Pregenerated sensors for PCDHB6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000051678Ensembl transcript IDs: ENSMUST00000061717.4
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCAGCTGTAGACAAAGCTGCTTTATCATTATATACAGTAGGCGTGTaGGGGAGGAAAACACACACATGCACAATGGAGTTCTTGATGCAC | + |
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Preference number: 1 (lower is better) Translates to: SAVDKAALSLYTVGV*GRKTHTCTMEFLMH Trigger: GTGCATCAAGAACTCCATTGTGCATGTGTGTGTTTTCCTCCCCCACACGCCTACTGTATATAATGATAAAGCAGCTTTGTCTACAGCTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| 3UTR GCA 90 bp | GATAGCTGTATCTTATGGTCACACTTCATCAGCTGTAGACAAAGCTaGTTTATCATTATATACAGTAGGCGTGTGGGGGAGGAAAACACA | + |
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Preference number: 1 (lower is better) Translates to: DSCILWSHFISCRQS*FIIIYSRRVGEENT Trigger: TGTGTTTTCCTCCCCCACACGCCTACTGTATATAATGATAAAGCAGCTTTGTCTACAGCTGATGAAGTGTGACCATAAGATACAGCTATC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| 3UTR TCA 90 bp | ACAGTCATAAATGCAAAGGAAGAAATGATTCCTAAGAACAGTAATTaGAATGGCCATCGAAACACAGCGAAGTTACTTATTTCCCTATCA | + |
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Preference number: 1 (lower is better) Translates to: TVINAKEEMIPKNSN*NGHRNTAKLLISLS Trigger: TGATAGGGAAATAAGTAACTTCGCTGTGTTTCGATGGCCATTTCAATTACTGTTCTTAGGAATCATTTCTTCCTTTGCATTTATGACTGT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| 3UTR-3UTR GCA 90 bp | GTGGGGGAGGAAAACACACACATGCACAATGGAGTTCTTGATGCACAGGCATCAACTCAGCAAGTTACATaGACAGCTTCAACAAGGTAC | + |
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Preference number: 2 (lower is better) Translates to: VGEENTHMHNGVLDAQASTQQVT*TASTRY Trigger: GTACCTTGTTGAAGCTGTGCATGTAACTTGCTGAGT...TGATGCCTGTGCATCAAGAACTCCATTGTGCATGTGTGTGTTTTCCTCCCCCAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| 3UTR-3UTR TCA 90 bp | GGCTCATACAAAATGAAAGCACACTACATCATGTACAATGACTTAAGTCACAAAGAAACTACAGATCATTaGGGCTCAATTATCGCACTG | + |
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Preference number: 2 (lower is better) Translates to: GSYKMKAHYIMYNDLSHKETTDH*GSIIAL Trigger: CAGTGCGATAATTGAGCCTCAATGATCTGTAGTTTC...TTTGTGACTTAAGTCATTGTACATGATGTAGTGTGCTTTCATTTTGTATGAGCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| 3UTR-3UTR TCA 90 bp | GGCTCATACAAAATGAAAGCACACTACATCATGTACAATGACTTAAGTCACAAAAGGCATCACGAAAAATaGAACGGGCATTTTCAGGAA | + |
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Preference number: 2 (lower is better) Translates to: GSYKMKAHYIMYNDLSHKRHHEK*NGHFQE Trigger: TTCCTGAAAATGCCCGTTTCATTTTTCGTGATGCCT...TTTGTGACTTAAGTCATTGTACATGATGTAGTGTGCTTTCATTTTGTATGAGCC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| 3UTR-3UTR TCA 90 bp | AACAAACAATACTCAGCAAGTTACATGCACAGCTTCAACAAGGTACAATTTGAACCTAAGAACAGTAATTaGAATGGCCATCGAAACACA | + |
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Preference number: 2 (lower is better) Translates to: NKQYSASYMHSFNKVQFEPKNSN*NGHRNT Trigger: TGTGTTTCGATGGCCATTTCAATTACTGTTCTTAGG...TTCAAATTGTACCTTGTTGAAGCTGTGCATGTAACTTGCTGAGTATTGTTTGTT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| 3UTR-3UTR CCA 90 bp | GGCTCATACAAAATGAAAGCACACTACATCATGTACAATGACTTAAGTCACAAATCAGTTACCAAAACCTaGGTGATCCTAACACTGAAA | + |
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Preference number: 2 (lower is better) Translates to: GSYKMKAHYIMYNDLSHKSVTKT*VILTLK Trigger: TTTCAGTGTTAGGATCACCCAGGTTTTGGTAACTGA...TTTGTGACTTAAGTCATTGTACATGATGTAGTGTGCTTTCATTTTGTATGAGCC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| 3UTR-3UTR CCA 90 bp | GGCTCATACAAAATGAAAGCACACTACATCATGTACAATGACTTAAGTCACAAAGATAGCTGTATCTTATaGTCACACTTCATCAGCTGT | + |
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Preference number: 2 (lower is better) Translates to: GSYKMKAHYIMYNDLSHKDSCIL*SHFISC Trigger: ACAGCTGATGAAGTGTGACCATAAGATACAGCTATC...TTTGTGACTTAAGTCATTGTACATGATGTAGTGTGCTTTCATTTTGTATGAGCC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| 3UTR TCA 72 bp | GAGGCTCAATTATCGCACTGTAACACAAGAAGCCCATaGAAGCAAAGAGGGGCTTTTAGGAGACTGATGGGG | + |
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Preference number: 3 (lower is better) Translates to: EAQLSHCNTRSP*KQRGAFRRLMG Trigger: CCCCATCAGTCTCCTAAAAGCCCCTCTTTGCTTTCATGGGCTTCTTGTGTTACAGTGCGATAATTGAGCCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| 3UTR TCA 72 bp | CATGGTGTGGTATGTGCATCTCTGAAAACGCCCCAGTaGACATTGTACTTAGCACAGTTAATGCACAGCAGT | + |
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Preference number: 3 (lower is better) Translates to: HGVVCASLKTPQ*TLYLAQLMHSS Trigger: ACTGCTGTGCATTAACTGTGCTAAGTACAATGTTCACTGGGGCGTTTTCAGAGATGCACATACCACACCATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| 3UTR CCA 72 bp | GACAAAGCTGCTTTATCATTATATACAGTAGGCGTGTaGGGGAGGAAAACACACACATGCACAATGGAGTTC | + |
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Preference number: 3 (lower is better) Translates to: DKAALSLYTVGV*GRKTHTCTMEF Trigger: GAACTCCATTGTGCATGTGTGTGTTTTCCTCCCCCACACGCCTACTGTATATAATGATAAAGCAGCTTTGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| 3UTR GCA 72 bp | ACCATGATTTACAATTCAACTTATCATCCGAACACATaGCTCACCAAATGTCGGCTCATACAAAATGAAAGC | + |
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Preference number: 3 (lower is better) Translates to: TMIYNSTYHPNT*LTKCRLIQNES Trigger: GCTTTCATTTTGTATGAGCCGACATTTGGTGAGGCATGTGTTCGGATGATAAGTTGAATTGTAAATCATGGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| 3UTR CCA 72 bp | AGCCAAGAAACTCATTCTTACTCAGTTACCAAAACCTaGGTGATCCTAACACTGAAATTTAGTTGGATTCCT | + |
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Preference number: 3 (lower is better) Translates to: SQETHSYSVTKT*VILTLKFSWIP Trigger: AGGAATCCAACTAAATTTCAGTGTTAGGATCACCCAGGTTTTGGTAACTGAGTAAGAATGAGTTTCTTGGCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| 3UTR CCA 72 bp | GCACACTACATCATGTACAATGACTTAAGTCACAAATaGCCATCTCTGGTATATTTTAGTAGCAATATAGGG | + |
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Preference number: 3 (lower is better) Translates to: AHYIMYNDLSHK*PSLVYFSSNIG Trigger: CCCTATATTGCTACTAAAATATACCAGAGATGGCCATTTGTGACTTAAGTCATTGTACATGATGTAGTGTGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| 3UTR TCA 72 bp | TCTGTTGAAAGTTTAATGTGCCCTCATTTACAACCATaGTTTACAATTCAACTTATCATCCGAACACATGCC | + |
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Preference number: 3 (lower is better) Translates to: SVESLMCPHLQP*FTIQLIIRTHA Trigger: GGCATGTGTTCGGATGATAAGTTGAATTGTAAATCATGGTTGTAAATGAGGGCACATTAAACTTTCAACAGA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| 3UTR TCA 72 bp | AATGCAAAGGAAGAAATGATTCCTAAGAACAGTAATTaGAATGGCCATCGAAACACAGCGAAGTTACTTATT | + |
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Preference number: 3 (lower is better) Translates to: NAKEEMIPKNSN*NGHRNTAKLLI Trigger: AATAAGTAACTTCGCTGTGTTTCGATGGCCATTTCAATTACTGTTCTTAGGAATCATTTCTTCCTTTGCATT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| 3UTR TCA 72 bp | CTCATACAAAATGAAAGCACACTACATCATGTACAATaGCTTAAGTCACAAATGGCCATCTCTGGTATATTT | + |
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Preference number: 3 (lower is better) Translates to: LIQNESTLHHVQ*LKSQMAISGIF Trigger: AAATATACCAGAGATGGCCATTTGTGACTTAAGTCATTGTACATGATGTAGTGTGCTTTCATTTTGTATGAG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS-3UTR TCA 90 bp | CTAAGAACAGTAATTGAAATGGCCATCGAAACACAGCGAAGTTACTTATTTCCCCCAGAGCCTGGCTGCTaGGCGCAGGTGAGCCTCCAT | + |
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Preference number: 4 (lower is better) Translates to: LRTVIEMAIETQRSYLFPPEPGC*AQVSLH Trigger: ATGGAGGCTCACCTGCGCTCAGCAGCCAGGCTCTGG...GGGAAATAAGTAACTTCGCTGTGTTTCGATGGCCATTTCAATTACTGTTCTTAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS-3UTR GCA 90 bp | GTGGGGGAGGAAAACACACACATGCACAATGGAGTTCTTGATGCACAGGCATCAGTCAGAGTCCTGAGCTaGCTTCAGAAGAAACACAGT | + |
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Preference number: 4 (lower is better) Translates to: VGEENTHMHNGVLDAQASVRVLS*LQKKHS Trigger: ACTGTGTTTCTTCTGAAGGCAGCTCAGGACTCTGAC...TGATGCCTGTGCATCAAGAACTCCATTGTGCATGTGTGTGTTTTCCTCCCCCAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS-3UTR CCA 90 bp | GTGGGGGAGGAAAACACACACATGCACAATGGAGTTCTTGATGCACAGGCATCACTCAGGAGCATTTTCTaGGATGGAACTAGTGAGCGA | + |
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Preference number: 4 (lower is better) Translates to: VGEENTHMHNGVLDAQASLRSIF*DGTSER Trigger: TCGCTCACTAGTTCCATCCCAGAAAATGCTCCTGAG...TGATGCCTGTGCATCAAGAACTCCATTGTGCATGTGTGTGTTTTCCTCCCCCAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS-3UTR TCA 90 bp | GGCTCATACAAAATGAAAGCACACTACATCATGTACAATGACTTAAGTCACAAACCAGAGAGGCCTCCCTaGCCCTCCTGCAAAGCCTCA | + |
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Preference number: 4 (lower is better) Translates to: GSYKMKAHYIMYNDLSHKPERPP*PSCKAS Trigger: TGAGGCTTTGCAGGAGGGTCAGGGAGGCCTCTCTGG...TTTGTGACTTAAGTCATTGTACATGATGTAGTGTGCTTTCATTTTGTATGAGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS-3UTR GCA 90 bp | AACAAACAATACTCAGCAAGTTACATGCACAGCTTCAACAAGGTACAATTTGAATGGGCAGCAGCTCAGTaGAGGGCGCAGAGGCGTTCT | + |
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Preference number: 4 (lower is better) Translates to: NKQYSASYMHSFNKVQFEWAAAQ*RAQRRS Trigger: AGAACGCCTCTGCGCCCTGCACTGAGCTGCTGCCCA...TTCAAATTGTACCTTGTTGAAGCTGTGCATGTAACTTGCTGAGTATTGTTTGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS-3UTR GCA 90 bp | CTAAGAACAGTAATTGAAATGGCCATCGAAACACAGCGAAGTTACTTATTTCCCTCCTGTGAAGAGTCGTaGTGCACCTCAGGCAGAGGC | + |
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Preference number: 4 (lower is better) Translates to: LRTVIEMAIETQRSYLFPSCEES*CTSGRG Trigger: GCCTCTGCCTGAGGTGCAGCACGACTCTTCACAGGA...GGGAAATAAGTAACTTCGCTGTGTTTCGATGGCCATTTCAATTACTGTTCTTAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS-3UTR TCA 90 bp | CTAAGAACAGTAATTGAAATGGCCATCGAAACACAGCGAAGTTACTTATTTCCCCTCTGGCAGAGACTGTaGCAACTAAGGCATCGAGGG | + |
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Preference number: 4 (lower is better) Translates to: LRTVIEMAIETQRSYLFPLWQRL*QLRHRG Trigger: CCCTCGATGCCTTAGTTGTCACAGTCTCTGCCAGAG...GGGAAATAAGTAACTTCGCTGTGTTTCGATGGCCATTTCAATTACTGTTCTTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS-3UTR TCA 90 bp | CTAAGAACAGTAATTGAAATGGCCATCGAAACACAGCGAAGTTACTTATTTCCCATGTCCCCATACCGCTaGCATCCACTAAGTGGCCAG | + |
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Preference number: 4 (lower is better) Translates to: LRTVIEMAIETQRSYLFPMSPYR*HPLSGQ Trigger: CTGGCCACTTAGTGGATGTCAGCGGTATGGGGACAT...GGGAAATAAGTAACTTCGCTGTGTTTCGATGGCCATTTCAATTACTGTTCTTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS-3UTR TCA 90 bp | GTGGGGGAGGAAAACACACACATGCACAATGGAGTTCTTGATGCACAGGCATCAAATGGTTCAGGAATTTaGAATCTGTTGTCCCAGAGT | + |
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Preference number: 4 (lower is better) Translates to: VGEENTHMHNGVLDAQASNGSGI*NLLSQS Trigger: ACTCTGGGACAACAGATTTCAAATTCCTGAACCATT...TGATGCCTGTGCATCAAGAACTCCATTGTGCATGTGTGTGTTTTCCTCCCCCAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS-3UTR CCA 90 bp | GTGGGGGAGGAAAACACACACATGCACAATGGAGTTCTTGATGCACAGGCATCAAAGAAACACAGTTGCTaGCTGTGTGCTTTCTTGAAT | + |
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Preference number: 4 (lower is better) Translates to: VGEENTHMHNGVLDAQASKKHSC*LCAFLN Trigger: ATTCAAGAAAGCACACAGCCAGCAACTGTGTTTCTT...TGATGCCTGTGCATCAAGAACTCCATTGTGCATGTGTGTGTTTTCCTCCCCCAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS-3UTR TCA 90 bp | GTGGGGGAGGAAAACACACACATGCACAATGGAGTTCTTGATGCACAGGCATCAAATGGAAGTTCGTTTTaGATAGAACACACCATCCTT | + |
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Preference number: 4 (lower is better) Translates to: VGEENTHMHNGVLDAQASNGSSF*IEHTIL Trigger: AAGGATGGTGTGTTCTATTCAAAACGAACTTCCATT...TGATGCCTGTGCATCAAGAACTCCATTGTGCATGTGTGTGTTTTCCTCCCCCAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS-3UTR GCA 90 bp | AACAAACAATACTCAGCAAGTTACATGCACAGCTTCAACAAGGTACAATTTGAATGTGAAGAGTCGTGCTaGACCTCAGGCAGAGGCAGG | + |
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Preference number: 4 (lower is better) Translates to: NKQYSASYMHSFNKVQFECEESC*TSGRGR Trigger: CCTGCCTCTGCCTGAGGTGCAGCACGACTCTTCACA...TTCAAATTGTACCTTGTTGAAGCTGTGCATGTAACTTGCTGAGTATTGTTTGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS-3UTR TCA 90 bp | CTAAGAACAGTAATTGAAATGGCCATCGAAACACAGCGAAGTTACTTATTTCCCCCAATGTCAGAGTCCTaGGCTGCCTTCAGAAGAAAC | + |
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Preference number: 4 (lower is better) Translates to: LRTVIEMAIETQRSYLFPPMSES*AAFRRN Trigger: GTTTCTTCTGAAGGCAGCTCAGGACTCTGACATTGG...GGGAAATAAGTAACTTCGCTGTGTTTCGATGGCCATTTCAATTACTGTTCTTAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS-3UTR TCA 90 bp | GGCTCATACAAAATGAAAGCACACTACATCATGTACAATGACTTAAGTCACAAAGTCCGTTGTCTGCATTaGTGGAGACCAGCGAGGCAA | + |
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Preference number: 4 (lower is better) Translates to: GSYKMKAHYIMYNDLSHKVRCLH*WRPARQ Trigger: TTGCCTCGCTGGTCTCCATCAATGCAGACAACGGAC...TTTGTGACTTAAGTCATTGTACATGATGTAGTGTGCTTTCATTTTGTATGAGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS-3UTR TCA 90 bp | AACAAACAATACTCAGCAAGTTACATGCACAGCTTCAACAAGGTACAATTTGAACATGTCTTCATCCTGTaGAGAGTCGTGCTGCACCTC | + |
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Preference number: 4 (lower is better) Translates to: NKQYSASYMHSFNKVQFEHVFIL*RVVLHL Trigger: GAGGTGCAGCACGACTCTTCACAGGATGAAGACATG...TTCAAATTGTACCTTGTTGAAGCTGTGCATGTAACTTGCTGAGTATTGTTTGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS-3UTR GCA 90 bp | GGCTCATACAAAATGAAAGCACACTACATCATGTACAATGACTTAAGTCACAAACGAGTCAGAGTCCACTaGCACCACTTTGGTTACCAG | + |
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Preference number: 4 (lower is better) Translates to: GSYKMKAHYIMYNDLSHKRVRVH*HHFGYQ Trigger: CTGGTAACCAAAGTGGTGGCAGTGGACTCTGACTCG...TTTGTGACTTAAGTCATTGTACATGATGTAGTGTGCTTTCATTTTGTATGAGCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS-3UTR CCA 90 bp | GGCTCATACAAAATGAAAGCACACTACATCATGTACAATGACTTAAGTCACAAAGGGAACTCCGGAGAGTaGTCGTTTATATCTGTGAGC | + |
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Preference number: 4 (lower is better) Translates to: GSYKMKAHYIMYNDLSHKGNSGE*SFISVS Trigger: GCTCACAGATATAAACGACCACTCTCCGGAGTTCCC...TTTGTGACTTAAGTCATTGTACATGATGTAGTGTGCTTTCATTTTGTATGAGCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS-3UTR TCA 90 bp | GGCTCATACAAAATGAAAGCACACTACATCATGTACAATGACTTAAGTCACAAATCTTTGTTTCCTCTGTaGTGGATTCGAGCCCTTCTA | + |
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Preference number: 4 (lower is better) Translates to: GSYKMKAHYIMYNDLSHKSLFPL*WIRALL Trigger: TAGAAGGGCTCGAATCCATCACAGAGGAAACAAAGA...TTTGTGACTTAAGTCATTGTACATGATGTAGTGTGCTTTCATTTTGTATGAGCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS-3UTR GCA 90 bp | AACAAACAATACTCAGCAAGTTACATGCACAGCTTCAACAAGGTACAATTTGAAGTCTCCACATCTAGCTaGAAGAGCTCTTTGTTTCCT | + |
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Preference number: 4 (lower is better) Translates to: NKQYSASYMHSFNKVQFEVSTSS*KSSLFP Trigger: AGGAAACAAAGAGCTCTTGCAGCTAGATGTGGAGAC...TTCAAATTGTACCTTGTTGAAGCTGTGCATGTAACTTGCTGAGTATTGTTTGTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS-3UTR GCA 90 bp | AACAAACAATACTCAGCAAGTTACATGCACAGCTTCAACAAGGTACAATTTGAACAGAAGAAACACAGTTaGTGGCTGTGTGCTTTCTTG | + |
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Preference number: 4 (lower is better) Translates to: NKQYSASYMHSFNKVQFEQKKHS*WLCAFL Trigger: CAAGAAAGCACACAGCCAGCAACTGTGTTTCTTCTG...TTCAAATTGTACCTTGTTGAAGCTGTGCATGTAACTTGCTGAGTATTGTTTGTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS-3UTR GCA 90 bp | AACAAACAATACTCAGCAAGTTACATGCACAGCTTCAACAAGGTACAATTTGAAAGTTCTGAACAGCGTTaGTTCCAATGTCAGAGTCCT | + |
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Preference number: 4 (lower is better) Translates to: NKQYSASYMHSFNKVQFESSEQR*FQCQSP Trigger: AGGACTCTGACATTGGAAGCAACGCTGTTCAGAACT...TTCAAATTGTACCTTGTTGAAGCTGTGCATGTAACTTGCTGAGTATTGTTTGTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS-3UTR GCA 90 bp | CTAAGAACAGTAATTGAAATGGCCATCGAAACACAGCGAAGTTACTTATTTCCCTGCTTCAAAATCCAGTaGCCCTTTAAGACGAATTTC | + |
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Preference number: 4 (lower is better) Translates to: LRTVIEMAIETQRSYLFPCFKIQ*PFKTNF Trigger: GAAATTCGTCTTAAAGGGGCACTGGATTTTGAAGCA...GGGAAATAAGTAACTTCGCTGTGTTTCGATGGCCATTTCAATTACTGTTCTTAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS-3UTR TCA 90 bp | GGCTCATACAAAATGAAAGCACACTACATCATGTACAATGACTTAAGTCACAAAGGTCGTTTATATCTGTaGGCTGCAGTTCAGTTTGAA | + |
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Preference number: 4 (lower is better) Translates to: GSYKMKAHYIMYNDLSHKGRLYL*AAVQFE Trigger: TTCAAACTGAACTGCAGCTCACAGATATAAACGACC...TTTGTGACTTAAGTCATTGTACATGATGTAGTGTGCTTTCATTTTGTATGAGCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS-3UTR GCA 90 bp | AACAAACAATACTCAGCAAGTTACATGCACAGCTTCAACAAGGTACAATTTGAAGCAAGAAAAACCACTTaGCTTTTCTCTGGCGTTTTT | + |
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Preference number: 4 (lower is better) Translates to: NKQYSASYMHSFNKVQFEARKTT*LFSGVF Trigger: AAAAACGCCAGAGAAAAGGCAAGTGGTTTTTCTTGC...TTCAAATTGTACCTTGTTGAAGCTGTGCATGTAACTTGCTGAGTATTGTTTGTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS-3UTR GCA 90 bp | GGCTCATACAAAATGAAAGCACACTACATCATGTACAATGACTTAAGTCACAAACAGTTGCTGGCTGTGTaGTTTCTTGAATTTTTAGGA | + |
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Preference number: 4 (lower is better) Translates to: GSYKMKAHYIMYNDLSHKQLLAV*FLEFLG Trigger: TCCTAAAAATTCAAGAAAGCACACAGCCAGCAACTG...TTTGTGACTTAAGTCATTGTACATGATGTAGTGTGCTTTCATTTTGTATGAGCC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS-3UTR TCA 90 bp | AACAAACAATACTCAGCAAGTTACATGCACAGCTTCAACAAGGTACAATTTGAATTCCATGGTATAGTATaGAGTTGCTTCAAAATCCAG | + |
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Preference number: 4 (lower is better) Translates to: NKQYSASYMHSFNKVQFEFHGIV*SCFKIQ Trigger: CTGGATTTTGAAGCAACTTCATACTATACCATGGAA...TTCAAATTGTACCTTGTTGAAGCTGTGCATGTAACTTGCTGAGTATTGTTTGTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS-3UTR CAA 90 bp | CTAAGAACAGTAATTGAAATGGCCATCGAAACACAGCGAAGTTACTTATTTCCCGTGGTAGTCCCAGACTaGGGCGGAGCTCCCCCATCC | + |
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Preference number: 5 (lower is better) Translates to: LRTVIEMAIETQRSYLFPVVVPD*GGAPPS Trigger: GGATGGGGGAGCTCCGCCCAAGTCTGGGACTACCAC...GGGAAATAAGTAACTTCGCTGTGTTTCGATGGCCATTTCAATTACTGTTCTTAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS-3UTR CAA 90 bp | GTGGGGGAGGAAAACACACACATGCACAATGGAGTTCTTGATGCACAGGCATCAAGAATGAAGGGCGCATaGTCATTGTCATCCAGCACC | + |
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Preference number: 5 (lower is better) Translates to: VGEENTHMHNGVLDAQASRMKGA*SLSSST Trigger: GGTGCTGGATGACAATGACAATGCGCCCTTCATTCT...TGATGCCTGTGCATCAAGAACTCCATTGTGCATGTGTGTGTTTTCCTCCCCCAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS-3UTR CAA 90 bp | GTGGGGGAGGAAAACACACACATGCACAATGGAGTTCTTGATGCACAGGCATCAGAGCTGCAGTTCAGTTaGAAAGAACTGCACAGGGTT | + |
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Preference number: 5 (lower is better) Translates to: VGEENTHMHNGVLDAQASELQFS*KELHRV Trigger: AACCCTGTGCAGTTCTTTCAAACTGAACTGCAGCTC...TGATGCCTGTGCATCAAGAACTCCATTGTGCATGTGTGTGTTTTCCTCCCCCAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS-3UTR CAA 90 bp | GTGGGGGAGGAAAACACACACATGCACAATGGAGTTCTTGATGCACAGGCATCATGGTATAGTATGAAGTaGCTTCAAAATCCAGTGCCC | + |
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Preference number: 5 (lower is better) Translates to: VGEENTHMHNGVLDAQASWYSMK*LQNPVP Trigger: GGGCACTGGATTTTGAAGCAACTTCATACTATACCA...TGATGCCTGTGCATCAAGAACTCCATTGTGCATGTGTGTGTTTTCCTCCCCCAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS-3UTR CAA 90 bp | GGCTCATACAAAATGAAAGCACACTACATCATGTACAATGACTTAAGTCACAAACCAGGTTCCGTGGCCTaGAGCAACTGGAATGACAGC | + |
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Preference number: 5 (lower is better) Translates to: GSYKMKAHYIMYNDLSHKPGSVA*SNWNDS Trigger: GCTGTCATTCCAGTTGCTCAAGGCCACGGAACCTGG...TTTGTGACTTAAGTCATTGTACATGATGTAGTGTGCTTTCATTTTGTATGAGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS-3UTR CAA 90 bp | AACAAACAATACTCAGCAAGTTACATGCACAGCTTCAACAAGGTACAATTTGAAAGGACCTCCCCCACCTaGAAACAGAGAGTAGGCTAC | + |
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Preference number: 5 (lower is better) Translates to: NKQYSASYMHSFNKVQFERTSPT*KQRVGY Trigger: GTAGCCTACTCTCTGTTTCAAGGTGGGGGAGGTCCT...TTCAAATTGTACCTTGTTGAAGCTGTGCATGTAACTTGCTGAGTATTGTTTGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS GCA 90 bp | CACCAAGTAGCCACTCTCTGTTTCTTCTGGAATGGAATATCTAATTaGCTCAGAACCAGCCTCCCACAAAAGCAACAATATAGCAAGAAA | + |
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Preference number: 5 (lower is better) Translates to: HQVATLCFFWNGISN*LRTSLPQKQQYSKK Trigger: TTTCTTGCTATATTGTTGCTTTTGTGGGAGGCTGGTTCTGAGGCAATTAGATATTCCATTCCAGAAGAAACAGAGAGTGGCTACTTGGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS-3UTR CAA 90 bp | AACAAACAATACTCAGCAAGTTACATGCACAGCTTCAACAAGGTACAATTTGAAGTGAGTTTAGGGGCATaGTCGTTCACATCCAACACC | + |
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Preference number: 5 (lower is better) Translates to: NKQYSASYMHSFNKVQFEVSLGA*SFTSNT Trigger: GGTGTTGGATGTGAACGACAATGCCCCTAAACTCAC...TTCAAATTGTACCTTGTTGAAGCTGTGCATGTAACTTGCTGAGTATTGTTTGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS-3UTR CAA 90 bp | AACAAACAATACTCAGCAAGTTACATGCACAGCTTCAACAAGGTACAATTTGAATCAGAAGAAACACAGTaGCTGGCTGTGTGCTTTCTT | + |
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Preference number: 5 (lower is better) Translates to: NKQYSASYMHSFNKVQFESEETQ*LAVCFL Trigger: AAGAAAGCACACAGCCAGCAACTGTGTTTCTTCTGA...TTCAAATTGTACCTTGTTGAAGCTGTGCATGTAACTTGCTGAGTATTGTTTGTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS-3UTR CAA 90 bp | AACAAACAATACTCAGCAAGTTACATGCACAGCTTCAACAAGGTACAATTTGAATCGGGGGCATTATCATaGATGTCCACGACTTCAATT | + |
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Preference number: 5 (lower is better) Translates to: NKQYSASYMHSFNKVQFESGALS*MSTTSI Trigger: AATTGAAGTCGTGGACATCAATGATAATGCCCCCGA...TTCAAATTGTACCTTGTTGAAGCTGTGCATGTAACTTGCTGAGTATTGTTTGTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS-3UTR CAA 90 bp | GGCTCATACAAAATGAAAGCACACTACATCATGTACAATGACTTAAGTCACAAAAGCAAGAAAAACCACTaGCCTTTTCTCTGGCGTTTT | + |
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Preference number: 5 (lower is better) Translates to: GSYKMKAHYIMYNDLSHKSKKNH*PFLWRF Trigger: AAAACGCCAGAGAAAAGGCAAGTGGTTTTTCTTGCT...TTTGTGACTTAAGTCATTGTACATGATGTAGTGTGCTTTCATTTTGTATGAGCC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS GCA 72 bp | CTGAACAGCGTTGCTTCCAATGTCAGAGTCCTGAGCTaGCTTCAGAAGAAACACAGTTGCTGGCTGTGTGCT | + |
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Preference number: 6 (lower is better) Translates to: LNSVASNVRVLS*LQKKHSCWLCA Trigger: AGCACACAGCCAGCAACTGTGTTTCTTCTGAAGGCAGCTCAGGACTCTGACATTGGAAGCAACGCTGTTCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS TCA 72 bp | TCCTTCCATTATCCCCCGAATCTGGGTCAGAGACACTaGAAACAGCAACTACAGCCTCAGGAGCATTTTCTG | + |
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Preference number: 6 (lower is better) Translates to: SFHYPPNLGQRH*KQQLQPQEHFL Trigger: CAGAAAATGCTCCTGAGGCTGTAGTTGCTGTTTTCAGTGTCTCTGACCCAGATTCGGGGGATAATGGAAGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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| CDS CAA 72 bp | TTCATCTATTACAAATGGCTGAGGACCTCCCCCACCTaGAAACAGAGAGTAGGCTACATTGCCATGTATCCC | + |
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Preference number: 6 (lower is better) Translates to: FIYYKWLRTSPT*KQRVGYIAMYP Trigger: GGGATACATGGCAATGTAGCCTACTCTCTGTTTCAAGGTGGGGGAGGTCCTCAGCCATTTGTAATAGATGAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061717.4 |
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