Pregenerated sensors for PCDHB9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000051242Ensembl transcript IDs: ENSMUST00000057228.2
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | ACTTGTAGTCGTGAGATTATTATTCACCAAAGACACTaGACATGTAGAAAACCCACATTTAACATGTGGTAT | + |
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Preference number: 3 (lower is better) Translates to: TCSREIIIHQRH*TCRKPTFNMWY Trigger: ATACCACATGTTAAATGTGGGTTTTCTACATGTTCAGTGTCTTTGGTGAATAATAATCTCACGACTACAAGT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR TCA 90 bp | TGGTATAATGGCAGACTAAGCGTGCGTAATATGAATAAGATAAACAAAAGCGGTGGGTCCCTGCTCCACTaGCATCGACCAGGTGGCCAG | + |
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Preference number: 4 (lower is better) Translates to: WYNGRLSVRNMNKINKSGGSLLH*HRPGGQ Trigger: CTGGCCACCTGGTCGATGTCAGTGGAGCAGGGACCC...ACCGCTTTTGTTTATCTTATTCATATTACGCACGCTTAGTCTGCCATTATACCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR CCA 90 bp | TGGTATAATGGCAGACTAAGCGTGCGTAATATGAATAAGATAAACAAAAGCGGTGGTGACCAGGTAGCCTaGCTCCGCAGCTCTAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: WYNGRLSVRNMNKINKSGGDQVA*LRSSRQ Trigger: CTGCCTAGAGCTGCGGAGCCAGGCTACCTGGTCACC...ACCGCTTTTGTTTATCTTATTCATATTACGCACGCTTAGTCTGCCATTATACCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR TCA 90 bp | AAACCCACATTTAACATGTGGTATAATGGCAGACTAAGCGTGCGTAATATGAATACAGCACCTGCAGAGTaGCACTGGCAGAGCGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: KPTFNMWYNGRLSVRNMNTAPAE*HWQSAE Trigger: CTCAGCGCTCTGCCAGTGTCACTCTGCAGGTGCTGT...ATTCATATTACGCACGCTTAGTCTGCCATTATACCACATGTTAAATGTGGGTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR CCA 90 bp | TGGTATAATGGCAGACTAAGCGTGCGTAATATGAATAAGATAAACAAAAGCGGTACGTCCTCATCTTCATaGGCGGGATCCCGCGCTACC | + |
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Preference number: 4 (lower is better) Translates to: WYNGRLSVRNMNKINKSGTSSSS*AGSRAT Trigger: GGTAGCGCGGGATCCCGCCCATGAAGATGAGGACGT...ACCGCTTTTGTTTATCTTATTCATATTACGCACGCTTAGTCTGCCATTATACCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR TCA 90 bp | TGGTATAATGGCAGACTAAGCGTGCGTAATATGAATAAGATAAACAAAAGCGGTCGCCATCCAGAGCTGTaGGGGTTAAGCTCAGCTCTG | + |
|
Preference number: 4 (lower is better) Translates to: WYNGRLSVRNMNKINKSGRHPEL*GLSSAL Trigger: CAGAGCTGAGCTTAACCCTCACAGCTCTGGATGGCG...ACCGCTTTTGTTTATCTTATTCATATTACGCACGCTTAGTCTGCCATTATACCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR GCA 90 bp | AAACCCACATTTAACATGTGGTATAATGGCAGACTAAGCGTGCGTAATATGAATATCAGACAACACCCGTaGAGACCTGGCAGCCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: KPTFNMWYNGRLSVRNMNIRQHP*RPGSQL Trigger: GAGCTGGCTGCCAGGTCTGCACGGGTGTTGTCTGAT...ATTCATATTACGCACGCTTAGTCTGCCATTATACCACATGTTAAATGTGGGTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR GCA 90 bp | AAACCCACATTTAACATGTGGTATAATGGCAGACTAAGCGTGCGTAATATGAATGTCCAGCGCCCTGAGTaGAAACAGCTGCCCATTGTC | + |
|
Preference number: 4 (lower is better) Translates to: KPTFNMWYNGRLSVRNMNVQRPE*KQLPIV Trigger: GACAATGGGCAGCTGTTTGCACTCAGGGCGCTGGAC...ATTCATATTACGCACGCTTAGTCTGCCATTATACCACATGTTAAATGTGGGTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR CCA 90 bp | AATTCTATGCTACTTGAGCTACTTGTAGTCGTGAGATTATTATTCACCAAAGACACGCGCACCAGAGCCTaGCTGCTAAGTGGAGGTGAG | + |
|
Preference number: 4 (lower is better) Translates to: NSMLLELLVVVRLLFTKDTRTRA*LLSGGE Trigger: CTCACCTCCACTTAGCAGCCAGGCTCTGGTGCGCGT...GTCTTTGGTGAATAATAATCTCACGACTACAAGTAGCTCAAGTAGCATAGAATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR TCA 90 bp | ATGTGGTATAATGGCAGACTAAGCGTGCGTAATATGAATAAGATAAACAAAAGCTGGTGTGCCATGTTGTaGGCCTGGGTGTGCCCATGT | + |
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Preference number: 4 (lower is better) Translates to: MWYNGRLSVRNMNKINKSWCAML*AWVCPC Trigger: ACATGGGCACACCCAGGCTCACAACATGGCACACCA...GCTTTTGTTTATCTTATTCATATTACGCACGCTTAGTCTGCCATTATACCACAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR GCA 90 bp | AATTCTATGCTACTTGAGCTACTTGTAGTCGTGAGATTATTATTCACCAAAGACAAGCTCAGCTCTGCCTaGTCCTCTCTGTCCAGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: NSMLLELLVVVRLLFTKDKLSSA*SSLSRP Trigger: AGGCCTGGACAGAGAGGAGCAGGCAGAGCTGAGCTT...GTCTTTGGTGAATAATAATCTCACGACTACAAGTAGCTCAAGTAGCATAGAATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR CCA 90 bp | AATTCTATGCTACTTGAGCTACTTGTAGTCGTGAGATTATTATTCACCAAAGACGCAGTAGCCTGTGCTTaGGCACATCGCGCTCACTCA | + |
|
Preference number: 4 (lower is better) Translates to: NSMLLELLVVVRLLFTKDAVACA*AHRAHS Trigger: TGAGTGAGCGCGATGTGCCCAAGCACAGGCTACTGC...GTCTTTGGTGAATAATAATCTCACGACTACAAGTAGCTCAAGTAGCATAGAATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR TCA 90 bp | ATGTGGTATAATGGCAGACTAAGCGTGCGTAATATGAATAAGATAAACAAAAGCGCTCTCCATTGTCCTTaGCCACCAGCAGTAGCCTGT | + |
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Preference number: 4 (lower is better) Translates to: MWYNGRLSVRNMNKINKSALHCP*PPAVAC Trigger: ACAGGCTACTGCTGGTGGTCAAGGACAATGGAGAGC...GCTTTTGTTTATCTTATTCATATTACGCACGCTTAGTCTGCCATTATACCACAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR GCA 90 bp | AATTCTATGCTACTTGAGCTACTTGTAGTCGTGAGATTATTATTCACCAAAGACTCAACAACCTGGTGGTaGGCACCTCTCCATTGTGCG | + |
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Preference number: 4 (lower is better) Translates to: NSMLLELLVVVRLLFTKDSTTWW*APLHCA Trigger: CGCACAATGGAGAGGTGCGCACCACCAGGTTGTTGA...GTCTTTGGTGAATAATAATCTCACGACTACAAGTAGCTCAAGTAGCATAGAATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR CCA 90 bp | AAACCCACATTTAACATGTGGTATAATGGCAGACTAAGCGTGCGTAATATGAATGCCCACCTCCATCTATaGCCTCGATTTCCACATGGT | + |
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Preference number: 4 (lower is better) Translates to: KPTFNMWYNGRLSVRNMNAHLHL*PRFPHG Trigger: ACCATGTGGAAATCGAGGCCATAGATGGAGGTGGGC...ATTCATATTACGCACGCTTAGTCTGCCATTATACCACATGTTAAATGTGGGTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR CCA 90 bp | AAACCCACATTTAACATGTGGTATAATGGCAGACTAAGCGTGCGTAATATGAATCTGACATCGACCAGGTaGCCAGGAAAGTGTTCACCA | + |
|
Preference number: 4 (lower is better) Translates to: KPTFNMWYNGRLSVRNMNLTSTR*PGKCSP Trigger: TGGTGAACACTTTCCTGGCCACCTGGTCGATGTCAG...ATTCATATTACGCACGCTTAGTCTGCCATTATACCACATGTTAAATGTGGGTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR TCA 90 bp | AATTCTATGCTACTTGAGCTACTTGTAGTCGTGAGATTATTATTCACCAAAGACGACAGAGCTGGTCAGTaGAGATATGGTCAGCTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: NSMLLELLVVVRLLFTKDDRAGQ*RYGQLW Trigger: CCAGAGCTGACCATATCTTCACTGACCAGCTCTGTC...GTCTTTGGTGAATAATAATCTCACGACTACAAGTAGCTCAAGTAGCATAGAATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR TCA 90 bp | TGGTATAATGGCAGACTAAGCGTGCGTAATATGAATAAGATAAACAAAAGCGGTTGGGTTTCAGGAACTTaGACTCACCAGTCCCAGAGT | + |
|
Preference number: 4 (lower is better) Translates to: WYNGRLSVRNMNKINKSGWVSGT*THQSQS Trigger: ACTCTGGGACTGGTGAGTTCAAGTTCCTGAAACCCA...ACCGCTTTTGTTTATCTTATTCATATTACGCACGCTTAGTCTGCCATTATACCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR GCA 90 bp | TGGTATAATGGCAGACTAAGCGTGCGTAATATGAATAAGATAAACAAAAGCGGTAGAGTCACCTGGAAATaGAGCACACAGGGATCCACA | + |
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Preference number: 4 (lower is better) Translates to: WYNGRLSVRNMNKINKSGRVTWK*STQGST Trigger: TGTGGATCCCTGTGTGCTGCATTTCCAGGTGACTCT...ACCGCTTTTGTTTATCTTATTCATATTACGCACGCTTAGTCTGCCATTATACCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR GCA 90 bp | ATGTGGTATAATGGCAGACTAAGCGTGCGTAATATGAATAAGATAAACAAAAGCTCCACTAACAGCACCTaGAGAGTGACACTGGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: MWYNGRLSVRNMNKINKSSTNST*RVTLAE Trigger: CTCTGCCAGTGTCACTCTGCAGGTGCTGTTAGTGGA...GCTTTTGTTTATCTTATTCATATTACGCACGCTTAGTCTGCCATTATACCACAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR CCA 90 bp | AATTCTATGCTACTTGAGCTACTTGTAGTCGTGAGATTATTATTCACCAAAGACCCAGAGAGACCTCTCTaGCCCTTCTGCACAGTCTTA | + |
|
Preference number: 4 (lower is better) Translates to: NSMLLELLVVVRLLFTKDPERPL*PFCTVL Trigger: TAAGACTGTGCAGAAGGGCCAGAGAGGTCTCTCTGG...GTCTTTGGTGAATAATAATCTCACGACTACAAGTAGCTCAAGTAGCATAGAATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR TCA 90 bp | ATGTGGTATAATGGCAGACTAAGCGTGCGTAATATGAATAAGATAAACAAAAGCACTTGCCTGTTTAGGTaGATTCTCCCCAGCTTCTCC | + |
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Preference number: 4 (lower is better) Translates to: MWYNGRLSVRNMNKINKSTCLFR*ILPSFS Trigger: GGAGAAGCTGGGGAGAATTCACCTAAACAGGCAAGT...GCTTTTGTTTATCTTATTCATATTACGCACGCTTAGTCTGCCATTATACCACAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR GCA 90 bp | ATGTGGTATAATGGCAGACTAAGCGTGCGTAATATGAATAAGATAAACAAAAGCAAACTCTCCCAAAGTTaGCAGCATCTGCATCCCGTG | + |
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Preference number: 4 (lower is better) Translates to: MWYNGRLSVRNMNKINKSKLSQS*QHLHPV Trigger: CACGGGATGCAGATGCTGGCAACTTTGGGAGAGTTT...GCTTTTGTTTATCTTATTCATATTACGCACGCTTAGTCTGCCATTATACCACAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR TCA 90 bp | AATTCTATGCTACTTGAGCTACTTGTAGTCGTGAGATTATTATTCACCAAAGACAATAAGGGTTGGGGCTaGCTGTGTATTGTTGAAGCC | + |
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Preference number: 4 (lower is better) Translates to: NSMLLELLVVVRLLFTKDNKGWG*LCIVEA Trigger: GGCTTCAACAATACACAGTCAGCCCCAACCCTTATT...GTCTTTGGTGAATAATAATCTCACGACTACAAGTAGCTCAAGTAGCATAGAATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR CCA 90 bp | AAACCCACATTTAACATGTGGTATAATGGCAGACTAAGCGTGCGTAATATGAATTTTTCAAGAGTCACCTaGAAATGCAGCACACAGGGA | + |
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Preference number: 4 (lower is better) Translates to: KPTFNMWYNGRLSVRNMNFSRVT*KCSTQG Trigger: TCCCTGTGTGCTGCATTTCCAGGTGACTCTTGAAAA...ATTCATATTACGCACGCTTAGTCTGCCATTATACCACATGTTAAATGTGGGTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR CCA 90 bp | TGGTATAATGGCAGACTAAGCGTGCGTAATATGAATAAGATAAACAAAAGCGGTGAGCAGTTCTCTATCTaGGAATTCTGGAGCATGATC | + |
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Preference number: 4 (lower is better) Translates to: WYNGRLSVRNMNKINKSGEQFSI*EFWSMI Trigger: GATCATGCTCCAGAATTCCCAGATAGAGAACTGCTC...ACCGCTTTTGTTTATCTTATTCATATTACGCACGCTTAGTCTGCCATTATACCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR CCA 90 bp | AATTCTATGCTACTTGAGCTACTTGTAGTCGTGAGATTATTATTCACCAAAGACTGGTCAGTGAAGATATaGTCAGCTCTGGGGCATTGT | + |
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Preference number: 4 (lower is better) Translates to: NSMLLELLVVVRLLFTKDWSVKI*SALGHC Trigger: ACAATGCCCCAGAGCTGACCATATCTTCACTGACCA...GTCTTTGGTGAATAATAATCTCACGACTACAAGTAGCTCAAGTAGCATAGAATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR CCA 90 bp | AAACCCACATTTAACATGTGGTATAATGGCAGACTAAGCGTGCGTAATATGAATTTTCTATCCCAGCATTaGGGATCATGGGTTTCAGGA | + |
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Preference number: 4 (lower is better) Translates to: KPTFNMWYNGRLSVRNMNFLSQH*GSWVSG Trigger: TCCTGAAACCCATGATCCCCAATGCTGGGATAGAAA...ATTCATATTACGCACGCTTAGTCTGCCATTATACCACATGTTAAATGTGGGTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR GCA 90 bp | AATTCTATGCTACTTGAGCTACTTGTAGTCGTGAGATTATTATTCACCAAAGACGAGGAAATGCATGCTTaGATCCAATCCTGTAGCAGT | + |
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Preference number: 4 (lower is better) Translates to: NSMLLELLVVVRLLFTKDEEMHA*IQSCSS Trigger: ACTGCTACAGGATTGGATGCAAGCATGCATTTCCTC...GTCTTTGGTGAATAATAATCTCACGACTACAAGTAGCTCAAGTAGCATAGAATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR GCA 90 bp | TGGTATAATGGCAGACTAAGCGTGCGTAATATGAATAAGATAAACAAAAGCGGTGAATTGTTGGCTCACTaGAAACCTGAACCAAAACCA | + |
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Preference number: 4 (lower is better) Translates to: WYNGRLSVRNMNKINKSGELLAH*KPEPKP Trigger: TGGTTTTGGTTCAGGTTTGCAGTGAGCCAACAATTC...ACCGCTTTTGTTTATCTTATTCATATTACGCACGCTTAGTCTGCCATTATACCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR GCA 90 bp | AAACCCACATTTAACATGTGGTATAATGGCAGACTAAGCGTGCGTAATATGAATGAAAATTGTGTGCCTTaGTGGCTGTTCTCTGGTATT | + |
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Preference number: 4 (lower is better) Translates to: KPTFNMWYNGRLSVRNMNENCVP*WLFSGI Trigger: AATACCAGAGAACAGCCAGCAAGGCACACAATTTTC...ATTCATATTACGCACGCTTAGTCTGCCATTATACCACATGTTAAATGTGGGTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR CCA 90 bp | TGGTATAATGGCAGACTAAGCGTGCGTAATATGAATAAGATAAACAAAAGCGGTCCCACATCCAAGTCCTaGGCTAAATTCAGTGAAAAT | + |
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Preference number: 4 (lower is better) Translates to: WYNGRLSVRNMNKINKSGPTSKS*AKFSEN Trigger: ATTTTCACTGAATTTAGCCCAGGACTTGGATGTGGG...ACCGCTTTTGTTTATCTTATTCATATTACGCACGCTTAGTCTGCCATTATACCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR CCA 90 bp | AATTCTATGCTACTTGAGCTACTTGTAGTCGTGAGATTATTATTCACCAAAGACTTTCTGGGACAGAGCTaGTCAGTGAAGATATGGTCA | + |
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Preference number: 4 (lower is better) Translates to: NSMLLELLVVVRLLFTKDFLGQS*SVKIWS Trigger: TGACCATATCTTCACTGACCAGCTCTGTCCCAGAAA...GTCTTTGGTGAATAATAATCTCACGACTACAAGTAGCTCAAGTAGCATAGAATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR GCA 90 bp | ATGTGGTATAATGGCAGACTAAGCGTGCGTAATATGAATAAGATAAACAAAAGCTCCATGATGAGGAAATaGATGCTTGCATCCAATCCT | + |
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Preference number: 4 (lower is better) Translates to: MWYNGRLSVRNMNKINKSSMMRK*MLASNP Trigger: AGGATTGGATGCAAGCATGCATTTCCTCATCATGGA...GCTTTTGTTTATCTTATTCATATTACGCACGCTTAGTCTGCCATTATACCACAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR CCA 90 bp | ATGTGGTATAATGGCAGACTAAGCGTGCGTAATATGAATAAGATAAACAAAAGCAAGCTATCCCTGCAGTaGGGACTTTCCATAATTTCT | + |
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Preference number: 4 (lower is better) Translates to: MWYNGRLSVRNMNKINKSKLSLQ*GLSIIS Trigger: AGAAATTATGGAAAGTCCCCACTGCAGGGATAGCTT...GCTTTTGTTTATCTTATTCATATTACGCACGCTTAGTCTGCCATTATACCACAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR TCA 90 bp | ATGTGGTATAATGGCAGACTAAGCGTGCGTAATATGAATAAGATAAACAAAAGCTTGTTGGATTTCATCTaGTGCTTGAAAGAAGCCATA | + |
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Preference number: 4 (lower is better) Translates to: MWYNGRLSVRNMNKINKSLLDFI*CLKEAI Trigger: TATGGCTTCTTTCAAGCATCAGATGAAATCCAACAA...GCTTTTGTTTATCTTATTCATATTACGCACGCTTAGTCTGCCATTATACCACAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR CCA 90 bp | ATGTGGTATAATGGCAGACTAAGCGTGCGTAATATGAATAAGATAAACAAAAGCTTGAAAATATTGCACTaGCTTTTCAAGAGTCACCTG | + |
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Preference number: 4 (lower is better) Translates to: MWYNGRLSVRNMNKINKSLKILH*LFKSHL Trigger: CAGGTGACTCTTGAAAAGCCAGTGCAATATTTTCAA...GCTTTTGTTTATCTTATTCATATTACGCACGCTTAGTCTGCCATTATACCACAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR CAA 90 bp | ATGTGGTATAATGGCAGACTAAGCGTGCGTAATATGAATAAGATAAACAAAAGCAGCAGTAGCCTGTGCTaGGGCACATCGCGCTCACTC | + |
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Preference number: 5 (lower is better) Translates to: MWYNGRLSVRNMNKINKSSSSLC*GTSRSL Trigger: GAGTGAGCGCGATGTGCCCAAGCACAGGCTACTGCT...GCTTTTGTTTATCTTATTCATATTACGCACGCTTAGTCTGCCATTATACCACAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR CAA 90 bp | AAACCCACATTTAACATGTGGTATAATGGCAGACTAAGCGTGCGTAATATGAATGGCTCTCCATTGTCCTaGACCACCAGCAGTAGCCTG | + |
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Preference number: 5 (lower is better) Translates to: KPTFNMWYNGRLSVRNMNGSPLS*TTSSSL Trigger: CAGGCTACTGCTGGTGGTCAAGGACAATGGAGAGCC...ATTCATATTACGCACGCTTAGTCTGCCATTATACCACATGTTAAATGTGGGTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR CAA 90 bp | AAACCCACATTTAACATGTGGTATAATGGCAGACTAAGCGTGCGTAATATGAATGAAACTCTCCCAAAGTaGCCAGCATCTGCATCCCGT | + |
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Preference number: 5 (lower is better) Translates to: KPTFNMWYNGRLSVRNMNETLPK*PASASR Trigger: ACGGGATGCAGATGCTGGCAACTTTGGGAGAGTTTC...ATTCATATTACGCACGCTTAGTCTGCCATTATACCACATGTTAAATGTGGGTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR CAA 90 bp | ATGTGGTATAATGGCAGACTAAGCGTGCGTAATATGAATAAGATAAACAAAAGCATGGGTTTCAGGAACTaGAACTCACCAGTCCCAGAG | + |
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Preference number: 5 (lower is better) Translates to: MWYNGRLSVRNMNKINKSMGFRN*NSPVPE Trigger: CTCTGGGACTGGTGAGTTCAAGTTCCTGAAACCCAT...GCTTTTGTTTATCTTATTCATATTACGCACGCTTAGTCTGCCATTATACCACAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR CAA 90 bp | TGGTATAATGGCAGACTAAGCGTGCGTAATATGAATAAGATAAACAAAAGCGGTATTTCTATCCCAGCATaGGGGATCATGGGTTTCAGG | + |
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Preference number: 5 (lower is better) Translates to: WYNGRLSVRNMNKINKSGISIPA*GIMGFR Trigger: CCTGAAACCCATGATCCCCAATGCTGGGATAGAAAT...ACCGCTTTTGTTTATCTTATTCATATTACGCACGCTTAGTCTGCCATTATACCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS-3UTR CAA 90 bp | TGGTATAATGGCAGACTAAGCGTGCGTAATATGAATAAGATAAACAAAAGCGGTTCAGGAGCATTGTCATaGATATCCATGATCAGGATT | + |
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Preference number: 5 (lower is better) Translates to: WYNGRLSVRNMNKINKSGSGALS*ISMIRI Trigger: AATCCTGATCATGGATATCAATGACAATGCTCCTGA...ACCGCTTTTGTTTATCTTATTCATATTACGCACGCTTAGTCTGCCATTATACCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS TCA 90 bp | GTTTCCTCTAAGATAGAGTATCGAATTGTTGGCTCACTGCAAACCTaGACCAAAACCATCATAAAAATAAATGCCATTACTTGCCTGTTT | + |
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Preference number: 5 (lower is better) Translates to: VSSKIEYRIVGSLQT*TKTIIKINAITCLF Trigger: AAACAGGCAAGTAATGGCATTTATTTTTATGATGGTTTTGGTTCAGGTTTGCAGTGAGCCAACAATTCGATACTCTATCTTAGAGGAAAC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS CAA 72 bp | TCTATCCCAGCATTGGGGATCATGGGTTTCAGGAACTaGAACTCACCAGTCCCAGAGTCGCCCCTCAGACAC | + |
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Preference number: 6 (lower is better) Translates to: SIPALGIMGFRN*NSPVPESPLRH Trigger: GTGTCTGAGGGGCGACTCTGGGACTGGTGAGTTCAAGTTCCTGAAACCCATGATCCCCAATGCTGGGATAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS GCA 72 bp | AAGTCCTGGGCTAAATTCAGTGAAAATTGTGTGCCTTaGTGGCTGTTCTCTGGTATTCTCAAGAGCAGTTCT | + |
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Preference number: 6 (lower is better) Translates to: KSWAKFSENCVP*WLFSGILKSSS Trigger: AGAACTGCTCTTGAGAATACCAGAGAACAGCCAGCAAGGCACACAATTTTCACTGAATTTAGCCCAGGACTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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| CDS TCA 72 bp | AAGATAGAGTATCGAATTGTTGGCTCACTGCAAACCTaGACCAAAACCATCATAAAAATAAATGCCATTACT | + |
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Preference number: 6 (lower is better) Translates to: KIEYRIVGSLQT*TKTIIKINAIT Trigger: AGTAATGGCATTTATTTTTATGATGGTTTTGGTTCAGGTTTGCAGTGAGCCAACAATTCGATACTCTATCTT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057228.2 |
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