Pregenerated sensors for PCDHGA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000103144Ensembl transcript IDs: ENSMUST00000194190.2, ENSMUST00000194888.2
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CAA 90 bp | CAAAGGAGACAGGCCTTCATATACACCCCTTATCCTCTCCACTCACAGTATGACTTTGAGACTGAGATTTaGAGCATGTTCTCCAGCCCC | + |
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Preference number: 3 (lower is better) Translates to: QRRQAFIYTPYPLHSQYDFETEI*SMFSSP Trigger: GGGGCTGGAGAACATGCTCAAAATCTCAGTCTCAAA...GTCATACTGTGAGTGGAGAGGATAAGGGGTGTATATGAAGGCCTGTCTCCTTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| 3UTR TCA 72 bp | CTTCATATACACCCCTTATCCTCTCCACTCACAGTATaGCTAAAGTCTCCTTGTCAAAGTAGGAGTTTCCAC | + |
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Preference number: 3 (lower is better) Translates to: LHIHPLSSPLTV*LKSPCQSRSFH Trigger: GTGGAAACTCCTACTTTGACAAGGAGACTTTAGTCATACTGTGAGTGGAGAGGATAAGGGGTGTATATGAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR GCA 90 bp | CTGCTGGGATACAAAGTGAGTTTGAGGCCAACCCAGGCATCTTATCAAGACCTTCGGCAGGGGTCCCCATaGTGCCCAGGTCAGCCAGGA | + |
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Preference number: 4 (lower is better) Translates to: LLGYKVSLRPTQASYQDLRQGSP*CPGQPG Trigger: TCCTGGCTGACCTGGGCAGCATGGGGACCCCTGCCG...AAGGTCTTGATAAGATGCCTGGGTTGGCCTCAAACTCACTTTGTATCCCAGCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR TCA 90 bp | CTGCTGGGATACAAAGTGAGTTTGAGGCCAACCCAGGCATCTTATCAAGACCTTCGCCATCCGAGGCAGTaGGGACAAGGTAGTGGACAG | + |
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Preference number: 4 (lower is better) Translates to: LLGYKVSLRPTQASYQDLRHPRQ*GQGSGQ Trigger: CTGTCCACTACCTTGTCCTCACTGCCTCGGATGGCG...AAGGTCTTGATAAGATGCCTGGGTTGGCCTCAAACTCACTTTGTATCCCAGCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR TCA 90 bp | CTGCTGGGATACAAAGTGAGTTTGAGGCCAACCCAGGCATCTTATCAAGACCTTGTAGAGTGTCAGGTCTaGATCCTGGGGATCGGCAGG | + |
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Preference number: 4 (lower is better) Translates to: LLGYKVSLRPTQASYQDLVECQV*ILGIGR Trigger: CCTGCCGATCCCCAGGATTCAGACCTGACACTCTAC...AAGGTCTTGATAAGATGCCTGGGTTGGCCTCAAACTCACTTTGTATCCCAGCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR CCA 90 bp | CAAAGGAGACAGGCCTTCATATACACCCCTTATCCTCTCCACTCACAGTATGACCAACACCTACAAAGTTaGAGGCAGGCAGGCCAGTCA | + |
|
Preference number: 4 (lower is better) Translates to: QRRQAFIYTPYPLHSQYDQHLQS*RQAGQS Trigger: TGACTGGCCTGCCTGCCTCCAACTTTGTAGGTGTTG...GTCATACTGTGAGTGGAGAGGATAAGGGGTGTATATGAAGGCCTGTCTCCTTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR TCA 90 bp | CAAAGGAGACAGGCCTTCATATACACCCCTTATCCTCTCCACTCACAGTATGACAGAGTCAGCAGTGAGTaGGATCTCACGGGAATAGGT | + |
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Preference number: 4 (lower is better) Translates to: QRRQAFIYTPYPLHSQYDRVSSE*DLTGIG Trigger: ACCTATTCCCGTGAGATCTCACTCACTGCTGACTCT...GTCATACTGTGAGTGGAGAGGATAAGGGGTGTATATGAAGGCCTGTCTCCTTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR TCA 90 bp | AACCCTGCTGGGATACAAAGTGAGTTTGAGGCCAACCCAGGCATCTTATCAAGATTCGAGAGTCAGCAGTaGGTGAGATCTCACGGGAAT | + |
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Preference number: 4 (lower is better) Translates to: NPAGIQSEFEANPGILSRFESQQ*VRSHGN Trigger: ATTCCCGTGAGATCTCACTCACTGCTGACTCTCGAA...TCTTGATAAGATGCCTGGGTTGGCCTCAAACTCACTTTGTATCCCAGCAGGGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR GCA 90 bp | CAAAGGAGACAGGCCTTCATATACACCCCTTATCCTCTCCACTCACAGTATGACCTGTCTAGAGGTCTCTaGAGTACCATCTCTGGCTGT | + |
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Preference number: 4 (lower is better) Translates to: QRRQAFIYTPYPLHSQYDLSRGL*STISGC Trigger: ACAGCCAGAGATGGTACTGCAGAGACCTCTAGACAG...GTCATACTGTGAGTGGAGAGGATAAGGGGTGTATATGAAGGCCTGTCTCCTTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR GCA 90 bp | GATTATAAATTTAAAACCCTGCTGGGATACAAAGTGAGTTTGAGGCCAACCCAGGCAGGGCCCGAGCAGTaGGTACCTCACCAGTGTGTA | + |
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Preference number: 4 (lower is better) Translates to: DYKFKTLLGYKVSLRPTQAGPEQ*VPHQCV Trigger: TACACACTGGTGAGGTACGCACTGCTCGGGCCCTGC...CTGGGTTGGCCTCAAACTCACTTTGTATCCCAGCAGGGTTTTAAATTTATAATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR GCA 90 bp | CAAAGGAGACAGGCCTTCATATACACCCCTTATCCTCTCCACTCACAGTATGACCAAAGGCTAGGAAGATaGAGGAGACTACAGCCACTG | + |
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Preference number: 4 (lower is better) Translates to: QRRQAFIYTPYPLHSQYDQRLGR*RRLQPL Trigger: CAGTGGCTGTAGTCTCCTGCATCTTCCTAGCCTTTG...GTCATACTGTGAGTGGAGAGGATAAGGGGTGTATATGAAGGCCTGTCTCCTTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR CCA 90 bp | AACCCTGCTGGGATACAAAGTGAGTTTGAGGCCAACCCAGGCATCTTATCAAGAGAGGCAGAGGGATCCTaGTACCTGGAGTCGTTATTT | + |
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Preference number: 4 (lower is better) Translates to: NPAGIQSEFEANPGILSREAEGS*YLESLF Trigger: AAATAACGACTCCAGGTACCAGGATCCCTCTGCCTC...TCTTGATAAGATGCCTGGGTTGGCCTCAAACTCACTTTGTATCCCAGCAGGGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR CCA 90 bp | CAAAGGAGACAGGCCTTCATATACACCCCTTATCCTCTCCACTCACAGTATGACTGCGGGAAGATCAAGTaGCTCTTTCGAGAGTCAGCA | + |
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Preference number: 4 (lower is better) Translates to: QRRQAFIYTPYPLHSQYDCGKIK*LFRESA Trigger: TGCTGACTCTCGAAAGAGCCACTTGATCTTCCCGCA...GTCATACTGTGAGTGGAGAGGATAAGGGGTGTATATGAAGGCCTGTCTCCTTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR TCA 90 bp | AACCCTGCTGGGATACAAAGTGAGTTTGAGGCCAACCCAGGCATCTTATCAAGACTGGTAGCTCTGAAGTaGGTTTATCCCCACATCAAG | + |
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Preference number: 4 (lower is better) Translates to: NPAGIQSEFEANPGILSRLVALK*VYPHIK Trigger: CTTGATGTGGGGATAAACTCACTTCAGAGCTACCAG...TCTTGATAAGATGCCTGGGTTGGCCTCAAACTCACTTTGTATCCCAGCAGGGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR TCA 90 bp | CTGCTGGGATACAAAGTGAGTTTGAGGCCAACCCAGGCATCTTATCAAGACCTTCCAAGAGTTTTGTCCTaGGTCTTTGTCCACTGCTAC | + |
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Preference number: 4 (lower is better) Translates to: LLGYKVSLRPTQASYQDLPRVLS*VFVHCY Trigger: GTAGCAGTGGACAAAGACTCAGGACAAAACTCTTGG...AAGGTCTTGATAAGATGCCTGGGTTGGCCTCAAACTCACTTTGTATCCCAGCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR TCA 90 bp | CTGCTGGGATACAAAGTGAGTTTGAGGCCAACCCAGGCATCTTATCAAGACCTTACCAATGTCGCAGCTTaGGCACCAAGAGCACTATTA | + |
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Preference number: 4 (lower is better) Translates to: LLGYKVSLRPTQASYQDLTNVAA*APRALL Trigger: TAATAGTGCTCTTGGTGCTCAAGCTGCGACATTGGT...AAGGTCTTGATAAGATGCCTGGGTTGGCCTCAAACTCACTTTGTATCCCAGCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR GCA 90 bp | CAAAGGAGACAGGCCTTCATATACACCCCTTATCCTCTCCACTCACAGTATGACCTCTGCCTTAGTAAATaGTGGTGGGTTGTCGTTCAC | + |
|
Preference number: 4 (lower is better) Translates to: QRRQAFIYTPYPLHSQYDLCLSK*WWVVVH Trigger: GTGAACGACAACCCACCAGCATTTACTAAGGCAGAG...GTCATACTGTGAGTGGAGAGGATAAGGGGTGTATATGAAGGCCTGTCTCCTTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR GCA 90 bp | CTGCTGGGATACAAAGTGAGTTTGAGGCCAACCCAGGCATCTTATCAAGACCTTGCCATCACTCTTAGCTaGAAATCTCGAAACTGCTCA | + |
|
Preference number: 4 (lower is better) Translates to: LLGYKVSLRPTQASYQDLAITLS*KSRNCS Trigger: TGAGCAGTTTCGAGATTTGCAGCTAAGAGTGATGGC...AAGGTCTTGATAAGATGCCTGGGTTGGCCTCAAACTCACTTTGTATCCCAGCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR CCA 90 bp | CAAAGGAGACAGGCCTTCATATACACCCCTTATCCTCTCCACTCACAGTATGACAGGGATCCTGGTACCTaGAGTCGTTATTTCACTCAT | + |
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Preference number: 4 (lower is better) Translates to: QRRQAFIYTPYPLHSQYDRDPGT*SRYFTH Trigger: ATGAGTGAAATAACGACTCCAGGTACCAGGATCCCT...GTCATACTGTGAGTGGAGAGGATAAGGGGTGTATATGAAGGCCTGTCTCCTTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR CCA 90 bp | CTGCTGGGATACAAAGTGAGTTTGAGGCCAACCCAGGCATCTTATCAAGACCTTCTTAGTAAATGCTGGTaGGTTGTCGTTCACATCTAC | + |
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Preference number: 4 (lower is better) Translates to: LLGYKVSLRPTQASYQDLLSKCW*VVVHIY Trigger: GTAGATGTGAACGACAACCCACCAGCATTTACTAAG...AAGGTCTTGATAAGATGCCTGGGTTGGCCTCAAACTCACTTTGTATCCCAGCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR TCA 90 bp | CTGCTGGGATACAAAGTGAGTTTGAGGCCAACCCAGGCATCTTATCAAGACCTTTTGTTATCAGCGTCTTaGTCATGCACACTGATAAGA | + |
|
Preference number: 4 (lower is better) Translates to: LLGYKVSLRPTQASYQDLLLSAS*SCTLIR Trigger: TCTTATCAGTGTGCATGATCAAGACGCTGATAACAA...AAGGTCTTGATAAGATGCCTGGGTTGGCCTCAAACTCACTTTGTATCCCAGCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR GCA 90 bp | CAAAGGAGACAGGCCTTCATATACACCCCTTATCCTCTCCACTCACAGTATGACAGTTCCCTGATCTGTTaGTGTTATTGTGATGTTGTG | + |
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Preference number: 4 (lower is better) Translates to: QRRQAFIYTPYPLHSQYDSSLIC*CYCDVV Trigger: CACAACATCACAATAACAGCAACAGATCAGGGAACT...GTCATACTGTGAGTGGAGAGGATAAGGGGTGTATATGAAGGCCTGTCTCCTTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR CCA 90 bp | AACCCTGCTGGGATACAAAGTGAGTTTGAGGCCAACCCAGGCATCTTATCAAGAAGGAGGAAAGTTTTCTaGTACTGTGTTAGTGACAGA | + |
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Preference number: 4 (lower is better) Translates to: NPAGIQSEFEANPGILSRRRKVF*YCVSDR Trigger: TCTGTCACTAACACAGTACCAGAAAACTTTCCTCCT...TCTTGATAAGATGCCTGGGTTGGCCTCAAACTCACTTTGTATCCCAGCAGGGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR CCA 90 bp | CAAAGGAGACAGGCCTTCATATACACCCCTTATCCTCTCCACTCACAGTATGACGTCCTGTTCAAAAACTaGAGGGTTGTCATTGATATC | + |
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Preference number: 4 (lower is better) Translates to: QRRQAFIYTPYPLHSQYDVLFKN*RVVIDI Trigger: GATATCAATGACAACCCTCCAGTTTTTGAACAGGAC...GTCATACTGTGAGTGGAGAGGATAAGGGGTGTATATGAAGGCCTGTCTCCTTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR TCA 90 bp | GATTATAAATTTAAAACCCTGCTGGGATACAAAGTGAGTTTGAGGCCAACCCAGTCTACCACCTGCACATaGATTTGCAGAGTCCCTGAA | + |
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Preference number: 4 (lower is better) Translates to: DYKFKTLLGYKVSLRPTQSTTCT*ICRVPE Trigger: TTCAGGGACTCTGCAAATTCATGTGCAGGTGGTAGA...CTGGGTTGGCCTCAAACTCACTTTGTATCCCAGCAGGGTTTTAAATTTATAATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR TCA 90 bp | GATTATAAATTTAAAACCCTGCTGGGATACAAAGTGAGTTTGAGGCCAACCCAGCTGGAGGGTTGTCATTaGTATCTGTCACTAGCAGTG | + |
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Preference number: 4 (lower is better) Translates to: DYKFKTLLGYKVSLRPTQLEGCH*YLSLAV Trigger: CACTGCTAGTGACAGATATCAATGACAACCCTCCAG...CTGGGTTGGCCTCAAACTCACTTTGTATCCCAGCAGGGTTTTAAATTTATAATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR TCA 90 bp | CAAAGGAGACAGGCCTTCATATACACCCCTTATCCTCTCCACTCACAGTATGACCATTCTGATCTATCATaGACAGACTCAGAGATACAT | + |
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Preference number: 4 (lower is better) Translates to: QRRQAFIYTPYPLHSQYDHSDLS*TDSEIH Trigger: ATGTATCTCTGAGTCTGTTCATGATAGATCAGAATG...GTCATACTGTGAGTGGAGAGGATAAGGGGTGTATATGAAGGCCTGTCTCCTTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR TCA 90 bp | CCCAGGCATCTTATCAAGACCTTATCTGAAAATGGTAGAACTCATCTAGCATGCGGGGCATTGTCATTCTaGTCTATCATGAACAGACTC | + |
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Preference number: 4 (lower is better) Translates to: PRHLIKTLSENGRTHLACGALSF*SIMNRL Trigger: GAGTCTGTTCATGATAGATCAGAATGACAATGCCCC...GCATGCTAGATGAGTTCTACCATTTTCAGATAAGGTCTTGATAAGATGCCTGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR CCA 90 bp | CCCAGGCATCTTATCAAGACCTTATCTGAAAATGGTAGAACTCATCTAGCATGCTCTTCAAGCAGAGACTaGGGTGCTGACAAAAATTCC | + |
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Preference number: 4 (lower is better) Translates to: PRHLIKTLSENGRTHLACSSSRD*GADKNS Trigger: GGAATTTTTGTCAGCACCCCAGTCTCTGCTTGAAGA...GCATGCTAGATGAGTTCTACCATTTTCAGATAAGGTCTTGATAAGATGCCTGGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR GCA 90 bp | CCCAGGCATCTTATCAAGACCTTATCTGAAAATGGTAGAACTCATCTAGCATGCGATGCTGTCAGCTACTaGTATGGTAAATGTGACTGT | + |
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Preference number: 4 (lower is better) Translates to: PRHLIKTLSENGRTHLACDAVSY*YGKCDC Trigger: ACAGTCACATTTACCATAGCAGTAGCTGACAGCATC...GCATGCTAGATGAGTTCTACCATTTTCAGATAAGGTCTTGATAAGATGCCTGGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR GCA 90 bp | GATTATAAATTTAAAACCCTGCTGGGATACAAAGTGAGTTTGAGGCCAACCCAGGTCAAAGGATTGCAATaGATAGACAACTCCAGTGTC | + |
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Preference number: 4 (lower is better) Translates to: DYKFKTLLGYKVSLRPTQVKGLQ*IDNSSV Trigger: GACACTGGAGTTGTCTATGCATTGCAATCCTTTGAC...CTGGGTTGGCCTCAAACTCACTTTGTATCCCAGCAGGGTTTTAAATTTATAATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR CCA 90 bp | GATTATAAATTTAAAACCCTGCTGGGATACAAAGTGAGTTTGAGGCCAACCCAGTCTAGCTCTTCTAACTaGAATTGGGGAGTGTTGTCA | + |
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Preference number: 4 (lower is better) Translates to: DYKFKTLLGYKVSLRPTQSSSSN*NWGVLS Trigger: TGACAACACTCCCCAATTCCAGTTAGAAGAGCTAGA...CTGGGTTGGCCTCAAACTCACTTTGTATCCCAGCAGGGTTTTAAATTTATAATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| 3UTR CAA 72 bp | TATAAATTTAAAACCCTGCTGGGATACAAAGTGAGTTaGAGGCCAACCCAGGCATCTTATCAAGACCTTATC | + |
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Preference number: 4 (lower is better) Translates to: YKFKTLLGYKVS*RPTQASYQDLI Trigger: GATAAGGTCTTGATAAGATGCCTGGGTTGGCCTCAAACTCACTTTGTATCCCAGCAGGGTTTTAAATTTATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR GCA 90 bp | GATTATAAATTTAAAACCCTGCTGGGATACAAAGTGAGTTTGAGGCCAACCCAGGTTATTGTGATGTTGTaGCTAGAACTTTGTTCTCTG | + |
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Preference number: 4 (lower is better) Translates to: DYKFKTLLGYKVSLRPTQVIVML*LELCSL Trigger: CAGAGAACAAAGTTCTAGGCACAACATCACAATAAC...CTGGGTTGGCCTCAAACTCACTTTGTATCCCAGCAGGGTTTTAAATTTATAATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS CCA 90 bp | CGCTCGTGCCGGGTCTCTGGGCTTGAGAGAAACGCCAGTCAGTGTTaGGCGGGGCTTGCTGAGAAAATATTTCCTCTTTATCTTCAAGCA | + |
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Preference number: 5 (lower is better) Translates to: RSCRVSGLERNASQC*AGLAEKIFPLYLQA Trigger: TGCTTGAAGATAAAGAGGAAATATTTTCTCAGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCCCAGAGACCCGGCACGAGCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194190.2 |
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| CDS-3UTR CAA 90 bp | AACCCTGCTGGGATACAAAGTGAGTTTGAGGCCAACCCAGGCATCTTATCAAGACCCCACATCAAGGTCTaGCCCGAGAGGCAGAGGGAT | + |
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Preference number: 5 (lower is better) Translates to: NPAGIQSEFEANPGILSRPHIKV*PERQRD Trigger: ATCCCTCTGCCTCTCGGGCAAGACCTTGATGTGGGG...TCTTGATAAGATGCCTGGGTTGGCCTCAAACTCACTTTGTATCCCAGCAGGGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR CAA 90 bp | AACCCTGCTGGGATACAAAGTGAGTTTGAGGCCAACCCAGGCATCTTATCAAGAACCACCAGGCTCTGCTaGAGAGCATCTCTCTCCAGC | + |
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Preference number: 5 (lower is better) Translates to: NPAGIQSEFEANPGILSRTTRLC*RASLSS Trigger: GCTGGAGAGAGATGCTCTCAAGCAGAGCCTGGTGGT...TCTTGATAAGATGCCTGGGTTGGCCTCAAACTCACTTTGTATCCCAGCAGGGTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR CAA 90 bp | AACCCTGCTGGGATACAAAGTGAGTTTGAGGCCAACCCAGGCATCTTATCAAGATACCATCTCTGGCTGTaGTGGTCCTTCAGGTCCCTG | + |
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Preference number: 5 (lower is better) Translates to: NPAGIQSEFEANPGILSRYHLWL*WSFRSL Trigger: CAGGGACCTGAAGGACCACAACAGCCAGAGATGGTA...TCTTGATAAGATGCCTGGGTTGGCCTCAAACTCACTTTGTATCCCAGCAGGGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR CAA 90 bp | CTGCTGGGATACAAAGTGAGTTTGAGGCCAACCCAGGCATCTTATCAAGACCTTTCAACACCTACAAAGTaGGAGGCAGGCAGGCCAGTC | + |
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Preference number: 5 (lower is better) Translates to: LLGYKVSLRPTQASYQDLSTPTK*EAGRPV Trigger: GACTGGCCTGCCTGCCTCCAACTTTGTAGGTGTTGA...AAGGTCTTGATAAGATGCCTGGGTTGGCCTCAAACTCACTTTGTATCCCAGCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS CCA 90 bp | AATAGGTCTGTAGAAATGCATGCACCCCATCAACACCTACAAAGTTaGAGGCAGGCAGGCCAGTCAGTCCATTTGCTTCAGTCTGGAGCA | + |
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Preference number: 5 (lower is better) Translates to: NRSVEMHAPHQHLQS*RQAGQSVHLLQSGA Trigger: TGCTCCAGACTGAAGCAAATGGACTGACTGGCCTGCCTGCCTCCAACTTTGTAGGTGTTGATGGGGTGCATGCATTTCTACAGACCTATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000194190.2 ENSMUST00000194888.2 |
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| CDS-3UTR CAA 90 bp | CAAAGGAGACAGGCCTTCATATACACCCCTTATCCTCTCCACTCACAGTATGACGTAAATGCTGGTGGGTaGTCGTTCACATCTACCACC | + |
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Preference number: 5 (lower is better) Translates to: QRRQAFIYTPYPLHSQYDVNAGG*SFTSTT Trigger: GGTGGTAGATGTGAACGACAACCCACCAGCATTTAC...GTCATACTGTGAGTGGAGAGGATAAGGGGTGTATATGAAGGCCTGTCTCCTTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR CAA 90 bp | CTGCTGGGATACAAAGTGAGTTTGAGGCCAACCCAGGCATCTTATCAAGACCTTAGTTTAAAGGGTAGGTaGCCAGGGATGGAACATGTG | + |
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Preference number: 5 (lower is better) Translates to: LLGYKVSLRPTQASYQDLSLKGR*PGMEHV Trigger: CACATGTTCCATCCCTGGCAACCTACCCTTTAAACT...AAGGTCTTGATAAGATGCCTGGGTTGGCCTCAAACTCACTTTGTATCCCAGCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR CAA 90 bp | AACCCTGCTGGGATACAAAGTGAGTTTGAGGCCAACCCAGGCATCTTATCAAGATCAGTTGCATTCACTTaGAGTAGCCGAGTGCCTAAA | + |
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Preference number: 5 (lower is better) Translates to: NPAGIQSEFEANPGILSRSVAFT*SSRVPK Trigger: TTTAGGCACTCGGCTACTCAAAGTGAATGCAACTGA...TCTTGATAAGATGCCTGGGTTGGCCTCAAACTCACTTTGTATCCCAGCAGGGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR CAA 90 bp | AACCCTGCTGGGATACAAAGTGAGTTTGAGGCCAACCCAGGCATCTTATCAAGAACTGGAGGGTTGTCATaGATATCTGTCACTAGCAGT | + |
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Preference number: 5 (lower is better) Translates to: NPAGIQSEFEANPGILSRTGGLS*ISVTSS Trigger: ACTGCTAGTGACAGATATCAATGACAACCCTCCAGT...TCTTGATAAGATGCCTGGGTTGGCCTCAAACTCACTTTGTATCCCAGCAGGGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR CAA 90 bp | CTGCTGGGATACAAAGTGAGTTTGAGGCCAACCCAGGCATCTTATCAAGACCTTGCTGTTATTGTGATGTaGTGCCTAGAACTTTGTTCT | + |
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Preference number: 5 (lower is better) Translates to: LLGYKVSLRPTQASYQDLAVIVM*CLELCS Trigger: AGAACAAAGTTCTAGGCACAACATCACAATAACAGC...AAGGTCTTGATAAGATGCCTGGGTTGGCCTCAAACTCACTTTGTATCCCAGCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR CAA 90 bp | CAAAGGAGACAGGCCTTCATATACACCCCTTATCCTCTCCACTCACAGTATGACTCAAAAACTGGAGGGTaGTCATTGATATCTGTCACT | + |
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Preference number: 5 (lower is better) Translates to: QRRQAFIYTPYPLHSQYDSKTGG*SLISVT Trigger: AGTGACAGATATCAATGACAACCCTCCAGTTTTTGA...GTCATACTGTGAGTGGAGAGGATAAGGGGTGTATATGAAGGCCTGTCTCCTTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR CAA 90 bp | CCCAGGCATCTTATCAAGACCTTATCTGAAAATGGTAGAACTCATCTAGCATGCGTTGTTATCAGCGTCTaGATCATGCACACTGATAAG | + |
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Preference number: 5 (lower is better) Translates to: PRHLIKTLSENGRTHLACVVISV*IMHTDK Trigger: CTTATCAGTGTGCATGATCAAGACGCTGATAACAAC...GCATGCTAGATGAGTTCTACCATTTTCAGATAAGGTCTTGATAAGATGCCTGGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR CAA 90 bp | GATTATAAATTTAAAACCCTGCTGGGATACAAAGTGAGTTTGAGGCCAACCCAGGTTGTGCCTAGAACTTaGTTCTCTGTCCAGTGTTCT | + |
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Preference number: 5 (lower is better) Translates to: DYKFKTLLGYKVSLRPTQVVPRT*FSVQCS Trigger: AGAACACTGGACAGAGAACAAAGTTCTAGGCACAAC...CTGGGTTGGCCTCAAACTCACTTTGTATCCCAGCAGGGTTTTAAATTTATAATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS-3UTR CAA 90 bp | CCCAGGCATCTTATCAAGACCTTATCTGAAAATGGTAGAACTCATCTAGCATGCCTAGTGGTTCTTTATTaGATAGTTCTCCCGTGTAAG | + |
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Preference number: 5 (lower is better) Translates to: PRHLIKTLSENGRTHLACLVVLY*IVLPCK Trigger: CTTACACGGGAGAACTATCAAATAAAGAACCACTAG...GCATGCTAGATGAGTTCTACCATTTTCAGATAAGGTCTTGATAAGATGCCTGGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194888.2 |
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| CDS CAA 72 bp | CTACAAAGTTGGAGGCAGGCAGGCCAGTCAGTCCATTaGCTTCAGTCTGGAGCAAGCGTGAGGAGTACCAAT | + |
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Preference number: 6 (lower is better) Translates to: LQSWRQAGQSVH*LQSGASVRSTN Trigger: ATTGGTACTCCTCACGCTTGCTCCAGACTGAAGCAAATGGACTGACTGGCCTGCCTGCCTCCAACTTTGTAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000194190.2 ENSMUST00000194888.2 |
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| CDS CAA 90 bp | GGGTCTCTGGGCTTGAGAGAAACGCCAGTCAGTGTTGGGCGGGGCTaGCTGAGAAAATATTTCCTCTTTATCTTCAAGCAGAGACTGGGG | + |
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Preference number: 6 (lower is better) Translates to: GSLGLRETPVSVGRG*LRKYFLFIFKQRLG Trigger: CCCCAGTCTCTGCTTGAAGATAAAGAGGAAATATTTTCTCAGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCCCAGAGACCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194190.2 |
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| CDS CCA 72 bp | CGGGTCTCTGGGCTTGAGAGAAACGCCAGTCAGTGTTaGGCGGGGCTTGCTGAGAAAATATTTCCTCTTTAT | + |
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Preference number: 6 (lower is better) Translates to: RVSGLERNASQC*AGLAEKIFPLY Trigger: ATAAAGAGGAAATATTTTCTCAGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCCCAGAGACCCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194190.2 |
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| CDS CAA 72 bp | GTCTGGAGCAAGCGTGAGGAGTACCAATGTCGCAGCTaGAGCACCAAGAGCACTATTACAAAGGCTAGGAAG | + |
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Preference number: 6 (lower is better) Translates to: VWSKREEYQCRS*STKSTITKARK Trigger: CTTCCTAGCCTTTGTAATAGTGCTCTTGGTGCTCAAGCTGCGACATTGGTACTCCTCACGCTTGCTCCAGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000194190.2 ENSMUST00000194888.2 |
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| CDS TCA 72 bp | TCTGGAGCAAGCGTGAGGAGTACCAATGTCGCAGCTTaGGCACCAAGAGCACTATTACAAAGGCTAGGAAGA | + |
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Preference number: 6 (lower is better) Translates to: SGASVRSTNVAA*APRALLQRLGR Trigger: TCTTCCTAGCCTTTGTAATAGTGCTCTTGGTGCTCAAGCTGCGACATTGGTACTCCTCACGCTTGCTCCAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000194190.2 ENSMUST00000194888.2 |
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| CDS CAA 72 bp | TGTAGAAATGCATGCACCCCATCAACACCTACAAAGTaGGAGGCAGGCAGGCCAGTCAGTCCATTTGCTTCA | + |
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Preference number: 6 (lower is better) Translates to: CRNACTPSTPTK*EAGRPVSPFAS Trigger: TGAAGCAAATGGACTGACTGGCCTGCCTGCCTCCAACTTTGTAGGTGTTGATGGGGTGCATGCATTTCTACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000194190.2 ENSMUST00000194888.2 |
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| CDS CAA 72 bp | GGCTTGAGAGAAACGCCAGTCAGTGTTGGGCGGGGCTaGCTGAGAAAATATTTCCTCTTTATCTTCAAGCAG | + |
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Preference number: 6 (lower is better) Translates to: GLRETPVSVGRG*LRKYFLFIFKQ Trigger: CTGCTTGAAGATAAAGAGGAAATATTTTCTCAGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194190.2 |
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| CDS CAA 90 bp | GTTGCCAGGGATGGAACATGTGATGTGACCGTTGTTATCAGCGTCTaGATCATGCACACTGATAAGAGCAATTGTGGTCCCAGGAGGAAA | + |
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Preference number: 6 (lower is better) Translates to: VARDGTCDVTVVISV*IMHTDKSNCGPRRK Trigger: TTTCCTCCTGGGACCACAATTGCTCTTATCAGTGTGCATGATCAAGACGCTGATAACAACGGTCACATCACATGTTCCATCCCTGGCAAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000194190.2 ENSMUST00000194888.2 |
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| CDS CCA 72 bp | CCACATCAAGGTCTTGCCCGAGAGGCAGAGGGATCCTaGTACCTGGAGTCGTTATTTCACTCATTTTTAATT | + |
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Preference number: 6 (lower is better) Translates to: PHQGLAREAEGS*YLESLFHSFLI Trigger: AATTAAAAATGAGTGAAATAACGACTCCAGGTACCAGGATCCCTCTGCCTCTCGGGCAAGACCTTGATGTGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000194190.2 ENSMUST00000194888.2 |
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| CDS CAA 72 bp | GATGGAACATGTGATGTGACCGTTGTTATCAGCGTCTaGATCATGCACACTGATAAGAGCAATTGTGGTCCC | + |
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Preference number: 6 (lower is better) Translates to: DGTCDVTVVISV*IMHTDKSNCGP Trigger: GGGACCACAATTGCTCTTATCAGTGTGCATGATCAAGACGCTGATAACAACGGTCACATCACATGTTCCATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000194190.2 ENSMUST00000194888.2 |
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