Pregenerated sensors for PCDHGA11 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000102742Ensembl transcript IDs: ENSMUST00000061279.10
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS GCA 90 bp | GGCACACCAGCCAATCCGCTGGCAGCCTGGAGCAGACGTAATGAGTaGCAGCGCCTAAGCTTGAGAGCCAGCAGTACCATGACAAAGATG | + |
Preference number: 5 (lower is better) Translates to: GTPANPLAAWSRRNE*QRLSLRASSTMTKM Trigger: CATCTTTGTCATGGTACTGCTGGCTCTCAAGCTTAGGCGCTGGCACTCATTACGTCTGCTCCAGGCTGCCAGCGGATTGGCTGGTGTGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061279.10 |
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CDS TCA 90 bp | TCAGGAATACTCACTCTATACACAGGCTGTGTAAATTTTGGGATGTaGTCATTGACGTCGAGGACCACCACGCGAATGGGAACCGTGCCC | + |
Preference number: 5 (lower is better) Translates to: SGILTLYTGCVNFGM*SLTSRTTTRMGTVP Trigger: GGGCACGGTTCCCATTCGCGTGGTGGTCCTCGACGTCAATGATCACATCCCAAAATTTACACAGCCTGTGTATAGAGTGAGTATTCCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061279.10 |
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CDS GCA 90 bp | CGTAAATCTTCAGGGTTTCCTCCACGAGAATTTCCAAATTCAGCATaGAGGAGGGCATCGTATCACATAGCTCTTCACGGTCGATCCTAC | + |
Preference number: 5 (lower is better) Translates to: RKSSGFPPREFPNSA*RRASYHIALHGRSY Trigger: GTAGGATCGACCGTGAAGAGCTATGTGATACGATGCCCTCCTGCATGCTGAATTTGGAAATTCTCGTGGAGGAAACCCTGAAGATTTACG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061279.10 |
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CDS GCA 72 bp | GCCAATCCGCTGGCAGCCTGGAGCAGACGTAATGAGTaGCAGCGCCTAAGCTTGAGAGCCAGCAGTACCATG | + |
Preference number: 6 (lower is better) Translates to: ANPLAAWSRRNE*QRLSLRASSTM Trigger: CATGGTACTGCTGGCTCTCAAGCTTAGGCGCTGGCACTCATTACGTCTGCTCCAGGCTGCCAGCGGATTGGC 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061279.10 |
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CDS CAA 72 bp | GGAAATCGCGACCCAGGACTGGTATGCTCGCTGACTTaGATCTCTACTTCCTCTTCCCGGAAGCTGGGAGCG | + |
Preference number: 6 (lower is better) Translates to: GNRDPGLVCSLT*ISTSSSRKLGA Trigger: CGCTCCCAGCTTCCGGGAAGAGGAAGTAGAGATCAAAGTCAGCGAGCATACCAGTCCTGGGTCGCGATTTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061279.10 |
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CDS GCA 72 bp | GCGCTAGGAAGAGGAAATCGCGACCCAGGACTGGTATaGTCGCTGACTTTGATCTCTACTTCCTCTTCCCGG | + |
Preference number: 6 (lower is better) Translates to: ALGRGNRDPGLV*SLTLISTSSSR Trigger: CCGGGAAGAGGAAGTAGAGATCAAAGTCAGCGAGCATACCAGTCCTGGGTCGCGATTTCCTCTTCCTAGCGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061279.10 |
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CDS CCA 72 bp | CGGGTCTCTGGGCTTGAGAGAAACGCCAGTCAGTGTTaGGCGGGGCTTGCTGAATATCTGTCGGTTCACATT | + |
Preference number: 6 (lower is better) Translates to: RVSGLERNASQC*AGLAEYLSVHI Trigger: AATGTGAACCGACAGATATTCAGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCCCAGAGACCCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061279.10 |
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CDS TCA 72 bp | CTCACTCTATACACAGGCTGTGTAAATTTTGGGATGTaGTCATTGACGTCGAGGACCACCACGCGAATGGGA | + |
Preference number: 6 (lower is better) Translates to: LTLYTGCVNFGM*SLTSRTTTRMG Trigger: TCCCATTCGCGTGGTGGTCCTCGACGTCAATGATCACATCCCAAAATTTACACAGCCTGTGTATAGAGTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061279.10 |
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CDS CAA 72 bp | TGTAGCTCTCCACCTGCTCCCGGTCCAGTTCACTATTaGTTATCAATTTATAATAATTTCCATACGTCTTTT | + |
Preference number: 6 (lower is better) Translates to: CSSPPAPGPVHY*LSIYNNFHTSF Trigger: AAAAGACGTATGGAAATTATTATAAATTGATAACAAATAGTGAACTGGACCGGGAGCAGGTGGAGAGCTACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061279.10 |