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Pregenerated sensors for PCDHGA11 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000102742

Ensembl transcript IDs: ENSMUST00000061279.10

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp GGCACACCAGCCAATCCGCTGGCAGCCTGGAGCAGACGTAATGAGTaGCAGCGCCTAAGCTTGAGAGCCAGCAGTACCATGACAAAGATG +
Preference number: 5 (lower is better)
Translates to: GTPANPLAAWSRRNE*QRLSLRASSTMTKM
Trigger: CATCTTTGTCATGGTACTGCTGGCTCTCAAGCTTAGGCGCTGGCACTCATTACGTCTGCTCCAGGCTGCCAGCGGATTGGCTGGTGTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061279.10
CDS TCA 90 bp TCAGGAATACTCACTCTATACACAGGCTGTGTAAATTTTGGGATGTaGTCATTGACGTCGAGGACCACCACGCGAATGGGAACCGTGCCC +
Preference number: 5 (lower is better)
Translates to: SGILTLYTGCVNFGM*SLTSRTTTRMGTVP
Trigger: GGGCACGGTTCCCATTCGCGTGGTGGTCCTCGACGTCAATGATCACATCCCAAAATTTACACAGCCTGTGTATAGAGTGAGTATTCCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061279.10
CDS GCA 90 bp CGTAAATCTTCAGGGTTTCCTCCACGAGAATTTCCAAATTCAGCATaGAGGAGGGCATCGTATCACATAGCTCTTCACGGTCGATCCTAC +
Preference number: 5 (lower is better)
Translates to: RKSSGFPPREFPNSA*RRASYHIALHGRSY
Trigger: GTAGGATCGACCGTGAAGAGCTATGTGATACGATGCCCTCCTGCATGCTGAATTTGGAAATTCTCGTGGAGGAAACCCTGAAGATTTACG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061279.10
CDS GCA 72 bp GCCAATCCGCTGGCAGCCTGGAGCAGACGTAATGAGTaGCAGCGCCTAAGCTTGAGAGCCAGCAGTACCATG +
Preference number: 6 (lower is better)
Translates to: ANPLAAWSRRNE*QRLSLRASSTM
Trigger: CATGGTACTGCTGGCTCTCAAGCTTAGGCGCTGGCACTCATTACGTCTGCTCCAGGCTGCCAGCGGATTGGC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061279.10
CDS CAA 72 bp GGAAATCGCGACCCAGGACTGGTATGCTCGCTGACTTaGATCTCTACTTCCTCTTCCCGGAAGCTGGGAGCG +
Preference number: 6 (lower is better)
Translates to: GNRDPGLVCSLT*ISTSSSRKLGA
Trigger: CGCTCCCAGCTTCCGGGAAGAGGAAGTAGAGATCAAAGTCAGCGAGCATACCAGTCCTGGGTCGCGATTTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061279.10
CDS GCA 72 bp GCGCTAGGAAGAGGAAATCGCGACCCAGGACTGGTATaGTCGCTGACTTTGATCTCTACTTCCTCTTCCCGG +
Preference number: 6 (lower is better)
Translates to: ALGRGNRDPGLV*SLTLISTSSSR
Trigger: CCGGGAAGAGGAAGTAGAGATCAAAGTCAGCGAGCATACCAGTCCTGGGTCGCGATTTCCTCTTCCTAGCGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061279.10
CDS CCA 72 bp CGGGTCTCTGGGCTTGAGAGAAACGCCAGTCAGTGTTaGGCGGGGCTTGCTGAATATCTGTCGGTTCACATT +
Preference number: 6 (lower is better)
Translates to: RVSGLERNASQC*AGLAEYLSVHI
Trigger: AATGTGAACCGACAGATATTCAGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCCCAGAGACCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061279.10
CDS TCA 72 bp CTCACTCTATACACAGGCTGTGTAAATTTTGGGATGTaGTCATTGACGTCGAGGACCACCACGCGAATGGGA +
Preference number: 6 (lower is better)
Translates to: LTLYTGCVNFGM*SLTSRTTTRMG
Trigger: TCCCATTCGCGTGGTGGTCCTCGACGTCAATGATCACATCCCAAAATTTACACAGCCTGTGTATAGAGTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061279.10
CDS CAA 72 bp TGTAGCTCTCCACCTGCTCCCGGTCCAGTTCACTATTaGTTATCAATTTATAATAATTTCCATACGTCTTTT +
Preference number: 6 (lower is better)
Translates to: CSSPPAPGPVHY*LSIYNNFHTSF
Trigger: AAAAGACGTATGGAAATTATTATAAATTGATAACAAATAGTGAACTGGACCGGGAGCAGGTGGAGAGCTACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061279.10