Pregenerated sensors for PCDHGA11 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000102742

Ensembl transcript IDs: ENSMUST00000061279.10

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	GGCACACCAGCCAATCCGCTGGCAGCCTGGAGCAGACGTAATGAGTaGCAGCGCCTAAGCTTGAGAGCCAGCAGTACCATGACAAAGATG	+
Preference number: 5 (lower is better) Translates to: GTPANPLAAWSRRNE*QRLSLRASSTMTKM Trigger: CATCTTTGTCATGGTACTGCTGGCTCTCAAGCTTAGGCGCTGGCACTCATTACGTCTGCTCCAGGCTGCCAGCGGATTGGCTGGTGTGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061279.10
CDS TCA 90 bp	TCAGGAATACTCACTCTATACACAGGCTGTGTAAATTTTGGGATGTaGTCATTGACGTCGAGGACCACCACGCGAATGGGAACCGTGCCC	+
Preference number: 5 (lower is better) Translates to: SGILTLYTGCVNFGM*SLTSRTTTRMGTVP Trigger: GGGCACGGTTCCCATTCGCGTGGTGGTCCTCGACGTCAATGATCACATCCCAAAATTTACACAGCCTGTGTATAGAGTGAGTATTCCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061279.10
CDS GCA 90 bp	CGTAAATCTTCAGGGTTTCCTCCACGAGAATTTCCAAATTCAGCATaGAGGAGGGCATCGTATCACATAGCTCTTCACGGTCGATCCTAC	+
Preference number: 5 (lower is better) Translates to: RKSSGFPPREFPNSA*RRASYHIALHGRSY Trigger: GTAGGATCGACCGTGAAGAGCTATGTGATACGATGCCCTCCTGCATGCTGAATTTGGAAATTCTCGTGGAGGAAACCCTGAAGATTTACG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061279.10
CDS GCA 72 bp	GCCAATCCGCTGGCAGCCTGGAGCAGACGTAATGAGTaGCAGCGCCTAAGCTTGAGAGCCAGCAGTACCATG	+
Preference number: 6 (lower is better) Translates to: ANPLAAWSRRNE*QRLSLRASSTM Trigger: CATGGTACTGCTGGCTCTCAAGCTTAGGCGCTGGCACTCATTACGTCTGCTCCAGGCTGCCAGCGGATTGGC 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061279.10
CDS CAA 72 bp	GGAAATCGCGACCCAGGACTGGTATGCTCGCTGACTTaGATCTCTACTTCCTCTTCCCGGAAGCTGGGAGCG	+
Preference number: 6 (lower is better) Translates to: GNRDPGLVCSLT*ISTSSSRKLGA Trigger: CGCTCCCAGCTTCCGGGAAGAGGAAGTAGAGATCAAAGTCAGCGAGCATACCAGTCCTGGGTCGCGATTTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061279.10
CDS GCA 72 bp	GCGCTAGGAAGAGGAAATCGCGACCCAGGACTGGTATaGTCGCTGACTTTGATCTCTACTTCCTCTTCCCGG	+
Preference number: 6 (lower is better) Translates to: ALGRGNRDPGLV*SLTLISTSSSR Trigger: CCGGGAAGAGGAAGTAGAGATCAAAGTCAGCGAGCATACCAGTCCTGGGTCGCGATTTCCTCTTCCTAGCGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061279.10
CDS CCA 72 bp	CGGGTCTCTGGGCTTGAGAGAAACGCCAGTCAGTGTTaGGCGGGGCTTGCTGAATATCTGTCGGTTCACATT	+
Preference number: 6 (lower is better) Translates to: RVSGLERNASQC*AGLAEYLSVHI Trigger: AATGTGAACCGACAGATATTCAGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCCCAGAGACCCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061279.10
CDS TCA 72 bp	CTCACTCTATACACAGGCTGTGTAAATTTTGGGATGTaGTCATTGACGTCGAGGACCACCACGCGAATGGGA	+
Preference number: 6 (lower is better) Translates to: LTLYTGCVNFGM*SLTSRTTTRMG Trigger: TCCCATTCGCGTGGTGGTCCTCGACGTCAATGATCACATCCCAAAATTTACACAGCCTGTGTATAGAGTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061279.10
CDS CAA 72 bp	TGTAGCTCTCCACCTGCTCCCGGTCCAGTTCACTATTaGTTATCAATTTATAATAATTTCCATACGTCTTTT	+
Preference number: 6 (lower is better) Translates to: CSSPPAPGPVHY*LSIYNNFHTSF Trigger: AAAAGACGTATGGAAATTATTATAAATTGATAACAAATAGTGAACTGGACCGGGAGCAGGTGGAGAGCTACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061279.10

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