGTGAGTaGCAGCGCCGCAGCCTGAGC | + |
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Preference number: 4 (lower is better) Translates to: SVSQRGAWPWLLPVSWGESRRSE*QRRSLS Trigger: GCTCAGGCTGCGGCGCTGGCACTCACTGCGCCTGCT...CTCACCCCAGGATACTGGTAGGAGCCAGGGCCATGCTCCCCGTTGGGAAACAGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR CCA 90 bp | TTTCCCAACGGGGAGCATGGCCCTGGCTCCTACCAGTATCCTGGGGTGAGCCCTAGAGGAGGCTGGCCGTaGTCCTGCACAGACACTACG | + |
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Preference number: 4 (lower is better) Translates to: FPNGEHGPGSYQYPGVSPRGGWP*SCTDTT Trigger: CGTAGTGTCTGTGCAGGACCACGGCCAGCCTCCTCT...AGGGCTCACCCCAGGATACTGGTAGGAGCCAGGGCCATGCTCCCCGTTGGGAAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR CCA 90 bp | TTTCCCAACGGGGAGCATGGCCCTGGCTCCTACCAGTATCCTGGGGTGAGCCCTTCTGGATCCCAAGCGTaGGGAAGAGGGAACCGCATC | + |
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Preference number: 4 (lower is better) Translates to: FPNGEHGPGSYQYPGVSPSGSQA*GRGNRI Trigger: GATGCGGTTCCCTCTTCCCCACGCTTGGGATCCAGA...AGGGCTCACCCCAGGATACTGGTAGGAGCCAGGGCCATGCTCCCCGTTGGGAAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR CCA 90 bp | TCTGTTTCCCAACGGGGAGCATGGCCCTGGCTCCTACCAGTATCCTGGGGTGAGTCACTGTCGGGGTCGTaGGCGGTCACGGATGCGATA | + |
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Preference number: 4 (lower is better) Translates to: SVSQRGAWPWLLPVSWGESLSGS*AVTDAI Trigger: TATCGCATCCGTGACCGCCCACGACCCCGACAGTGA...CTCACCCCAGGATACTGGTAGGAGCCAGGGCCATGCTCCCCGTTGGGAAACAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR GCA 90 bp | AGAGAGGGGGTGTTGGCTTGGGCACGTGTTTCTGTTTCCCAACGGGGAGCATGGGGAAGACCAGCCCTTTaGAGTCCTCCCGCCGTTGCA | + |
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Preference number: 4 (lower is better) Translates to: REGVLAWARVSVSQRGAWGRPAL*SPPAVA Trigger: TGCAACGGCGGGAGGACTGCAAAGGGCTGGTCTTCC...CCATGCTCCCCGTTGGGAAACAGAAACACGTGCCCAAGCCAACACCCCCTCTCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR TCA 90 bp | CAGCCCAGCTACCTTGCTCAAAGAGAGGGACTGAAGGAGTGGGTGGGGTGGGGAGCCCAGTATGAGGCCTaGAGGAAAACGGGCGAGTTA | + |
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Preference number: 4 (lower is better) Translates to: QPSYLAQREGLKEWVGWGAQYEA*RKTGEL Trigger: TAACTCGCCCGTTTTCCTTCAGGCCTCATACTGGGC...TCCCCACCCCACCCACTCCTTCAGTCCCTCTCTTTGAGCAAGGTAGCTGGGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR TCA 90 bp | CAGCCCAGCTACCTTGCTCAAAGAGAGGGACTGAAGGAGTGGGTGGGGTGGGGAGATGTAGGCCCAGTATaGGGCCTGAAGGAAAACGGG | + |
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Preference number: 4 (lower is better) Translates to: QPSYLAQREGLKEWVGWGDVGPV*GLKENG Trigger: CCCGTTTTCCTTCAGGCCTCATACTGGGCCTACATC...TCCCCACCCCACCCACTCCTTCAGTCCCTCTCTTTGAGCAAGGTAGCTGGGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR GCA 90 bp | CTATTGGCTATTCTACACCAGCGGGGGAGGGGGATCTTCTACACTACTGTAAGGCGCGGATGCGCGCTGTaGCAGTGCGAACCGGGTCTC | + |
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Preference number: 4 (lower is better) Translates to: LLAILHQRGRGIFYTTVRRGCAL*QCEPGL Trigger: GAGACCCGGTTCGCACTGGCACAGCGCGCATCCGCG...CCTTACAGTAGTGTAGAAGATCCCCCTCCCCCGCTGGTGTAGAATAGCCAATAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR TCA 90 bp | ACAAAACACAGCACGGGCCGCGCAGGCAGATTGAGATTCAAAGGACAGACGGCTTTGACCAGCAGCAGCTaGGTGCCCACAGCCACGTTC | + |
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Preference number: 4 (lower is better) Translates to: TKHSTGRAGRLRFKGQTALTSSS*VPTATF Trigger: GAACGTGGCTGTGGGCACTCAGCTGCTGCTGGTCAA...AGCCGTCTGTCCTTTGAATCTCAATCTGCCTGCGCGGCCCGTGCTGTGTTTTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR GCA 90 bp | GGGAGTGTGGCATGGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTCCACTCAGGGCCCGAGCCGTaGTTATCTCGCCCGTGTGCA | + |
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Preference number: 4 (lower is better) Translates to: GSVAWFVCVCVCVCVYVHSGPEP*LSRPCA Trigger: TGCACACGGGCGAGATAAGCACGGCTCGGGCCCTGA...GTGGACATACACACACACACACACACACACACACACAAACCATGCCACACTCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR CCA 90 bp | ACAAAACACAGCACGGGCCGCGCAGGCAGATTGAGATTCAAAGGACAGACGGCTAGATCACTTCCGCATTaGCGCCTTCGTCTGGGTCGG | + |
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Preference number: 4 (lower is better) Translates to: TKHSTGRAGRLRFKGQTARSLPH*RLRLGR Trigger: CCGACCCAGACGAAGGCGCCAATGCGGAAGTGATCT...AGCCGTCTGTCCTTTGAATCTCAATCTGCCTGCGCGGCCCGTGCTGTGTTTTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR CCA 90 bp | CAGCCCAGCTACCTTGCTCAAAGAGAGGGACTGAAGGAGTGGGTGGGGTGGGGATTGGGGAGAGTTTTCTaGGACAGAGTTGGTGAGGGA | + |
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Preference number: 4 (lower is better) Translates to: QPSYLAQREGLKEWVGWGLGRVF*DRVGEG Trigger: TCCCTCACCAACTCTGTCCCAGAAAACTCTCCCCAA...TCCCCACCCCACCCACTCCTTCAGTCCCTCTCTTTGAGCAAGGTAGCTGGGCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR GCA 90 bp | GGGTCCCAGCAGAACTCTCTTTGCATATTCAACTCCCTAGGGTATAGAGAGGGGCAACCATCACGCGGATaGGCGCTGTGCCAGTGCGAA | + |
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Preference number: 4 (lower is better) Translates to: GSQQNSLCIFNSLGYREGQPSRG*ALCQCE Trigger: TTCGCACTGGCACAGCGCGCATCCGCGTGATGGTTG...CCCCTCTCTATACCCTAGGGAGTTGAATATGCAAAGAGAGTTCTGCTGGGACCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR GCA 90 bp | GAGGCCCCTCTTTCCTCTCTGGTCTTAAACTCACTTAGAAGTCGTCGTCTTGGACCAGCAGCAGCTGAGTaGCCACAGCCACGTTCTCCC | + |
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Preference number: 4 (lower is better) Translates to: EAPLSSLVLNSLRSRRLGPAAAE*PQPRSP Trigger: GGGAGAACGTGGCTGTGGGCACTCAGCTGCTGCTGG...TCCAAGACGACGACTTCTAAGTGAGTTTAAGACCAGAGAGGAAAGAGGGGCCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR GCA 90 bp | GGCGGCAGGAGATGGATAAGCCTGCCTGGGTTGGAAGATGGAGGAGTTCAGCTGCTTGAAAACTTTCGCTaGCTTGTCGTCCACGTACCG | + |
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Preference number: 4 (lower is better) Translates to: GGRRWISLPGLEDGGVQLLENFR*LVVHVP Trigger: CGGTACGTGGACGACAAGGCAGCGAAAGTTTTCAAG...CAGCTGAACTCCTCCATCTTCCAACCCAGGCAGGCTTATCCATCTCCTGCCGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR TCA 90 bp | AGGGGGATCTTCTACACTACTGTAAGGGCTAGGGCAGAGGAAGTTCTATGCACATCACGTCCAGAACTGTaGCCAGGACCTTGGCCCGTG | + |
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Preference number: 4 (lower is better) Translates to: RGIFYTTVRARAEEVLCTSRPEL*PGPWPV Trigger: CACGGGCCAAGGTCCTGGTCACAGTTCTGGACGTGA...TGTGCATAGAACTTCCTCTGCCCTAGCCCTTACAGTAGTGTAGAAGATCCCCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR GCA 90 bp | CTATTGGCTATTCTACACCAGCGGGGGAGGGGGATCTTCTACACTACTGTAAGGCCGAGCAAACGCAGGTaGGTTGTCGTTCGCATCCAC | + |
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Preference number: 4 (lower is better) Translates to: LLAILHQRGRGIFYTTVRPSKRR*VVVRIH Trigger: GTGGATGCGAACGACAACGCACCTGCGTTTGCTCGG...CCTTACAGTAGTGTAGAAGATCCCCCTCCCCCGCTGGTGTAGAATAGCCAATAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR TCA 90 bp | CAGATTGAGATTCAAAGGACAGACGGCTGTGTACAGCCCACCGCCCGCTGCCCACAGCTCCCCTATTGTTaGTATTGTCCCCAAGTTACT | + |
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Preference number: 4 (lower is better) Translates to: QIEIQRTDGCVQPTARCPQLPYC*YCPQVT Trigger: AGTAACTTGGGGACAATATCAACAATAGGGGAGCTG...TGGGCAGCGGGCGGTGGGCTGTACACAGCCGTCTGTCCTTTGAATCTCAATCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR TCA 90 bp | TTTCCCAACGGGGAGCATGGCCCTGGCTCCTACCAGTATCCTGGGGTGAGCCCTCCAGGACTGCATCTGTaGCTAATCTATAATAGTTTC | + |
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Preference number: 4 (lower is better) Translates to: FPNGEHGPGSYQYPGVSPPGLHL*LIYNSF Trigger: GAAACTATTATAGATTAGTCACAGATGCAGTCCTGG...AGGGCTCACCCCAGGATACTGGTAGGAGCCAGGGCCATGCTCCCCGTTGGGAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR TCA 90 bp | TCTGTTTCCCAACGGGGAGCATGGCCCTGGCTCCTACCAGTATCCTGGGGTGAGATCTCTAGATTTAACTaGCACTTGATGGACCCCATA | + |
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Preference number: 4 (lower is better) Translates to: SVSQRGAWPWLLPVSWGEISRFN*HLMDPI Trigger: TATGGGGTCCATCAAGTGTCAGTTAAATCTAGAGAT...CTCACCCCAGGATACTGGTAGGAGCCAGGGCCATGCTCCCCGTTGGGAAACAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR CCA 90 bp | CTAGGGTATAGAGAGGGGGTGTTGGCTTGGGCACGTGTTTCTGTTTCCCAACGGCTCCAGCACCAATTCTaGGTACTTGTTACCATCAGC | + |
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Preference number: 4 (lower is better) Translates to: LGYREGVLAWARVSVSQRLQHQF*VLVTIS Trigger: GCTGATGGTAACAAGTACCCAGAATTGGTGCTGGAG...CCGTTGGGAAACAGAAACACGTGCCCAAGCCAACACCCCCTCTCTATACCCTAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR CCA 90 bp | GGCGGCAGGAGATGGATAAGCCTGCCTGGGTTGGAAGATGGAGGAGTTCAGCTGCTGAAGTTTCGGAGGTaGAAGGAGATTCTAGATTGT | + |
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Preference number: 4 (lower is better) Translates to: GGRRWISLPGLEDGGVQLLKFRR*KEILDC Trigger: ACAATCTAGAATCTCCTTCCACCTCCGAAACTTCAG...CAGCTGAACTCCTCCATCTTCCAACCCAGGCAGGCTTATCCATCTCCTGCCGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR TCA 90 bp | GCTATTCTACACCAGCGGGGGAGGGGGATCTTCTACACTACTGTAAGGGCTAGGGATTTAACTGACACTTaGTGGACCCCATACACAGCT | + |
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Preference number: 4 (lower is better) Translates to: AILHQRGRGIFYTTVRARDLTDT*WTPYTA Trigger: AGCTGTGTATGGGGTCCATCAAGTGTCAGTTAAATC...CCTAGCCCTTACAGTAGTGTAGAAGATCCCCCTCCCCCGCTGGTGTAGAATAGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR TCA 90 bp | ACAAAACACAGCACGGGCCGCGCAGGCAGATTGAGATTCAAAGGACAGACGGCTAGTTACTGTCCAGCTTaGAAACTTTCGCTGCCTTGT | + |
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Preference number: 4 (lower is better) Translates to: TKHSTGRAGRLRFKGQTASYCPA*KLSLPC Trigger: ACAAGGCAGCGAAAGTTTTCAAGCTGGACAGTAACT...AGCCGTCTGTCCTTTGAATCTCAATCTGCCTGCGCGGCCCGTGCTGTGTTTTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR CCA 90 bp | AGGGTGCCTGTTCCCCCAAAACTTAAGCATTGGTCTCAGGCTCTGGAAGGAAAAGTTCTTCCCGATATCTaGATCCCAAGCGTGGGGAAG | + |
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Preference number: 4 (lower is better) Translates to: RVPVPPKLKHWSQALEGKVLPDI*IPSVGK Trigger: CTTCCCCACGCTTGGGATCCAGATATCGGGAAGAAC...TTTTCCTTCCAGAGCCTGAGACCAATGCTTAAGTTTTGGGGGAACAGGCACCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR CCA 90 bp | GAGGCCCCTCTTTCCTCTCTGGTCTTAAACTCACTTAGAAGTCGTCGTCTTGGAAACGCCAGTCAGTGTTaGGCGGGGCTTGCTGATTTA | + |
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Preference number: 4 (lower is better) Translates to: EAPLSSLVLNSLRSRRLGNASQC*AGLADL Trigger: TAAATCAGCAAGCCCCGCCCAACACTGACTGGCGTT...TCCAAGACGACGACTTCTAAGTGAGTTTAAGACCAGAGAGGAAAGAGGGGCCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR CCA 90 bp | ACACAGCACAAAACACAGCACGGGCCGCGCAGGCAGATTGAGATTCAAAGGACAAAGGGCAGATTCTCTTaGATGGAACAGATTACCTGT | + |
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Preference number: 4 (lower is better) Translates to: TQHKTQHGPRRQIEIQRTKGRFS*MEQITC Trigger: ACAGGTAATCTGTTCCATCCAAGAGAATCTGCCCTT...TGTCCTTTGAATCTCAATCTGCCTGCGCGGCCCGTGCTGTGTTTTGTGCTGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR CCA 90 bp | GAGGCCCCTCTTTCCTCTCTGGTCTTAAACTCACTTAGAAGTCGTCGTCTTGGAGCTATTAATGTCCCTTaGGGAGAGTTTTCTGGGACA | + |
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Preference number: 4 (lower is better) Translates to: EAPLSSLVLNSLRSRRLGAINVP*GEFSGT Trigger: TGTCCCAGAAAACTCTCCCCAAGGGACATTAATAGC...TCCAAGACGACGACTTCTAAGTGAGTTTAAGACCAGAGAGGAAAGAGGGGCCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR CCA 90 bp | AGGGGGATCTTCTACACTACTGTAAGGGCTAGGGCAGAGGAAGTTCTATGCACAGCAGATTCTCTTGGATaGAACAGATTACCTGTCCAT | + |
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Preference number: 4 (lower is better) Translates to: RGIFYTTVRARAEEVLCTADSLG*NRLPVH Trigger: ATGGACAGGTAATCTGTTCCATCCAAGAGAATCTGC...TGTGCATAGAACTTCCTCTGCCCTAGCCCTTACAGTAGTGTAGAAGATCCCCCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS TCA 90 bp | TGCGCGCTGTGCCAGTGCGAACCGGGTCTCCCGCGTCGGAAGCGGTaGGGACTAGGAGATGAGCGGCCTTTTCCTCCCGATCCAGCGAGC | + |
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Preference number: 5 (lower is better) Translates to: CALCQCEPGLPRRKR*GLGDERPFPPDPAS Trigger: GCTCGCTGGATCGGGAGGAAAAGGCCGCTCATCTCCTAGTCCTCACCGCTTCCGACGCGGGAGACCCGGTTCGCACTGGCACAGCGCGCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR CAA 90 bp | CAGCCCAGCTACCTTGCTCAAAGAGAGGGACTGAAGGAGTGGGTGGGGTGGGGAGTGACTTGGGCATTTTaGTCACTGTCGGGGTCGTGG | + |
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Preference number: 5 (lower is better) Translates to: QPSYLAQREGLKEWVGWGVTWAF*SLSGSW Trigger: CCACGACCCCGACAGTGACAAAAATGCCCAAGTCAC...TCCCCACCCCACCCACTCCTTCAGTCCCTCTCTTTGAGCAAGGTAGCTGGGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR CAA 90 bp | GCTATTCTACACCAGCGGGGGAGGGGGATCTTCTACACTACTGTAAGGGCTAGGACTGTGACCAGGACCTaGGCCCGTGCAGAATATCCC | + |
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Preference number: 5 (lower is better) Translates to: AILHQRGRGIFYTTVRARTVTRT*ARAEYP Trigger: GGGATATTCTGCACGGGCCAAGGTCCTGGTCACAGT...CCTAGCCCTTACAGTAGTGTAGAAGATCCCCCTCCCCCGCTGGTGTAGAATAGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR CAA 90 bp | GGAGGGTGCCTGTTCCCCCAAAACTTAAGCATTGGTCTCAGGCTCTGGAAGGAAGCAAACGCAGGTGCGTaGTCGTTCGCATCCACAACC | + |
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Preference number: 5 (lower is better) Translates to: GGCLFPQNLSIGLRLWKEANAGA*SFASTT Trigger: GGTTGTGGATGCGAACGACAACGCACCTGCGTTTGC...TTCCTTCCAGAGCCTGAGACCAATGCTTAAGTTTTGGGGGAACAGGCACCCTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR CAA 90 bp | ACAAAACACAGCACGGGCCGCGCAGGCAGATTGAGATTCAAAGGACAGACGGCTTTTTCTGGGACAGAGTaGGTGAGGGACGTGATGGCT | + |
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Preference number: 5 (lower is better) Translates to: TKHSTGRAGRLRFKGQTAFSGTE*VRDVMA Trigger: AGCCATCACGTCCCTCACCAACTCTGTCCCAGAAAA...AGCCGTCTGTCCTTTGAATCTCAATCTGCCTGCGCGGCCCGTGCTGTGTTTTGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR CAA 90 bp | TCTGTTTCCCAACGGGGAGCATGGCCCTGGCTCCTACCAGTATCCTGGGGTGAGAAAGGGCAGATTCTCTaGGATGGAACAGATTACCTG | + |
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Preference number: 5 (lower is better) Translates to: SVSQRGAWPWLLPVSWGEKGQIL*DGTDYL Trigger: CAGGTAATCTGTTCCATCCAAGAGAATCTGCCCTTT...CTCACCCCAGGATACTGGTAGGAGCCAGGGCCATGCTCCCCGTTGGGAAACAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR CAA 90 bp | CTAGGGTATAGAGAGGGGGTGTTGGCTTGGGCACGTGTTTCTGTTTCCCAACGGACCAATTCTGGGTACTaGTTACCATCAGCTCCGTTC | + |
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Preference number: 5 (lower is better) Translates to: LGYREGVLAWARVSVSQRTNSGY*LPSAPF Trigger: GAACGGAGCTGATGGTAACAAGTACCCAGAATTGGT...CCGTTGGGAAACAGAAACACGTGCCCAAGCCAACACCCCCTCTCTATACCCTAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR CAA 90 bp | CTAGGGTATAGAGAGGGGGTGTTGGCTTGGGCACGTGTTTCTGTTTCCCAACGGTCAGCTCCCCTATTGTaGATATTGTCCCCAAGTTAC | + |
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Preference number: 5 (lower is better) Translates to: LGYREGVLAWARVSVSQRSAPLL*ILSPSY Trigger: GTAACTTGGGGACAATATCAACAATAGGGGAGCTGA...CCGTTGGGAAACAGAAACACGTGCCCAAGCCAACACCCCCTCTCTATACCCTAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR CAA 90 bp | AGGGGGATCTTCTACACTACTGTAAGGGCTAGGGCAGAGGAAGTTCTATGCACACGCGTTATCTGTAGCTaGCACCTCCATCTCGTAGAA | + |
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Preference number: 5 (lower is better) Translates to: RGIFYTTVRARAEEVLCTRVICS*HLHLVE Trigger: TTCTACGAGATGGAGGTGCAAGCTACAGATAACGCG...TGTGCATAGAACTTCCTCTGCCCTAGCCCTTACAGTAGTGTAGAAGATCCCCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR CAA 90 bp | GAGGCCCCTCTTTCCTCTCTGGTCTTAAACTCACTTAGAAGTCGTCGTCTTGGAGAAGGAGATTCTAGATaGTCTAGATCTGCCAGGACG | + |
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Preference number: 5 (lower is better) Translates to: EAPLSSLVLNSLRSRRLGEGDSR*SRSART Trigger: CGTCCTGGCAGATCTAGACAATCTAGAATCTCCTTC...TCCAAGACGACGACTTCTAAGTGAGTTTAAGACCAGAGAGGAAAGAGGGGCCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS TCA 90 bp | TCAGCTCCCCTATTGTTGATATTGTCCCCAAGTTACTGTCCAGCTTaGAAACTTTCGCTGCCTTGTCGTCCACGTACCGGAAGGAATAGA | + |
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Preference number: 5 (lower is better) Translates to: SAPLLLILSPSYCPA*KLSLPCRPRTGRNR Trigger: TCTATTCCTTCCGGTACGTGGACGACAAGGCAGCGAAAGTTTTCAAGCTGGACAGTAACTTGGGGACAATATCAACAATAGGGGAGCTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR CAA 90 bp | AGGGTGCCTGTTCCCCCAAAACTTAAGCATTGGTCTCAGGCTCTGGAAGGAAAACCCCTATTGTTGATATaGTCCCCAAGTTACTGTCCA | + |
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Preference number: 5 (lower is better) Translates to: RVPVPPKLKHWSQALEGKPLLLI*SPSYCP Trigger: TGGACAGTAACTTGGGGACAATATCAACAATAGGGG...TTTTCCTTCCAGAGCCTGAGACCAATGCTTAAGTTTTGGGGGAACAGGCACCCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS-3UTR CAA 90 bp | AGGGGGATCTTCTACACTACTGTAAGGGCTAGGGCAGAGGAAGTTCTATGCACAGATTCAGCTCCCCTATaGTTGATATTGTCCCCAAGT | + |
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Preference number: 5 (lower is better) Translates to: RGIFYTTVRARAEEVLCTDSAPL*LILSPS Trigger: ACTTGGGGACAATATCAACAATAGGGGAGCTGAATC...TGTGCATAGAACTTCCTCTGCCCTAGCCCTTACAGTAGTGTAGAAGATCCCCCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS TCA 72 bp | GGGTCTCCCGCGTCGGAAGCGGTGAGGACTAGGAGATaGGCGGCCTTTTCCTCCCGATCCAGCGAGCTCTCC | + |
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Preference number: 6 (lower is better) Translates to: GSPASEAVRTRR*AAFSSRSSELS Trigger: GGAGAGCTCGCTGGATCGGGAGGAAAAGGCCGCTCATCTCCTAGTCCTCACCGCTTCCGACGCGGGAGACCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS TCA 72 bp | TGCCAGTGCGAACCGGGTCTCCCGCGTCGGAAGCGGTaGGGACTAGGAGATGAGCGGCCTTTTCCTCCCGAT | + |
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Preference number: 6 (lower is better) Translates to: CQCEPGLPRRKR*GLGDERPFPPD Trigger: ATCGGGAGGAAAAGGCCGCTCATCTCCTAGTCCTCACCGCTTCCGACGCGGGAGACCCGGTTCGCACTGGCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS GCA 72 bp | AACGGGCGAGTTATCGTTCGTGTCTGCTATGTCCAGTaGGAGGTGAGTTTCTGTTGTCAGGGGCGGACTTCC | + |
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Preference number: 6 (lower is better) Translates to: NGRVIVRVCYVQ*EVSFCCQGRTS Trigger: GGAAGTCCGCCCCTGACAACAGAAACTCACCTCGCACTGGACATAGCAGACACGAACGATAACTCGCCCGTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS CAA 90 bp | GACCAGGACCTTGGCCCGTGCAGAATATCCCGCGTTATCTGTAGCTaGCACCTCCATCTCGTAGAACCCCGATTCTTCATGATTCAGCTC | + |
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Preference number: 6 (lower is better) Translates to: DQDLGPCRISRVICS*HLHLVEPRFFMIQL Trigger: GAGCTGAATCATGAAGAATCGGGGTTCTACGAGATGGAGGTGCAAGCTACAGATAACGCGGGATATTCTGCACGGGCCAAGGTCCTGGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS TCA 72 bp | CCCTCTAGGGTTATTCTCTGGGATGTAGGCCCAGTATaGGGCCTGAAGGAAAACGGGCGAGTTATCGTTCGT | + |
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Preference number: 6 (lower is better) Translates to: PSRVILWDVGPV*GLKENGRVIVR Trigger: ACGAACGATAACTCGCCCGTTTTCCTTCAGGCCTCATACTGGGCCTACATCCCAGAGAATAACCCTAGAGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS CCA 72 bp | CGGGTCTCTGGGCTTGAGAGAAACGCCAGTCAGTGTTaGGCGGGGCTTGCTGATTTAATGCATGATTGTCTT | + |
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Preference number: 6 (lower is better) Translates to: RVSGLERNASQC*AGLADLMHDCL Trigger: AAGACAATCATGCATTAAATCAGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCCCAGAGACCCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS CAA 72 bp | CTTGGCCCGTGCAGAATATCCCGCGTTATCTGTAGCTaGCACCTCCATCTCGTAGAACCCCGATTCTTCATG | + |
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Preference number: 6 (lower is better) Translates to: LGPCRISRVICS*HLHLVEPRFFM Trigger: CATGAAGAATCGGGGTTCTACGAGATGGAGGTGCAAGCTACAGATAACGCGGGATATTCTGCACGGGCCAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS TCA 72 bp | CTATTGTTGATATTGTCCCCAAGTTACTGTCCAGCTTaGAAACTTTCGCTGCCTTGTCGTCCACGTACCGGA | + |
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Preference number: 6 (lower is better) Translates to: LLLILSPSYCPA*KLSLPCRPRTG Trigger: TCCGGTACGTGGACGACAAGGCAGCGAAAGTTTTCAAGCTGGACAGTAACTTGGGGACAATATCAACAATAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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| CDS TCA 72 bp | TTCCCTATATCTTCCATCAGAATCTCTAGATTTAACTaGCACTTGATGGACCCCATACACAGCTCCTCCCGG | + |
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Preference number: 6 (lower is better) Translates to: FPISSIRISRFN*HLMDPIHSSSR Trigger: CCGGGAGGAGCTGTGTATGGGGTCCATCAAGTGTCAGTTAAATCTAGAGATTCTGATGGAAGATATAGGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044851.8 |
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