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Pregenerated sensors for PCDHGA10 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000102222

Ensembl transcript IDs: ENSMUST00000193404.2

Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp CGCTCGTGCCGGGTCTCTGGGCTTGAGAGAAACGCCAGTCAGTGTTaGGCGGGGCTTGTGGCACCAAAGGAGCGTCTTCTACAGGACACT +
Preference number: 5 (lower is better)
Translates to: RSCRVSGLERNASQC*AGLVAPKERLLQDT
Trigger: AGTGTCCTGTAGAAGACGCTCCTTTGGTGCCACAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCCCAGAGACCCGGCACGAGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193404.2
CDS GCA 90 bp TTAAACGGAAGATTCCCTGAGATGGAACAGGCTACCTCTCCATTCTaGCCGGAGTCTAAATCATGGACGTTTAGTAGGGCTATGACAGTT +
Preference number: 5 (lower is better)
Translates to: LNGRFPEMEQATSPF*PESKSWTFSRAMTV
Trigger: AACTGTCATAGCCCTACTAAACGTCCATGATTTAGACTCCGGGCAGAATGGAGAGGTAGCCTGTTCCATCTCAGGGAATCTTCCGTTTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193404.2
CDS CCA 90 bp TTTCAGAAATTTTTATTTCTCCGGTATGTTTGTCTAGTTGGAATTTaGACAATTGTGTGTCCAGCGATTTTCGGAATGCATATGTCACTT +
Preference number: 5 (lower is better)
Translates to: FQKFLFLRYVCLVGI*TIVCPAIFGMHMSL
Trigger: AAGTGACATATGCATTCCGAAAATCGCTGGACACACAATTGTCCAAATTCCAACTAGACAAACATACCGGAGAAATAAAAATTTCTGAAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000193404.2
CDS CCA 72 bp CGGGTCTCTGGGCTTGAGAGAAACGCCAGTCAGTGTTaGGCGGGGCTTGTGGCACCAAAGGAGCGTCTTCTA +
Preference number: 6 (lower is better)
Translates to: RVSGLERNASQC*AGLVAPKERLL
Trigger: TAGAAGACGCTCCTTTGGTGCCACAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCCCAGAGACCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193404.2
CDS GCA 72 bp CGTCTTTGTCGGTGGCGGTTACCTTTAGCAGTTGGGTaGCCACAGGCAGGTTCTCCGGAATGTTCACGCGGT +
Preference number: 6 (lower is better)
Translates to: RLCRWRLPLAVG*PQAGSPECSRG
Trigger: ACCGCGTGAACATTCCGGAGAACCTGCCTGTGGGCACCCAACTGCTAAAGGTAACCGCCACCGACAAAGACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193404.2
CDS CAA 72 bp GGCTTGAGAGAAACGCCAGTCAGTGTTGGGCGGGGCTaGTGGCACCAAAGGAGCGTCTTCTACAGGACACTT +
Preference number: 6 (lower is better)
Translates to: GLRETPVSVGRG*WHQRSVFYRTL
Trigger: AAGTGTCCTGTAGAAGACGCTCCTTTGGTGCCACAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193404.2
CDS CCA 72 bp TTGAGAGAAACGCCAGTCAGTGTTGGGCGGGGCTTGTaGCACCAAAGGAGCGTCTTCTACAGGACACTTGGA +
Preference number: 6 (lower is better)
Translates to: LRETPVSVGRGL*HQRSVFYRTLG
Trigger: TCCAAGTGTCCTGTAGAAGACGCTCCTTTGGTGCCACAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193404.2
CDS CCA 72 bp CAGGCTACCTCTCCATTCTGCCCGGAGTCTAAATCATaGACGTTTAGTAGGGCTATGACAGTTCCCACCGGC +
Preference number: 6 (lower is better)
Translates to: QATSPFCPESKS*TFSRAMTVPTG
Trigger: GCCGGTGGGAACTGTCATAGCCCTACTAAACGTCCATGATTTAGACTCCGGGCAGAATGGAGAGGTAGCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193404.2
CDS TCA 72 bp GCCCGGAGTCTAAATCATGGACGTTTAGTAGGGCTATaGCAGTTCCCACCGGCGAATCTTCTGTCACTGGAC +
Preference number: 6 (lower is better)
Translates to: ARSLNHGRLVGL*QFPPANLLSLD
Trigger: GTCCAGTGACAGAAGATTCGCCGGTGGGAACTGTCATAGCCCTACTAAACGTCCATGATTTAGACTCCGGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193404.2
CDS TCA 72 bp ACAAAGGTGGGTTTCCCCCATCAGTGGCTGTTACTGTaGTGTTGTAAGCGGGTACCTGTTCCCGATCAAGGG +
Preference number: 6 (lower is better)
Translates to: TKVGFPHQWLLL*CCKRVPVPDQG
Trigger: CCCTTGATCGGGAACAGGTACCCGCTTACAACATCACAGTAACAGCCACTGATGGGGGAAACCCACCTTTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000193404.2
CDS CAA 90 bp TCCGGAATGTTCACGCGGTATTCAGTGGAGGTGAAGACTGGAGCATaGTCATTTGCATCAAAGACGGTCACAGTGATGAGGACAGTGCCC +
Preference number: 6 (lower is better)
Translates to: SGMFTRYSVEVKTGA*SFASKTVTVMRTVP
Trigger: GGGCACTGTCCTCATCACTGTGACCGTCTTTGATGCAAATGACAATGCTCCAGTCTTCACCTCCACTGAATACCGCGTGAACATTCCGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193404.2
CDS TCA 72 bp GATATCTGCCACTTGCAGAGTGAAGTCAGCTTTGGTTaGCAAAGGTGGGTTTCCCCCATCAGTGGCTGTTAC +
Preference number: 6 (lower is better)
Translates to: DICHLQSEVSFG*QRWVSPISGCY
Trigger: GTAACAGCCACTGATGGGGGAAACCCACCTTTGTCAACCAAAGCTGACTTCACTCTGCAAGTGGCAGATATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000193404.2
CDS GCA 72 bp AGATTCCCTGAGATGGAACAGGCTACCTCTCCATTCTaGCCGGAGTCTAAATCATGGACGTTTAGTAGGGCT +
Preference number: 6 (lower is better)
Translates to: RFPEMEQATSPF*PESKSWTFSRA
Trigger: AGCCCTACTAAACGTCCATGATTTAGACTCCGGGCAGAATGGAGAGGTAGCCTGTTCCATCTCAGGGAATCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193404.2
CDS CAA 72 bp TTCACGCGGTATTCAGTGGAGGTGAAGACTGGAGCATaGTCATTTGCATCAAAGACGGTCACAGTGATGAGG +
Preference number: 6 (lower is better)
Translates to: FTRYSVEVKTGA*SFASKTVTVMR
Trigger: CCTCATCACTGTGACCGTCTTTGATGCAAATGACAATGCTCCAGTCTTCACCTCCACTGAATACCGCGTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193404.2
CDS GCA 72 bp ATTTACATCTTCTACTGTAATCAGCACCTTCGCAGTTaGAAGATAGGCCCCTCCATCTTCAGCTTGGATTTC +
Preference number: 6 (lower is better)
Translates to: IYIFYCNQHLRS*KIGPSIFSLDF
Trigger: GAAATCCAAGCTGAAGATGGAGGGGCCTATCTTGCAACTGCGAAGGTGCTGATTACAGTAGAAGATGTAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193404.2
CDS CCA 72 bp TTTTTATTTCTCCGGTATGTTTGTCTAGTTGGAATTTaGACAATTGTGTGTCCAGCGATTTTCGGAATGCAT +
Preference number: 6 (lower is better)
Translates to: FLFLRYVCLVGI*TIVCPAIFGMH
Trigger: ATGCATTCCGAAAATCGCTGGACACACAATTGTCCAAATTCCAACTAGACAAACATACCGGAGAAATAAAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000193404.2
CDS CAA 72 bp TCTAGATTTTCAGAAATTTTTATTTCTCCGGTATGTTaGTCTAGTTGGAATTTGGACAATTGTGTGTCCAGC +
Preference number: 6 (lower is better)
Translates to: SRFSEIFISPVC*SSWNLDNCVSS
Trigger: GCTGGACACACAATTGTCCAAATTCCAACTAGACAAACATACCGGAGAAATAAAAATTTCTGAAAATCTAGA
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000193404.2