Pregenerated sensors for PCDHB8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045876Ensembl transcript IDs: ENSMUST00000051163.3, ENSMUST00000192867.2
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CAAACACATGCCTCCCTAAATGTCTGCTCATGCAAAATGAAAGCATaGTCGGAGACCTACAATGGCTTAAGTCAAGGGATGTCATTTCTG | + |
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Preference number: 1 (lower is better) Translates to: QTHASLNVCSCKMKA*SETYNGLSQGMSFL Trigger: CAGAAATGACATCCCTTGACTTAAGCCATTGTAGGTCTCCGAGCATGCTTTCATTTTGCATGAGCAGACATTTAGGGAGGCATGTGTTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| 3UTR-3UTR GCA 90 bp | GAGACTGATGGGGAGGAAGCAGTGGGATTACAGAAGGTGGTAATTAGGAGAATGATAAACGCTGTACTTTaGACAGTTAATGCACAGCAA | + |
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Preference number: 2 (lower is better) Translates to: ETDGEEAVGLQKVVIRRMINAVL*TVNAQQ Trigger: TTGCTGTGCATTAACTGTGCAAAGTACAGCGTTTAT...CATTCTCCTAATTACCACCTTCTGTAATCCCACTGCTTCCTCCCCATCAGTCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| 3UTR-3UTR GCA 90 bp | TCCCTAAATGTCTGCTCATGCAAAATGAAAGCATGCTCGGAGACCTACAATGGCTCATTTCTGGTACATTaGAGTAGCAATTTAGGCTCG | + |
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Preference number: 2 (lower is better) Translates to: SLNVCSCKMKACSETYNGSFLVH*SSNLGS Trigger: CGAGCCTAAATTGCTACTGCAATGTACCAGAAATGA...GCCATTGTAGGTCTCCGAGCATGCTTTCATTTTGCATGAGCAGACATTTAGGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| 3UTR-3UTR CCA 90 bp | TCCCTAAATGTCTGCTCATGCAAAATGAAAGCATGCTCGGAGACCTACAATGGCTATGTACACTATCTCTaGAAATGTCACAATAAACGC | + |
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Preference number: 2 (lower is better) Translates to: SLNVCSCKMKACSETYNGYVHYL*KCHNKR Trigger: GCGTTTATTGTGACATTTCCAGAGATAGTGTACATA...GCCATTGTAGGTCTCCGAGCATGCTTTCATTTTGCATGAGCAGACATTTAGGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| 3UTR-3UTR TCA 90 bp | ATTAGGAGAATGTTATCATGGTGTGGTATGTACACTATCTCTGGAAATGTCACATGCATAGCCTCAACATaGTACAATTTGAAGGGGGTA | + |
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Preference number: 2 (lower is better) Translates to: IRRMLSWCGMYTISGNVTCIAST*YNLKGV Trigger: TACCCCCTTCAAATTGTATCATGTTGAGGCTATGCA...TGTGACATTTCCAGAGATAGTGTACATACCACACCATGATAACATTCTCCTAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| 3UTR GCA 72 bp | GCCTCCCTAAATGTCTGCTCATGCAAAATGAAAGCATaGTCGGAGACCTACAATGGCTTAAGTCAAGGGATG | + |
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Preference number: 3 (lower is better) Translates to: ASLNVCSCKMKA*SETYNGLSQGM Trigger: CATCCCTTGACTTAAGCCATTGTAGGTCTCCGAGCATGCTTTCATTTTGCATGAGCAGACATTTAGGGAGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| 3UTR GCA 72 bp | ATCATCCAAACACATGCCTCCCTAAATGTCTGCTCATaGAAAATGAAAGCATGCTCGGAGACCTACAATGGC | + |
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Preference number: 3 (lower is better) Translates to: IIQTHASLNVCS*KMKACSETYNG Trigger: GCCATTGTAGGTCTCCGAGCATGCTTTCATTTTGCATGAGCAGACATTTAGGGAGGCATGTGTTTGGATGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| 3UTR TCA 72 bp | GCCAGTTTGTGTACAAAAGATGTAAAATATGACCGGTaGCTGTATCTTACGTTCACACTTGATCAAAGCTGC | + |
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Preference number: 3 (lower is better) Translates to: ASLCTKDVKYDR*LYLTFTLDQSC Trigger: GCAGCTTTGATCAAGTGTGAACGTAAGATACAGTCACCGGTCATATTTTACATCTTTTGTACACAAACTGGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| 3UTR GCA 72 bp | AATGGCTTAAGTCAAGGGATGTCATTTCTGGTACATTaGAGTAGCAATTTAGGCTCGTATACAAGCAAACAA | + |
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Preference number: 3 (lower is better) Translates to: NGLSQGMSFLVH*SSNLGSYTSKQ Trigger: TTGTTTGCTTGTATACGAGCCTAAATTGCTACTGCAATGTACCAGAAATGACATCCCTTGACTTAAGCCATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| 3UTR CCA 72 bp | GAGAATGTTATCATGGTGTGGTATGTACACTATCTCTaGAAATGTCACAATAAACGCTGTACTTTGCACAGT | + |
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Preference number: 3 (lower is better) Translates to: ENVIMVWYVHYL*KCHNKRCTLHS Trigger: ACTGTGCAAAGTACAGCGTTTATTGTGACATTTCCAGAGATAGTGTACATACCACACCATGATAACATTCTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| 3UTR CCA 72 bp | GGATTACAGAAGGTGGTAATTAGGAGAATGTTATCATaGTGTGGTATGTACACTATCTCTGGAAATGTCACA | + |
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Preference number: 3 (lower is better) Translates to: GLQKVVIRRMLS*CGMYTISGNVT Trigger: TGTGACATTTCCAGAGATAGTGTACATACCACACCATGATAACATTCTCCTAATTACCACCTTCTGTAATCC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR GCA 90 bp | TGCCTCCCTAAATGTCTGCTCATGCAAAATGAAAGCATGCTCGGAGACCTACAAGAGGCAAGGCCCAGCTaGTGGTCATGGGGCGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: CLPKCLLMQNESMLGDLQEARPS*WSWGGS Trigger: GCTGCCGCCCCATGACCAGCAGCTGGGCCTTGCCTC...TTGTAGGTCTCCGAGCATGCTTTCATTTTGCATGAGCAGACATTTAGGGAGGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR TCA 90 bp | TATCATCCAAACACATGCCTCCCTAAATGTCTGCTCATGCAAAATGAAAGCATGGCGCACCAGAGCCTCTaGGCTGAGCGCGGGCGAGCC | + |
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Preference number: 4 (lower is better) Translates to: YHPNTCLPKCLLMQNESMAHQSL*AERGRA Trigger: GGCTCGCCCGCGCTCAGCTCAGAGGCTCTGGTGCGC...CATGCTTTCATTTTGCATGAGCAGACATTTAGGGAGGCATGTGTTTGGATGATA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR GCA 90 bp | GAGACTGATGGGGAGGAAGCAGTGGGATTACAGAAGGTGGTAATTAGGAGAATGCGCACTTCGCCATTGTaGGCCCACACGCTGAACAGC | + |
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Preference number: 4 (lower is better) Translates to: ETDGEEAVGLQKVVIRRMRTSPL*AHTLNS Trigger: GCTGTTCAGCGTGTGGGCGCACAATGGCGAAGTGCG...CATTCTCCTAATTACCACCTTCTGTAATCCCACTGCTTCCTCCCCATCAGTCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR CCA 90 bp | ATCCAAACACATGCCTCCCTAAATGTCTGCTCATGCAAAATGAAAGCATGCTCGGCAAGGCCCAGCTGCTaGTCATGGGGCGGCAGCAAC | + |
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Preference number: 4 (lower is better) Translates to: IQTHASLNVCSCKMKACSARPSC*SWGGSN Trigger: GTTGCTGCCGCCCCATGACCAGCAGCTGGGCCTTGC...CGAGCATGCTTTCATTTTGCATGAGCAGACATTTAGGGAGGCATGTGTTTGGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR TCA 90 bp | TATTGCACTCTAACACAAGAAGCCCATGAAAGCAAAGAGGGGCTTTTAGGAGACCTTCCTGTGTGGGGTTaGGCGCCACCTCTGGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: YCTLTQEAHESKEGLLGDLPVWG*APPLAE Trigger: CTCTGCCAGAGGTGGCGCTCAACCCCACACAGGAAG...GTCTCCTAAAAGCCCCTCTTTGCTTTCATGGGCTTCTTGTGTTAGAGTGCAATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR CCA 90 bp | TCCCTAAATGTCTGCTCATGCAAAATGAAAGCATGCTCGGAGACCTACAATGGCTGTCCCAGACTTGGGTaGAGCTCCGCCATCCAGAGC | + |
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Preference number: 4 (lower is better) Translates to: SLNVCSCKMKACSETYNGCPRLG*SSAIQS Trigger: GCTCTGGATGGCGGAGCTCCACCCAAGTCTGGGACA...GCCATTGTAGGTCTCCGAGCATGCTTTCATTTTGCATGAGCAGACATTTAGGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR GCA 90 bp | TCCCTAAATGTCTGCTCATGCAAAATGAAAGCATGCTCGGAGACCTACAATGGCTGGGCAGCAGCTCAGTaGAGGGCGCAGAAGCGTTTT | + |
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Preference number: 4 (lower is better) Translates to: SLNVCSCKMKACSETYNGWAAAQ*RAQKRF Trigger: AAAACGCTTCTGCGCCCTGCACTGAGCTGCTGCCCA...GCCATTGTAGGTCTCCGAGCATGCTTTCATTTTGCATGAGCAGACATTTAGGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR TCA 90 bp | TGCCTCCCTAAATGTCTGCTCATGCAAAATGAAAGCATGCTCGGAGACCTACAACCTATGTCAGGGTCCTaGGCTGCCTTCAGAGGAAAC | + |
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Preference number: 4 (lower is better) Translates to: CLPKCLLMQNESMLGDLQPMSGS*AAFRGN Trigger: GTTTCCTCTGAAGGCAGCTCAGGACCCTGACATAGG...TTGTAGGTCTCCGAGCATGCTTTCATTTTGCATGAGCAGACATTTAGGGAGGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR GCA 90 bp | TGCCTCCCTAAATGTCTGCTCATGCAAAATGAAAGCATGCTCGGAGACCTACAAGAGCCCCAGATCTTGTaGCAGGTTAGCCACCAAGTA | + |
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Preference number: 4 (lower is better) Translates to: CLPKCLLMQNESMLGDLQEPQIL*QVSHQV Trigger: TACTTGGTGGCTAACCTGGCACAAGATCTGGGGCTC...TTGTAGGTCTCCGAGCATGCTTTCATTTTGCATGAGCAGACATTTAGGGAGGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR TCA 90 bp | GAGACTGATGGGGAGGAAGCAGTGGGATTACAGAAGGTGGTAATTAGGAGAATGAATGGAGGTTGGGACTaGCTGTGTAGTTCTGAACAG | + |
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Preference number: 4 (lower is better) Translates to: ETDGEEAVGLQKVVIRRMNGGWD*LCSSEQ Trigger: CTGTTCAGAACTACACAGTCAGTCCCAACCTCCATT...CATTCTCCTAATTACCACCTTCTGTAATCCCACTGCTTCCTCCCCATCAGTCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR TCA 90 bp | TCCCTAAATGTCTGCTCATGCAAAATGAAAGCATGCTCGGAGACCTACAATGGCCTGGGTCAGAGACACTaGAAACAGCAACTACAGCCT | + |
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Preference number: 4 (lower is better) Translates to: SLNVCSCKMKACSETYNGLGQRH*KQQLQP Trigger: AGGCTGTAGTTGCTGTTTTCAGTGTCTCTGACCCAG...GCCATTGTAGGTCTCCGAGCATGCTTTCATTTTGCATGAGCAGACATTTAGGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR TCA 90 bp | GAGACTGATGGGGAGGAAGCAGTGGGATTACAGAAGGTGGTAATTAGGAGAATGCATGAACTTGAAATCTaGGGTCCCAGAGTCCTCAGT | + |
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Preference number: 4 (lower is better) Translates to: ETDGEEAVGLQKVVIRRMHELEI*GPRVLS Trigger: ACTGAGGACTCTGGGACCTCAGATTTCAAGTTCATG...CATTCTCCTAATTACCACCTTCTGTAATCCCACTGCTTCCTCCCCATCAGTCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR TCA 90 bp | TATTGCACTCTAACACAAGAAGCCCATGAAAGCAAAGAGGGGCTTTTAGGAGACCAGGAGCATTATCGTTaGTGTCGGACACTTGCACTG | + |
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Preference number: 4 (lower is better) Translates to: YCTLTQEAHESKEGLLGDQEHYR*CRTLAL Trigger: CAGTGCAAGTGTCCGACATCAACGATAATGCTCCTG...GTCTCCTAAAAGCCCCTCTTTGCTTTCATGGGCTTCTTGTGTTAGAGTGCAATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR GCA 90 bp | GAGACTGATGGGGAGGAAGCAGTGGGATTACAGAAGGTGGTAATTAGGAGAATGCTCTCTGCATCAAGCTaGAAGAGCTCTTTGTTACCA | + |
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Preference number: 4 (lower is better) Translates to: ETDGEEAVGLQKVVIRRMLSASS*KSSLLP Trigger: TGGTAACAAAGAGCTCTTGCAGCTTGATGCAGAGAG...CATTCTCCTAATTACCACCTTCTGTAATCCCACTGCTTCCTCCCCATCAGTCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR CCA 90 bp | TCCCTAAATGTCTGCTCATGCAAAATGAAAGCATGCTCGGAGACCTACAATGGCGTAACGACATGGAAATaGAGGTTGGGACTGACTGTG | + |
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Preference number: 4 (lower is better) Translates to: SLNVCSCKMKACSETYNGVTTWK*RLGLTV Trigger: CACAGTCAGTCCCAACCTCCATTTCCATGTCGTTAC...GCCATTGTAGGTCTCCGAGCATGCTTTCATTTTGCATGAGCAGACATTTAGGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR CCA 90 bp | ATCCAAACACATGCCTCCCTAAATGTCTGCTCATGCAAAATGAAAGCATGCTCGCTCCGGAGCATTTTCTaGGATGGAACTAGTGAGCGA | + |
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Preference number: 4 (lower is better) Translates to: IQTHASLNVCSCKMKACSLRSIF*DGTSER Trigger: TCGCTCACTAGTTCCATCCCAGAAAATGCTCCGGAG...CGAGCATGCTTTCATTTTGCATGAGCAGACATTTAGGGAGGCATGTGTTTGGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR TCA 90 bp | ATCCAAACACATGCCTCCCTAAATGTCTGCTCATGCAAAATGAAAGCATGCTCGCAGGGTTTTCTAGTATaGTCTGGAAGTGCAGCACAC | + |
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Preference number: 4 (lower is better) Translates to: IQTHASLNVCSCKMKACSQGFLV*SGSAAH Trigger: GTGTGCTGCACTTCCAGATCATACTAGAAAACCCTG...CGAGCATGCTTTCATTTTGCATGAGCAGACATTTAGGGAGGCATGTGTTTGGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR CCA 90 bp | TATTGCACTCTAACACAAGAAGCCCATGAAAGCAAAGAGGGGCTTTTAGGAGACCAGTGCTTCGCGATCTaGTTTTTCCTTCAGGAGCAA | + |
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Preference number: 4 (lower is better) Translates to: YCTLTQEAHESKEGLLGDQCFAI*FFLQEQ Trigger: TTGCTCCTGAAGGAAAAACCAGATCGCGAAGCACTG...GTCTCCTAAAAGCCCCTCTTTGCTTTCATGGGCTTCTTGTGTTAGAGTGCAATA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR CCA 90 bp | TGCCTCCCTAAATGTCTGCTCATGCAAAATGAAAGCATGCTCGGAGACCTACAAAGGAAACACAGTCCCTaGCTGGGCAATTTCTTGAAT | + |
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Preference number: 4 (lower is better) Translates to: CLPKCLLMQNESMLGDLQRKHSP*LGNFLN Trigger: ATTCAAGAAATTGCCCAGCCAGGGACTGTGTTTCCT...TTGTAGGTCTCCGAGCATGCTTTCATTTTGCATGAGCAGACATTTAGGGAGGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR CCA 90 bp | TCCCTAAATGTCTGCTCATGCAAAATGAAAGCATGCTCGGAGACCTACAATGGCGACCACCACTGTCTGTaGCTACAATTTCCATGGTAT | + |
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Preference number: 4 (lower is better) Translates to: SLNVCSCKMKACSETYNGDHHCL*LQFPWY Trigger: ATACCATGGAAATTGTAGCCACAGACAGTGGTGGTC...GCCATTGTAGGTCTCCGAGCATGCTTTCATTTTGCATGAGCAGACATTTAGGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR TCA 90 bp | TCCCTAAATGTCTGCTCATGCAAAATGAAAGCATGCTCGGAGACCTACAATGGCAAGTCCGTTCTGAATTaGACACACCATCCTTCCATT | + |
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Preference number: 4 (lower is better) Translates to: SLNVCSCKMKACSETYNGKSVLN*THHPSI Trigger: AATGGAAGGATGGTGTGTTCAATTCAGAACGGACTT...GCCATTGTAGGTCTCCGAGCATGCTTTCATTTTGCATGAGCAGACATTTAGGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR CCA 90 bp | TCCCTAAATGTCTGCTCATGCAAAATGAAAGCATGCTCGGAGACCTACAATGGCTGTGTCAGGGAACTCTaGGAAATGGTCGTTTATATC | + |
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Preference number: 4 (lower is better) Translates to: SLNVCSCKMKACSETYNGCVREL*EMVVYI Trigger: GATATAAACGACCATTTCCCAGAGTTCCCTGACACA...GCCATTGTAGGTCTCCGAGCATGCTTTCATTTTGCATGAGCAGACATTTAGGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR CCA 90 bp | GACTGTATCTTACGTTCACACTTGATCAAAGCTGCTTTACCATTATATGTAGTATGGTTGTCCCAGACTTaGGTGGAGCTCCGCCATCCA | + |
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Preference number: 4 (lower is better) Translates to: DCILRSHLIKAALPLYVVWLSQT*VELRHP Trigger: TGGATGGCGGAGCTCCACCCAAGTCTGGGACAACCA...TACTACATATAATGGTAAAGCAGCTTTGATCAAGTGTGAACGTAAGATACAGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR TCA 90 bp | TATTGCACTCTAACACAAGAAGCCCATGAAAGCAAAGAGGGGCTTTTAGGAGACAATGGAAGTCCGTTCTaGATTGAACACACCATCCTT | + |
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Preference number: 4 (lower is better) Translates to: YCTLTQEAHESKEGLLGDNGSPF*IEHTIL Trigger: AAGGATGGTGTGTTCAATTCAGAACGGACTTCCATT...GTCTCCTAAAAGCCCCTCTTTGCTTTCATGGGCTTCTTGTGTTAGAGTGCAATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR GCA 90 bp | GACTGTATCTTACGTTCACACTTGATCAAAGCTGCTTTACCATTATATGTAGTACCTCCCTGGCCTTCTTaGACAACTTCACCCCCACAA | + |
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Preference number: 4 (lower is better) Translates to: DCILRSHLIKAALPLYVVPPWPS*TTSPPQ Trigger: TTGTGGGGGTGAAGTTGTGCAAGAAGGCCAGGGAGG...TACTACATATAATGGTAAAGCAGCTTTGATCAAGTGTGAACGTAAGATACAGTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR TCA 90 bp | TATTGCACTCTAACACAAGAAGCCCATGAAAGCAAAGAGGGGCTTTTAGGAGACGGTCGTTTATATCTGTaGACTGCAAGTCTGTTTGAA | + |
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Preference number: 4 (lower is better) Translates to: YCTLTQEAHESKEGLLGDGRLYL*TASLFE Trigger: TTCAAACAGACTTGCAGTTCACAGATATAAACGACC...GTCTCCTAAAAGCCCCTCTTTGCTTTCATGGGCTTCTTGTGTTAGAGTGCAATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR GCA 90 bp | ATTAGGAGAATGTTATCATGGTGTGGTATGTACACTATCTCTGGAAATGTCACAAGTTCTGAACAGCGTTaGTCCCTATGTCAGGGTCCT | + |
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Preference number: 4 (lower is better) Translates to: IRRMLSWCGMYTISGNVTSSEQR*SLCQGP Trigger: AGGACCCTGACATAGGGAGCAACGCTGTTCAGAACT...TGTGACATTTCCAGAGATAGTGTACATACCACACCATGATAACATTCTCCTAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR TCA 90 bp | ATTAGGAGAATGTTATCATGGTGTGGTATGTACACTATCTCTGGAAATGTCACAAGACAAGAGGAAAAGTaGAGACACAGAAGCCAAGGC | + |
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Preference number: 4 (lower is better) Translates to: IRRMLSWCGMYTISGNVTRQEEK*RHRSQG Trigger: GCCTTGGCTTCTGTGTCTTCACTTTTCCTCTTGTCT...TGTGACATTTCCAGAGATAGTGTACATACCACACCATGATAACATTCTCCTAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR GCA 90 bp | ATTAGGAGAATGTTATCATGGTGTGGTATGTACACTATCTCTGGAAATGTCACACAAATTCCCTCTCTCTaGATCAAGCTGCAAGAGCTC | + |
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Preference number: 4 (lower is better) Translates to: IRRMLSWCGMYTISGNVTQIPSL*IKLQEL Trigger: GAGCTCTTGCAGCTTGATGCAGAGAGAGGGAATTTG...TGTGACATTTCCAGAGATAGTGTACATACCACACCATGATAACATTCTCCTAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR GCA 90 bp | ATCCAAACACATGCCTCCCTAAATGTCTGCTCATGCAAAATGAAAGCATGCTCGTGCTTCAAAATCCAATaGCCCTTTAAGTCGAATTTC | + |
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Preference number: 4 (lower is better) Translates to: IQTHASLNVCSCKMKACSCFKIQ*PFKSNF Trigger: GAAATTCGACTTAAAGGGGCATTGGATTTTGAAGCA...CGAGCATGCTTTCATTTTGCATGAGCAGACATTTAGGGAGGCATGTGTTTGGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR CCA 90 bp | TCCCTAAATGTCTGCTCATGCAAAATGAAAGCATGCTCGGAGACCTACAATGGCTGGCTACAATTTCCATaGTATAGTATGAAGTTGCTT | + |
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Preference number: 4 (lower is better) Translates to: SLNVCSCKMKACSETYNGWLQFP*YSMKLL Trigger: AAGCAACTTCATACTATACCATGGAAATTGTAGCCA...GCCATTGTAGGTCTCCGAGCATGCTTTCATTTTGCATGAGCAGACATTTAGGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR CCA 90 bp | ATTAGGAGAATGTTATCATGGTGTGGTATGTACACTATCTCTGGAAATGTCACATTTTCTAGTATGATCTaGAAGTGCAGCACACAGGGT | + |
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Preference number: 4 (lower is better) Translates to: IRRMLSWCGMYTISGNVTFSSMI*KCSTQG Trigger: ACCCTGTGTGCTGCACTTCCAGATCATACTAGAAAA...TGTGACATTTCCAGAGATAGTGTACATACCACACCATGATAACATTCTCCTAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR CCA 90 bp | ATTAGGAGAATGTTATCATGGTGTGGTATGTACACTATCTCTGGAAATGTCACAGGGAACTCTGGGAAATaGTCGTTTATATCTGTGAAC | + |
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Preference number: 4 (lower is better) Translates to: IRRMLSWCGMYTISGNVTGNSGK*SFISVN Trigger: GTTCACAGATATAAACGACCATTTCCCAGAGTTCCC...TGTGACATTTCCAGAGATAGTGTACATACCACACCATGATAACATTCTCCTAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR CCA 90 bp | ATTAGGAGAATGTTATCATGGTGTGGTATGTACACTATCTCTGGAAATGTCACAAGTGACTGTAAGAACTaGGGGGCATTATCATTGATG | + |
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Preference number: 4 (lower is better) Translates to: IRRMLSWCGMYTISGNVTSDCKN*GALSLM Trigger: CATCAATGATAATGCCCCCCAGTTCTTACAGTCACT...TGTGACATTTCCAGAGATAGTGTACATACCACACCATGATAACATTCTCCTAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR GCA 90 bp | ATTAGGAGAATGTTATCATGGTGTGGTATGTACACTATCTCTGGAAATGTCACAGCAAGGAAAATGACTTaGCTTTTCTCTGGCGTTTTT | + |
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Preference number: 4 (lower is better) Translates to: IRRMLSWCGMYTISGNVTARKMT*LFSGVF Trigger: AAAAACGCCAGAGAAAAGGCAAGTCATTTTCCTTGC...TGTGACATTTCCAGAGATAGTGTACATACCACACCATGATAACATTCTCCTAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR CCA 90 bp | GACTGTATCTTACGTTCACACTTGATCAAAGCTGCTTTACCATTATATGTAGTATTCACATCCAACACCTaGATAGCTACAGTGCATTTT | + |
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Preference number: 4 (lower is better) Translates to: DCILRSHLIKAALPLYVVFTSNT*IATVHF Trigger: AAAATGCACTGTAGCTATCCAGGTGTTGGATGTGAA...TACTACATATAATGGTAAAGCAGCTTTGATCAAGTGTGAACGTAAGATACAGTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR CAA 90 bp | TGCCTCCCTAAATGTCTGCTCATGCAAAATGAAAGCATGCTCGGAGACCTACAAGTGGTTGTCCCAGACTaGGGTGGAGCTCCGCCATCC | + |
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Preference number: 5 (lower is better) Translates to: CLPKCLLMQNESMLGDLQVVVPD*GGAPPS Trigger: GGATGGCGGAGCTCCACCCAAGTCTGGGACAACCAC...TTGTAGGTCTCCGAGCATGCTTTCATTTTGCATGAGCAGACATTTAGGGAGGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS TCA 90 bp | TTCCCTCTCTCTGCATCAAGCTGCAAGAGCTCTTTGTTACCATTGTaGTGGATTCGTGCCCCTCTAGTGGTCAGTTCCCCAACCCTGAGC | + |
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Preference number: 5 (lower is better) Translates to: FPLSASSCKSSLLPL*WIRAPLVVSSPTLS Trigger: GCTCAGGGTTGGGGAACTGACCACTAGAGGGGCACGAATCCATCACAATGGTAACAAAGAGCTCTTGCAGCTTGATGCAGAGAGAGGGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR CAA 90 bp | TCCCTAAATGTCTGCTCATGCAAAATGAAAGCATGCTCGGAGACCTACAATGGCTCTTCCTGTGTGGGGTaGAGCGCCACCTCTGGCAGA | + |
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Preference number: 5 (lower is better) Translates to: SLNVCSCKMKACSETYNGSSCVG*SATSGR Trigger: TCTGCCAGAGGTGGCGCTCAACCCCACACAGGAAGA...GCCATTGTAGGTCTCCGAGCATGCTTTCATTTTGCATGAGCAGACATTTAGGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR CAA 90 bp | TGCCTCCCTAAATGTCTGCTCATGCAAAATGAAAGCATGCTCGGAGACCTACAACCTGAGCCCCAGATCTaGTGCCAGGTTAGCCACCAA | + |
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Preference number: 5 (lower is better) Translates to: CLPKCLLMQNESMLGDLQPEPQI*CQVSHQ Trigger: TTGGTGGCTAACCTGGCACAAGATCTGGGGCTCAGG...TTGTAGGTCTCCGAGCATGCTTTCATTTTGCATGAGCAGACATTTAGGGAGGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR CAA 90 bp | TATTGCACTCTAACACAAGAAGCCCATGAAAGCAAAGAGGGGCTTTTAGGAGACGGCTCTCCATTGTCCTaGACCAGCAGCAGCAGCCTG | + |
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Preference number: 5 (lower is better) Translates to: YCTLTQEAHESKEGLLGDGSPLS*TSSSSL Trigger: CAGGCTGCTGCTGCTGGTCAAGGACAATGGAGAGCC...GTCTCCTAAAAGCCCCTCTTTGCTTTCATGGGCTTCTTGTGTTAGAGTGCAATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR CAA 90 bp | TATCATCCAAACACATGCCTCCCTAAATGTCTGCTCATGCAAAATGAAAGCATGCAATCCGAACAGTGGTaGTCCCAGACTTGGGTGGAG | + |
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Preference number: 5 (lower is better) Translates to: YHPNTCLPKCLLMQNESMQSEQW*SQTWVE Trigger: CTCCACCCAAGTCTGGGACAACCACTGTTCGGATTG...CATGCTTTCATTTTGCATGAGCAGACATTTAGGGAGGCATGTGTTTGGATGATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR CAA 90 bp | ATCCAAACACATGCCTCCCTAAATGTCTGCTCATGCAAAATGAAAGCATGCTCGCAAGGTGTAAGAGGTTaGAGTGAAGGCAGGAGCATT | + |
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Preference number: 5 (lower is better) Translates to: IQTHASLNVCSCKMKACSQGVRG*SEGRSI Trigger: AATGCTCCTGCCTTCACTCAAACCTCTTACACCTTG...CGAGCATGCTTTCATTTTGCATGAGCAGACATTTAGGGAGGCATGTGTTTGGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR CAA 90 bp | GACTGTATCTTACGTTCACACTTGATCAAAGCTGCTTTACCATTATATGTAGTAGCCTCCCTGGCCTTCTaGCACAACTTCACCCCCACA | + |
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Preference number: 5 (lower is better) Translates to: DCILRSHLIKAALPLYVVASLAF*HNFTPT Trigger: TGTGGGGGTGAAGTTGTGCAAGAAGGCCAGGGAGGC...TACTACATATAATGGTAAAGCAGCTTTGATCAAGTGTGAACGTAAGATACAGTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR CAA 90 bp | TATCATCCAAACACATGCCTCCCTAAATGTCTGCTCATGCAAAATGAAAGCATGAGCAAGGAAAATGACTaGCCTTTTCTCTGGCGTTTT | + |
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Preference number: 5 (lower is better) Translates to: YHPNTCLPKCLLMQNESMSKEND*PFLWRF Trigger: AAAACGCCAGAGAAAAGGCAAGTCATTTTCCTTGCT...CATGCTTTCATTTTGCATGAGCAGACATTTAGGGAGGCATGTGTTTGGATGATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS-3UTR CAA 90 bp | GACTGTATCTTACGTTCACACTTGATCAAAGCTGCTTTACCATTATATGTAGTAGAACTGCAAGTCTGTTaGAAAGAACTGCACAGGGTT | + |
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Preference number: 5 (lower is better) Translates to: DCILRSHLIKAALPLYVVELQVC*KELHRV Trigger: AACCCTGTGCAGTTCTTTCAAACAGACTTGCAGTTC...TACTACATATAATGGTAAAGCAGCTTTGATCAAGTGTGAACGTAAGATACAGTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS CAA 72 bp | CTGGGTGTGCCCAGGTCAGAGACCGTGATTGTGATGTaGTACTCAGCGTTGCTCTCTCTATCCAGGGGTCTC | + |
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Preference number: 6 (lower is better) Translates to: LGVPRSETVIVM*YSALLSLSRGL Trigger: GAGACCCCTGGATAGAGAGAGCAACGCTGAGTACAACATCACAATCACGGTCTCTGACCTGGGCACACCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051163.3 ENSMUST00000192867.2 |
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| CDS CAA 90 bp | CCCTCAGGAATAGAGCAGTCAGCCAGAGAAGCCTCCCTGGCCTTCTaGCACAACTTCACCCCCACAAACAGCAGCACAGACAAGAGGAAA | + |
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Preference number: 6 (lower is better) Translates to: PSGIEQSAREASLAF*HNFTPTNSSTDKRK Trigger: TTTCCTCTTGTCTGTGCTGCTGTTTGTGGGGGTGAAGTTGTGCAAGAAGGCCAGGGAGGCTTCTCTGGCTGACTGCTCTATTCCTGAGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS GCA 72 bp | CTGCAAGAGCTCTTTGTTACCATTGTGATGGATTCGTaGCCCTCTAGTGGTCAGTTCCCCAACCCTGAGCCC | + |
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Preference number: 6 (lower is better) Translates to: LQELFVTIVMDS*PSSGQFPNPEP Trigger: GGGCTCAGGGTTGGGGAACTGACCACTAGAGGGGCACGAATCCATCACAATGGTAACAAAGAGCTCTTGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS GCA 72 bp | GTGAAGGCAGGAGCATTATCGTTGATGTCGGACACTTaGACTGTTATGGTGTGCTGGGTTGTGAGCCTGGGT | + |
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Preference number: 6 (lower is better) Translates to: VKAGALSLMSDT*TVMVCWVVSLG Trigger: ACCCAGGCTCACAACCCAGCACACCATAACAGTGCAAGTGTCCGACATCAACGATAATGCTCCTGCCTTCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS TCA 72 bp | TCTGCATCAAGCTGCAAGAGCTCTTTGTTACCATTGTaGTGGATTCGTGCCCCTCTAGTGGTCAGTTCCCCA | + |
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Preference number: 6 (lower is better) Translates to: SASSCKSSLLPL*WIRAPLVVSSP Trigger: TGGGGAACTGACCACTAGAGGGGCACGAATCCATCACAATGGTAACAAAGAGCTCTTGCAGCTTGATGCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS CAA 72 bp | TTCATCTATTACAAATGGCTGAGGACCTCCCCCGCCTaGAAACAGAGAGTAGGCTACATTGCCATGTATCCC | + |
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Preference number: 6 (lower is better) Translates to: FIYYKWLRTSPA*KQRVGYIAMYP Trigger: GGGATACATGGCAATGTAGCCTACTCTCTGTTTCAAGGCGGGGGAGGTCCTCAGCCATTTGTAATAGATGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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| CDS GCA 72 bp | GCCACTCTCCGTTTCTTCTGGCATGGAATAGCTAATTaGCTCAGAACTAGCCTCCCACAAAAGCAACAATAT | + |
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Preference number: 6 (lower is better) Translates to: ATLRFFWHGIAN*LRTSLPQKQQY Trigger: ATATTGTTGCTTTTGTGGGAGGCTAGTTCTGAGGCAATTAGCTATTCCATGCCAGAAGAAACGGAGAGTGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051163.3 |
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