Pregenerated sensors for PCDHB7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045062Ensembl transcript IDs: ENSMUST00000053037.5
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACATCCAGAACATGCACAACCAATAAACAGAACCACTACCATGCATaGTGCTCACAAACAAAAAGGGCCACAACCTTTGTGTGCATTCAT | + |
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Preference number: 1 (lower is better) Translates to: TSRTCTTNKQNHYHA*CSQTKRATTFVCIH Trigger: ATGAATGCACACAAAGGTTGTGGCCCTTTTTGTTTGTGAGCATCATGCATGGTAGTGGTTCTGTTTATTGGTTGTGCATGTTCTGGATGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| 3UTR CCA 90 bp | GAAAAGAATTGTACAACACTTAGGAAATCACATCACTTAGCTCACTaGTTCTCGACCTCCCTCATGCTGACTGCTTTAAGACAGCTCATA | + |
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Preference number: 1 (lower is better) Translates to: EKNCTTLRKSHHLAH*FSTSLMLTALRQLI Trigger: TATGAGCTGTCTTAAAGCAGTCAGCATGAGGGAGGTCGAGAACCAGTGAGCTAAGTGATGTGATTTCCTAAGTGTTGTACAATTCTTTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| 3UTR-3UTR TCA 90 bp | AGGAAATCACATCACTTAGCTCACTGGTTCTCGACCTCCCTCATGCTGACTGCTGGTAACTCCCTACCATaGAATTACTTTCGCTGCTAC | + |
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Preference number: 2 (lower is better) Translates to: RKSHHLAHWFSTSLMLTAGNSLP*NYFRCY Trigger: GTAGCAGCGAAAGTAATTTCATGGTAGGGAGTTACC...AGCAGTCAGCATGAGGGAGGTCGAGAACCAGTGAGCTAAGTGATGTGATTTCCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| 3UTR CAA 90 bp | ACCACTACCATGCATGATGCTCACAAACAAAAAGGGCCACAACCTTaGTGTGCATTCATGTACACCTTAAAGTTTATGACTTGGACAACC | + |
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Preference number: 2 (lower is better) Translates to: TTTMHDAHKQKGPQP*CAFMYTLKFMTWTT Trigger: GGTTGTCCAAGTCATAAACTTTAAGGTGTACATGAATGCACACAAAGGTTGTGGCCCTTTTTGTTTGTGAGCATCATGCATGGTAGTGGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| 3UTR CCA 72 bp | TGTACAACACTTAGGAAATCACATCACTTAGCTCACTaGTTCTCGACCTCCCTCATGCTGACTGCTTTAAGA | + |
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Preference number: 3 (lower is better) Translates to: CTTLRKSHHLAH*FSTSLMLTALR Trigger: TCTTAAAGCAGTCAGCATGAGGGAGGTCGAGAACCAGTGAGCTAAGTGATGTGATTTCCTAAGTGTTGTACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| 3UTR TCA 72 bp | ACATGCACAACCAATAAACAGAACCACTACCATGCATaGTGCTCACAAACAAAAAGGGCCACAACCTTTGTG | + |
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Preference number: 3 (lower is better) Translates to: TCTTNKQNHYHA*CSQTKRATTFV Trigger: CACAAAGGTTGTGGCCCTTTTTGTTTGTGAGCATCATGCATGGTAGTGGTTCTGTTTATTGGTTGTGCATGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| 3UTR CCA 72 bp | TTGTGTGCATTCATGTACACCTTAAAGTTTATGACTTaGACAACCAGGGCGCTTAAACTGGTAGTGAACATG | + |
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Preference number: 3 (lower is better) Translates to: LCAFMYTLKFMT*TTRALKLVVNM Trigger: CATGTTCACTACCAGTTTAAGCGCCCTGGTTGTCCAAGTCATAAACTTTAAGGTGTACATGAATGCACACAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR CCA 90 bp | GAAATCACATCACTTAGCTCACTGGTTCTCGACCTCCCTCATGCTGACTGCTTTCAGGCTCTGCCGCCCTaGGCAGCAGCTCTGTGCAGG | + |
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Preference number: 4 (lower is better) Translates to: EITSLSSLVLDLPHADCFQALPP*AAALCR Trigger: CCTGCACAGAGCTGCTGCCCAGGGCGGCAGAGCCTG...AAAGCAGTCAGCATGAGGGAGGTCGAGAACCAGTGAGCTAAGTGATGTGATTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR CCA 90 bp | GAAATCACATCACTTAGCTCACTGGTTCTCGACCTCCCTCATGCTGACTGCTTTTCTGTGGCACCCACGTaGAACTCGAAGGCCTGCAGG | + |
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Preference number: 4 (lower is better) Translates to: EITSLSSLVLDLPHADCFSVAPT*NSKACR Trigger: CCTGCAGGCCTTCGAGTTCCACGTGGGTGCCACAGA...AAAGCAGTCAGCATGAGGGAGGTCGAGAACCAGTGAGCTAAGTGATGTGATTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR TCA 90 bp | CACAAACAAAAAGGGCCACAACCTTTGTGTGCATTCATGTACACCTTAAAGTTTGCTGCTGAGCGCAGATaGGCCGCGGTCTGTGGCACC | + |
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Preference number: 4 (lower is better) Translates to: HKQKGPQPLCAFMYTLKFAAERR*AAVCGT Trigger: GGTGCCACAGACCGCGGCTCATCTGCGCTCAGCAGC...AAACTTTAAGGTGTACATGAATGCACACAAAGGTTGTGGCCCTTTTTGTTTGTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR TCA 90 bp | CACAAACAAAAAGGGCCACAACCTTTGTGTGCATTCATGTACACCTTAAAGTTTCCAGAGCCTGGCTGCTaGGCGCAGATGAGCCGCGGT | + |
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Preference number: 4 (lower is better) Translates to: HKQKGPQPLCAFMYTLKFPEPGC*AQMSRG Trigger: ACCGCGGCTCATCTGCGCTCAGCAGCCAGGCTCTGG...AAACTTTAAGGTGTACATGAATGCACACAAAGGTTGTGGCCCTTTTTGTTTGTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR GCA 90 bp | GAACATGCACAACCAATAAACAGAACCACTACCATGCATGATGCTCACAAACAAATCAGACACCACCCGTaGAGACCTGGCAGCCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: EHAQPINRTTTMHDAHKQIRHHP*RPGSQL Trigger: GAGCTGGCTGCCAGGTCTGCACGGGTGGTGTCTGAT...TTGTTTGTGAGCATCATGCATGGTAGTGGTTCTGTTTATTGGTTGTGCATGTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR GCA 90 bp | GAACATGCACAACCAATAAACAGAACCACTACCATGCATGATGCTCACAAACAACAGCTCTGTGCAGGGTaGAGAGGCGTTCTGCATCGG | + |
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Preference number: 4 (lower is better) Translates to: EHAQPINRTTTMHDAHKQQLCAG*RGVLHR Trigger: CCGATGCAGAACGCCTCTGCACCCTGCACAGAGCTG...TTGTTTGTGAGCATCATGCATGGTAGTGGTTCTGTTTATTGGTTGTGCATGTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR GCA 90 bp | AAAACTAACCATAGTACATCCAGAACATGCACAACCAATAAACAGAACCACTACCAGGTATCCAGGCTCTaGCGCCCTGGGCAGCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: KTNHSTSRTCTTNKQNHYQVSRL*RPGQQL Trigger: GAGCTGCTGCCCAGGGCGGCAGAGCCTGGATACCTG...GTAGTGGTTCTGTTTATTGGTTGTGCATGTTCTGGATGTACTATGGTTAGTTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR GCA 90 bp | AGGAAATCACATCACTTAGCTCACTGGTTCTCGACCTCCCTCATGCTGACTGCTGAGTTGTTGGCTCACTaGAAACCTGAACCAAAACCA | + |
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Preference number: 4 (lower is better) Translates to: RKSHHLAHWFSTSLMLTAELLAH*KPEPKP Trigger: TGGTTTTGGTTCAGGTTTGCAGTGAGCCAACAACTC...AGCAGTCAGCATGAGGGAGGTCGAGAACCAGTGAGCTAAGTGATGTGATTTCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR GCA 90 bp | CACAAACAAAAAGGGCCACAACCTTTGTGTGCATTCATGTACACCTTAAAGTTTTGGGCAGCAGCTCTGTaGAGGGTGCAGAGGCGTTCT | + |
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Preference number: 4 (lower is better) Translates to: HKQKGPQPLCAFMYTLKFWAAAL*RVQRRS Trigger: AGAACGCCTCTGCACCCTGCACAGAGCTGCTGCCCA...AAACTTTAAGGTGTACATGAATGCACACAAAGGTTGTGGCCCTTTTTGTTTGTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR TCA 90 bp | AACAGAACCACTACCATGCATGATGCTCACAAACAAAAAGGGCCACAACCTTTGCTGACTGTGTATTGTTaGAGCCCATTGCTGCCCACA | + |
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Preference number: 4 (lower is better) Translates to: NRTTTMHDAHKQKGPQPLLTVYC*SPLLPT Trigger: TGTGGGCAGCAATGGGCTTCAACAATACACAGTCAG...CAAAGGTTGTGGCCCTTTTTGTTTGTGAGCATCATGCATGGTAGTGGTTCTGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR TCA 90 bp | AAAACTAACCATAGTACATCCAGAACATGCACAACCAATAAACAGAACCACTACTGGTGTGCCATGTTGTaGGCCTGGGTGTGCCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: KTNHSTSRTCTTNKQNHYWCAML*AWVCPG Trigger: ACCTGGGCACACCCAGGCTCACAACATGGCACACCA...GTAGTGGTTCTGTTTATTGGTTGTGCATGTTCTGGATGTACTATGGTTAGTTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR GCA 90 bp | CCAAAACTAACCATAGTACATCCAGAACATGCACAACCAATAAACAGAACCACTAAGCTCAGCTCTGCCTaGTCCTCTCTGTCCAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: PKLTIVHPEHAQPINRTTKLSSA*SSLSRA Trigger: AGCCCTGGACAGAGAGGAGCAGGCAGAGCTGAGCTT...AGTGGTTCTGTTTATTGGTTGTGCATGTTCTGGATGTACTATGGTTAGTTTTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR TCA 90 bp | CTGTTTTGTGTGTATCATAAGAATCTGAGTTTTCTGAGGGTCTTAGGTGAGCGTTCTCCAGCTTCTCCATaGGGTCCCATTGAGTGCTTG | + |
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Preference number: 4 (lower is better) Translates to: LFCVYHKNLSFLRVLGERSPASP*GPIECL Trigger: CAAGCACTCAATGGGACCTCATGGAGAAGCTGGAGA...ACGCTCACCTAAGACCCTCAGAAAACTCAGATTCTTATGATACACACAAAACAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR CCA 90 bp | CACAAACAAAAAGGGCCACAACCTTTGTGTGCATTCATGTACACCTTAAAGTTTGAAGACAGTCAGGACTaGGGAGTCTGGGAGACTGCT | + |
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Preference number: 4 (lower is better) Translates to: HKQKGPQPLCAFMYTLKFEDSQD*GVWETA Trigger: AGCAGTCTCCCAGACTCCCCAGTCCTGACTGTCTTC...AAACTTTAAGGTGTACATGAATGCACACAAAGGTTGTGGCCCTTTTTGTTTGTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR TCA 90 bp | GAACATGCACAACCAATAAACAGAACCACTACCATGCATGATGCTCACAAACAAACTTGCCTTTTTGGGTaGGCTTTCTCCAGCTTCTCC | + |
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Preference number: 4 (lower is better) Translates to: EHAQPINRTTTMHDAHKQTCLFG*AFSSFS Trigger: GGAGAAGCTGGAGAAAGCTCACCCAAAAAGGCAAGT...TTGTTTGTGAGCATCATGCATGGTAGTGGTTCTGTTTATTGGTTGTGCATGTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR TCA 90 bp | AAATCCAAAACTAACCATAGTACATCCAGAACATGCACAACCAATAAACAGAACGCTCGCCATTATCCTTaGCCAGCATCAGCAGCCTGT | + |
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Preference number: 4 (lower is better) Translates to: KSKTNHSTSRTCTTNKQNARHYP*PASAAC Trigger: ACAGGCTGCTGATGCTGGTCAAGGATAATGGCGAGC...GTTCTGTTTATTGGTTGTGCATGTTCTGGATGTACTATGGTTAGTTTTGGATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR TCA 90 bp | TGCTGCTTTCTATTCATGCAGAAAGATTCAGGCAACGTAAGTAATTTTAAACACTCCACCAGCAGCACATaGAGAGTGACACTGGCAGAC | + |
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Preference number: 4 (lower is better) Translates to: CCFLFMQKDSGNVSNFKHSTSST*RVTLAD Trigger: GTCTGCCAGTGTCACTCTTCATGTGCTGCTGGTGGA...GTGTTTAAAATTACTTACGTTGCCTGAATCTTTCTGCATGAATAGAAAGCAGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR GCA 90 bp | AAACAAAAAGGGCCACAACCTTTGTGTGCATTCATGTACACCTTAAAGTTTATGAGCATCTGCATCCTGTaGGAAGACAGTCAGGACTGG | + |
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Preference number: 4 (lower is better) Translates to: KQKGPQPLCAFMYTLKFMSICIL*EDSQDW Trigger: CCAGTCCTGACTGTCTTCGCACAGGATGCAGATGCT...CATAAACTTTAAGGTGTACATGAATGCACACAAAGGTTGTGGCCCTTTTTGTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR CCA 90 bp | AAATCCAAAACTAACCATAGTACATCCAGAACATGCACAACCAATAAACAGAACGCCCTCCCCCATCCGTaGCCTCAATTTTCACATGGT | + |
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Preference number: 4 (lower is better) Translates to: KSKTNHSTSRTCTTNKQNALPHP*PQFSHG Trigger: ACCATGTGAAAATTGAGGCCACGGATGGGGGAGGGC...GTTCTGTTTATTGGTTGTGCATGTTCTGGATGTACTATGGTTAGTTTTGGATTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR TCA 90 bp | CCAAAACTAACCATAGTACATCCAGAACATGCACAACCAATAAACAGAACCACTAATGAGAGTTGGGGCTaGCTGTGTATTGTTGAAGCC | + |
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Preference number: 4 (lower is better) Translates to: PKLTIVHPEHAQPINRTTNESWG*LCIVEA Trigger: GGCTTCAACAATACACAGTCAGCCCCAACTCTCATT...AGTGGTTCTGTTTATTGGTTGTGCATGTTCTGGATGTACTATGGTTAGTTTTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR TCA 90 bp | AAACAAAAAGGGCCACAACCTTTGTGTGCATTCATGTACACCTTAAAGTTTATGTTTGAGCAGCTGGAATaGCAGCCAGGCATTTTGACC | + |
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Preference number: 4 (lower is better) Translates to: KQKGPQPLCAFMYTLKFMFEQLE*QPGILT Trigger: GGTCAAAATGCCTGGCTGTCATTCCAGCTGCTCAAA...CATAAACTTTAAGGTGTACATGAATGCACACAAAGGTTGTGGCCCTTTTTGTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR GCA 90 bp | AAATCCAAAACTAACCATAGTACATCCAGAACATGCACAACCAATAAACAGAACTCAGTGGTAACAGAGTaGCCGGCTGGCTGTTTTCTG | + |
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Preference number: 4 (lower is better) Translates to: KSKTNHSTSRTCTTNKQNSVVTE*PAGCFL Trigger: CAGAAAACAGCCAGCCGGGCACTCTGTTACCACTGA...GTTCTGTTTATTGGTTGTGCATGTTCTGGATGTACTATGGTTAGTTTTGGATTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR GCA 90 bp | CCAAAACTAACCATAGTACATCCAGAACATGCACAACCAATAAACAGAACCACTAAACTCTCCCAAAGTTaGCAGCATCTGCATCCTGTG | + |
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Preference number: 4 (lower is better) Translates to: PKLTIVHPEHAQPINRTTKLSQS*QHLHPV Trigger: CACAGGATGCAGATGCTGGCAACTTTGGGAGAGTTT...AGTGGTTCTGTTTATTGGTTGTGCATGTTCTGGATGTACTATGGTTAGTTTTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR CCA 90 bp | TGCTGCTTTCTATTCATGCAGAAAGATTCAGGCAACGTAAGTAATTTTAAACACCCAGAGAGGGTTCCCTaGCTCTCCTGCACAACTTTA | + |
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Preference number: 4 (lower is better) Translates to: CCFLFMQKDSGNVSNFKHPERVP*LSCTTL Trigger: TAAAGTTGTGCAGGAGAGCCAGGGAACCCTCTCTGG...GTGTTTAAAATTACTTACGTTGCCTGAATCTTTCTGCATGAATAGAAAGCAGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR CCA 90 bp | GAACATGCACAACCAATAAACAGAACCACTACCATGCATGATGCTCACAAACAACAATCCCAGAGTCCCTaGTCAGACACACTTCATATT | + |
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Preference number: 4 (lower is better) Translates to: EHAQPINRTTTMHDAHKQQSQSP*SDTLHI Trigger: AATATGAAGTGTGTCTGACCAGGGACTCTGGGATTG...TTGTTTGTGAGCATCATGCATGGTAGTGGTTCTGTTTATTGGTTGTGCATGTTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR GCA 90 bp | CACAAACAAAAAGGGCCACAACCTTTGTGTGCATTCATGTACACCTTAAAGTTTAGAACAAACCACCTTTaGATTCTCTCCGGAATCCCT | + |
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Preference number: 4 (lower is better) Translates to: HKQKGPQPLCAFMYTLKFRTNHL*ILSGIP Trigger: AGGGATTCCGGAGAGAATGCAAAGGTGGTTTGTTCT...AAACTTTAAGGTGTACATGAATGCACACAAAGGTTGTGGCCCTTTTTGTTTGTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR CCA 90 bp | AAACAAAAAGGGCCACAACCTTTGTGTGCATTCATGTACACCTTAAAGTTTATGCCCACATCCAAGTCCTaGGCTAAATTCAGTGGTAAC | + |
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Preference number: 4 (lower is better) Translates to: KQKGPQPLCAFMYTLKFMPTSKS*AKFSGN Trigger: GTTACCACTGAATTTAGCCCAGGACTTGGATGTGGG...CATAAACTTTAAGGTGTACATGAATGCACACAAAGGTTGTGGCCCTTTTTGTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR CCA 90 bp | GAACATGCACAACCAATAAACAGAACCACTACCATGCATGATGCTCACAAACAACCCTTCTGGAAATTCTaGAGCATGATCATTTATGTC | + |
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Preference number: 4 (lower is better) Translates to: EHAQPINRTTTMHDAHKQPFWKF*SMIIYV Trigger: GACATAAATGATCATGCTCCAGAATTTCCAGAAGGG...TTGTTTGTGAGCATCATGCATGGTAGTGGTTCTGTTTATTGGTTGTGCATGTTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR TCA 90 bp | CACAAACAAAAAGGGCCACAACCTTTGTGTGCATTCATGTACACCTTAAAGTTTTCTCTGGATTTCATCTaGTGCTTGAAAGAAGCCATA | + |
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Preference number: 4 (lower is better) Translates to: HKQKGPQPLCAFMYTLKFSLDFI*CLKEAI Trigger: TATGGCTTCTTTCAAGCATCAGATGAAATCCAGAGA...AAACTTTAAGGTGTACATGAATGCACACAAAGGTTGTGGCCCTTTTTGTTTGTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| 3UTR CAA 72 bp | ATGCATGATGCTCACAAACAAAAAGGGCCACAACCTTaGTGTGCATTCATGTACACCTTAAAGTTTATGACT | + |
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Preference number: 4 (lower is better) Translates to: MHDAHKQKGPQP*CAFMYTLKFMT Trigger: AGTCATAAACTTTAAGGTGTACATGAATGCACACAAAGGTTGTGGCCCTTTTTGTTTGTGAGCATCATGCAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR TCA 90 bp | AAACAAAAAGGGCCACAACCTTTGTGTGCATTCATGTACACCTTAAAGTTTATGCGCTATTATTTCGAGTaGGGACATGAAAATGAGAGT | + |
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Preference number: 4 (lower is better) Translates to: KQKGPQPLCAFMYTLKFMRYYFE*GHENES Trigger: ACTCTCATTTTCATGTCCTCACTCGAAATAATAGCG...CATAAACTTTAAGGTGTACATGAATGCACACAAAGGTTGTGGCCCTTTTTGTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR CCA 90 bp | AAAACTAACCATAGTACATCCAGAACATGCACAACCAATAAACAGAACCACTACGAATGGCAGATTCTCTaGAATAGAACAAACCACCTT | + |
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Preference number: 4 (lower is better) Translates to: KTNHSTSRTCTTNKQNHYEWQIL*NRTNHL Trigger: AAGGTGGTTTGTTCTATTCCAGAGAATCTGCCATTC...GTAGTGGTTCTGTTTATTGGTTGTGCATGTTCTGGATGTACTATGGTTAGTTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR TCA 90 bp | AAAACTAACCATAGTACATCCAGAACATGCACAACCAATAAACAGAACCACTACGTTGTATTTCTCCTGTaGCTTTGTTTATTGAGAACG | + |
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Preference number: 4 (lower is better) Translates to: KTNHSTSRTCTTNKQNHYVVFLL*LCLLRT Trigger: CGTTCTCAATAAACAAAGTCACAGGAGAAATACAAC...GTAGTGGTTCTGTTTATTGGTTGTGCATGTTCTGGATGTACTATGGTTAGTTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS GCA 90 bp | CTGCATCCTGTGCGAAGACAGTCAGGACTGGGGAGTCTGGGAGACTaGTCTCTAGGACCTGCACCTCATAGGGGCTGTTCACAAACTCAG | + |
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Preference number: 5 (lower is better) Translates to: LHPVRRQSGLGSLGD*SLGPAPHRGCSQTQ Trigger: CTGAGTTTGTGAACAGCCCCTATGAGGTGCAGGTCCTAGAGAGCAGTCTCCCAGACTCCCCAGTCCTGACTGTCTTCGCACAGGATGCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS CCA 90 bp | GAAAGAGTTCCTCAGGCACAGAGCAGCCACCCAGAGAGGGTTCCCTaGCTCTCCTGCACAACTTTATCCCCACGAAAAGCACCACAGACA | + |
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Preference number: 5 (lower is better) Translates to: ERVPQAQSSHPERVP*LSCTTLSPRKAPQT Trigger: TGTCTGTGGTGCTTTTCGTGGGGATAAAGTTGTGCAGGAGAGCCAGGGAACCCTCTCTGGGTGGCTGCTCTGTGCCTGAGGAACTCTTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR CAA 90 bp | AACAGAACCACTACCATGCATGATGCTCACAAACAAAAAGGGCCACAACCTTTGCCCAGACCCAGATCCTaGGCCAGGTGGGCTACAAAG | + |
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Preference number: 5 (lower is better) Translates to: NRTTTMHDAHKQKGPQPLPRPRS*ARWATK Trigger: CTTTGTAGCCCACCTGGCCAAGGATCTGGGTCTGGG...CAAAGGTTGTGGCCCTTTTTGTTTGTGAGCATCATGCATGGTAGTGGTTCTGTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR CAA 90 bp | GAAATCACATCACTTAGCTCACTGGTTCTCGACCTCCCTCATGCTGACTGCTTTGCGAACAGCTGCCCGTaGTCAGCATTAATGGAGATT | + |
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Preference number: 5 (lower is better) Translates to: EITSLSSLVLDLPHADCFANSCP*SALMEI Trigger: AATCTCCATTAATGCTGACAACGGGCAGCTGTTCGC...AAAGCAGTCAGCATGAGGGAGGTCGAGAACCAGTGAGCTAAGTGATGTGATTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR CAA 90 bp | CCAAAACTAACCATAGTACATCCAGAACATGCACAACCAATAAACAGAACCACTGGGGCTGACTGTGTATaGTTGAAGCCCATTGCTGCC | + |
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Preference number: 5 (lower is better) Translates to: PKLTIVHPEHAQPINRTTGADCV*LKPIAA Trigger: GGCAGCAATGGGCTTCAACAATACACAGTCAGCCCC...AGTGGTTCTGTTTATTGGTTGTGCATGTTCTGGATGTACTATGGTTAGTTTTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR CAA 90 bp | CACAAACAAAAAGGGCCACAACCTTTGTGTGCATTCATGTACACCTTAAAGTTTAAGGGCGCATTGTCATaGTCATCCAGCACCACCACG | + |
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Preference number: 5 (lower is better) Translates to: HKQKGPQPLCAFMYTLKFKGALS*SSSTTT Trigger: CGTGGTGGTGCTGGATGACAATGACAATGCGCCCTT...AAACTTTAAGGTGTACATGAATGCACACAAAGGTTGTGGCCCTTTTTGTTTGTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR CAA 90 bp | CCAAAACTAACCATAGTACATCCAGAACATGCACAACCAATAAACAGAACCACTGCTGACTGTGTATTGTaGAAGCCCATTGCTGCCCAC | + |
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Preference number: 5 (lower is better) Translates to: PKLTIVHPEHAQPINRTTADCVL*KPIAAH Trigger: GTGGGCAGCAATGGGCTTCAACAATACACAGTCAGC...AGTGGTTCTGTTTATTGGTTGTGCATGTTCTGGATGTACTATGGTTAGTTTTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR CAA 90 bp | CCAAAACTAACCATAGTACATCCAGAACATGCACAACCAATAAACAGAACCACTGAAACTCTCCCAAAGTaGCCAGCATCTGCATCCTGT | + |
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Preference number: 5 (lower is better) Translates to: PKLTIVHPEHAQPINRTTETLPK*PASASC Trigger: ACAGGATGCAGATGCTGGCAACTTTGGGAGAGTTTC...AGTGGTTCTGTTTATTGGTTGTGCATGTTCTGGATGTACTATGGTTAGTTTTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR CAA 90 bp | CTGTTTTGTGTGTATCATAAGAATCTGAGTTTTCTGAGGGTCTTAGGTGAGCGTATGGGTTTGAGGAATTaGAACTCACCAATCCCAGAG | + |
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Preference number: 5 (lower is better) Translates to: LFCVYHKNLSFLRVLGERMGLRN*NSPIPE Trigger: CTCTGGGATTGGTGAGTTCAAATTCCTCAAACCCAT...ACGCTCACCTAAGACCCTCAGAAAACTCAGATTCTTATGATACACACAAAACAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR CAA 90 bp | CACAAACAAAAAGGGCCACAACCTTTGTGTGCATTCATGTACACCTTAAAGTTTTCAGGAGCATTGTCATaGATGTCCATGATCAGGATT | + |
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Preference number: 5 (lower is better) Translates to: HKQKGPQPLCAFMYTLKFSGALS*MSMIRI Trigger: AATCCTGATCATGGACATCAATGACAATGCTCCTGA...AAACTTTAAGGTGTACATGAATGCACACAAAGGTTGTGGCCCTTTTTGTTTGTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR CAA 90 bp | CCAAAACTAACCATAGTACATCCAGAACATGCACAACCAATAAACAGAACCACTAATAAAAGCGATTACTaGCCTTTTTGGGTGAGCTTT | + |
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Preference number: 5 (lower is better) Translates to: PKLTIVHPEHAQPINRTTNKSDY*PFWVSF Trigger: AAAGCTCACCCAAAAAGGCAAGTAATCGCTTTTATT...AGTGGTTCTGTTTATTGGTTGTGCATGTTCTGGATGTACTATGGTTAGTTTTGG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR CAA 90 bp | AAAACTAACCATAGTACATCCAGAACATGCACAACCAATAAACAGAACCACTACATTTCTCCTGTGACTTaGTTTATTGAGAACGTTCTC | + |
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Preference number: 5 (lower is better) Translates to: KTNHSTSRTCTTNKQNHYISPVT*FIENVL Trigger: GAGAACGTTCTCAATAAACAAAGTCACAGGAGAAAT...GTAGTGGTTCTGTTTATTGGTTGTGCATGTTCTGGATGTACTATGGTTAGTTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS-3UTR CAA 90 bp | AAATCCAAAACTAACCATAGTACATCCAGAACATGCACAACCAATAAACAGAACTTCTCCTTGAAAATATaGCACTGGCTTTTCAAGAGT | + |
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Preference number: 5 (lower is better) Translates to: KSKTNHSTSRTCTTNKQNFSLKI*HWLFKS Trigger: ACTCTTGAAAAGCCAGTGCAATATTTTCAAGGAGAA...GTTCTGTTTATTGGTTGTGCATGTTCTGGATGTACTATGGTTAGTTTTGGATTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS GCA 72 bp | GTGCGAAGACAGTCAGGACTGGGGAGTCTGGGAGACTaGTCTCTAGGACCTGCACCTCATAGGGGCTGTTCA | + |
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Preference number: 6 (lower is better) Translates to: VRRQSGLGSLGD*SLGPAPHRGCS Trigger: TGAACAGCCCCTATGAGGTGCAGGTCCTAGAGAGCAGTCTCCCAGACTCCCCAGTCCTGACTGTCTTCGCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS CCA 72 bp | TGGGACAAGGTCCCTGTGCCACTGACATCCACCATGTaGCCAGGAAAGAGTTCCTCAGGCACAGAGCAGCCA | + |
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Preference number: 6 (lower is better) Translates to: WDKVPVPLTSTM*PGKSSSGTEQP Trigger: TGGCTGCTCTGTGCCTGAGGAACTCTTTCCTGGCCACATGGTGGATGTCAGTGGCACAGGGACCTTGTCCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS GCA 72 bp | GAAGCCATAGGAAACTCTCCCAAAGTTGCCAGCATCTaGATCCTGTGCGAAGACAGTCAGGACTGGGGAGTC | + |
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Preference number: 6 (lower is better) Translates to: EAIGNSPKVASI*ILCEDSQDWGV Trigger: GACTCCCCAGTCCTGACTGTCTTCGCACAGGATGCAGATGCTGGCAACTTTGGGAGAGTTTCCTATGGCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS TCA 72 bp | CATATTGATAGTTGTGGGACAAGGTCCCTGTGCCACTaGCATCCACCATGTGGCCAGGAAAGAGTTCCTCAG | + |
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Preference number: 6 (lower is better) Translates to: HIDSCGTRSLCH*HPPCGQERVPQ Trigger: CTGAGGAACTCTTTCCTGGCCACATGGTGGATGTCAGTGGCACAGGGACCTTGTCCCACAACTATCAATATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS GCA 72 bp | ATGCTTGAAAGAAGCCATAGGAAACTCTCCCAAAGTTaGCAGCATCTGCATCCTGTGCGAAGACAGTCAGGA | + |
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Preference number: 6 (lower is better) Translates to: MLERSHRKLSQS*QHLHPVRRQSG Trigger: TCCTGACTGTCTTCGCACAGGATGCAGATGCTGGCAACTTTGGGAGAGTTTCCTATGGCTTCTTTCAAGCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS GCA 72 bp | CATCCAAGTCCTGGGCTAAATTCAGTGGTAACAGAGTaGCCGGCTGGCTGTTTTCTGGTATATTCAATAGCA | + |
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Preference number: 6 (lower is better) Translates to: HPSPGLNSVVTE*PAGCFLVYSIA Trigger: TGCTATTGAATATACCAGAAAACAGCCAGCCGGGCACTCTGTTACCACTGAATTTAGCCCAGGACTTGGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS CAA 72 bp | TGGGTGAGCTTTCTCCAGCTTCTCCATGAGGTCCCATaGAGTGCTTGCAACCAATCCTTTAGAATTTCCAAA | + |
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Preference number: 6 (lower is better) Translates to: WVSFLQLLHEVP*SACNQSFRISK Trigger: TTTGGAAATTCTAAAGGATTGGTTGCAAGCACTCAATGGGACCTCATGGAGAAGCTGGAGAAAGCTCACCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS CAA 90 bp | GCTATCCCTGCAATGAAGATTTTCATTAAGTTCTCTCCCAGCGTCTaGAACCAACAGGTTGGGGATCATGGGTTTGAGGAATTTGAACTC | + |
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Preference number: 6 (lower is better) Translates to: AIPAMKIFIKFSPSV*NQQVGDHGFEEFEL Trigger: GAGTTCAAATTCCTCAAACCCATGATCCCCAACCTGTTGGTTCAAGACGCTGGGAGAGAACTTAATGAAAATCTTCATTGCAGGGATAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS CAA 72 bp | GCAATGAAGATTTTCATTAAGTTCTCTCCCAGCGTCTaGAACCAACAGGTTGGGGATCATGGGTTTGAGGAA | + |
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Preference number: 6 (lower is better) Translates to: AMKIFIKFSPSV*NQQVGDHGFEE Trigger: TTCCTCAAACCCATGATCCCCAACCTGTTGGTTCAAGACGCTGGGAGAGAACTTAATGAAAATCTTCATTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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| CDS CAA 90 bp | TTGCCTTTTTGGGTGAGCTTTCTCCAGCTTCTCCATGAGGTCCCATaGAGTGCTTGCAACCAATCCTTTAGAATTTCCAAAGCTTTGAAA | + |
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Preference number: 6 (lower is better) Translates to: LPFWVSFLQLLHEVP*SACNQSFRISKALK Trigger: TTTCAAAGCTTTGGAAATTCTAAAGGATTGGTTGCAAGCACTCAATGGGACCTCATGGAGAAGCTGGAGAAAGCTCACCCAAAAAGGCAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053037.5 |
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