Pregenerated sensors for PCDHB5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000063687Ensembl transcript IDs: ENSMUST00000078271.4
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCAACCCACCCACTCCCACTTTCTGGCCACGGCATTCCCCTACACTaGGACATCGAGCCTTCACAGGACCAAGGGCCTCTCCTCCCATTG | + |
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Preference number: 1 (lower is better) Translates to: PTHPLPLSGHGIPLH*DIEPSQDQGPLLPL Trigger: CAATGGGAGGAGAGGCCCTTGGTCCTGTGAAGGCTCGATGTCCCAGTGTAGGGGAATGCCGTGGCCAGAAAGTGGGAGTGGGTGGGTTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| 3UTR CCA 90 bp | CATATGCGGCTGGGGCCATGTGTCCCACCATGTGTACTCTTTGGTTaGTGGTTTAGTCCCTGGGAGCTCTGCCGGTACTCGTTGGTTCAC | + |
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Preference number: 1 (lower is better) Translates to: HMRLGPCVPPCVLFG*WFSPWELCRYSLVH Trigger: GTGAACCAACGAGTACCGGCAGAGCTCCCAGGGACTAAACCACCAACCAAAGAGTACACATGGTGGGACACATGGCCCCAGCCGCATATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| 3UTR CCA 90 bp | ATGCGGCTGGGGCCATGTGTCCCACCATGTGTACTCTTTGGTTGGTaGTTTAGTCCCTGGGAGCTCTGCCGGTACTCGTTGGTTCACATT | + |
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Preference number: 1 (lower is better) Translates to: MRLGPCVPPCVLFGW*FSPWELCRYSLVHI Trigger: AATGTGAACCAACGAGTACCGGCAGAGCTCCCAGGGACTAAACCACCAACCAAAGAGTACACATGGTGGGACACATGGCCCCAGCCGCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| 3UTR CCA 90 bp | CCATGTGTCCCACCATGTGTACTCTTTGGTTGGTGGTTTAGTCCCTaGGAGCTCTGCCGGTACTCGTTGGTTCACATTGTTGTTCCTATG | + |
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Preference number: 1 (lower is better) Translates to: PCVPPCVLFGWWFSP*ELCRYSLVHIVVPM Trigger: CATAGGAACAACAATGTGAACCAACGAGTACCGGCAGAGCTCCCAGGGACTAAACCACCAACCAAAGAGTACACATGGTGGGACACATGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| 3UTR CAA 90 bp | GGTTACATATGCGGCTGGGGCCATGTGTCCCACCATGTGTACTCTTaGGTTGGTGGTTTAGTCCCTGGGAGCTCTGCCGGTACTCGTTGG | + |
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Preference number: 2 (lower is better) Translates to: GYICGWGHVSHHVYS*VGGLVPGSSAGTRW Trigger: CCAACGAGTACCGGCAGAGCTCCCAGGGACTAAACCACCAACCAAAGAGTACACATGGTGGGACACATGGCCCCAGCCGCATATGTAACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| 3UTR CAA 90 bp | GCTACTAGCATGCATGATGCTCACAAACAAAAACTGTCACAACCTTaGTGTAAATTGATATACACTTTAAATGTTAAGGCTTGGCTATCC | + |
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Preference number: 2 (lower is better) Translates to: ATSMHDAHKQKLSQP*CKLIYTLNVKAWLS Trigger: GGATAGCCAAGCCTTAACATTTAAAGTGTATATCAATTTACACAAAGGTTGTGACAGTTTTTGTTTGTGAGCATCATGCATGCTAGTAGC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| 3UTR CCA 72 bp | TCTCCCCCTCTCACCAACCCACCCACTCCCACTTTCTaGCCACGGCATTCCCCTACACTGGGACATCGAGCC | + |
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Preference number: 3 (lower is better) Translates to: SPPLTNPPTPTF*PRHSPTLGHRA Trigger: GGCTCGATGTCCCAGTGTAGGGGAATGCCGTGGCCAGAAAGTGGGAGTGGGTGGGTTGGTGAGAGGGGGAGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| 3UTR CCA 72 bp | CTGGGGCCATGTGTCCCACCATGTGTACTCTTTGGTTaGTGGTTTAGTCCCTGGGAGCTCTGCCGGTACTCG | + |
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Preference number: 3 (lower is better) Translates to: LGPCVPPCVLFG*WFSPWELCRYS Trigger: CGAGTACCGGCAGAGCTCCCAGGGACTAAACCACCAACCAAAGAGTACACATGGTGGGACACATGGCCCCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| 3UTR CCA 72 bp | GGGCCATGTGTCCCACCATGTGTACTCTTTGGTTGGTaGTTTAGTCCCTGGGAGCTCTGCCGGTACTCGTTG | + |
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Preference number: 3 (lower is better) Translates to: GPCVPPCVLFGW*FSPWELCRYSL Trigger: CAACGAGTACCGGCAGAGCTCCCAGGGACTAAACCACCAACCAAAGAGTACACATGGTGGGACACATGGCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| 3UTR-3UTR CAA 90 bp | CTCTCACCAACCCACCCACTCCCACTTTCTGGCCACGGCATTCCCCTACACTGGCACCATGTGTACTCTTaGGTTGGTGGTTTAGTCCCT | + |
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Preference number: 3 (lower is better) Translates to: LSPTHPLPLSGHGIPLHWHHVYS*VGGLVP Trigger: AGGGACTAAACCACCAACCAAAGAGTACACATGGTG...CCAGTGTAGGGGAATGCCGTGGCCAGAAAGTGGGAGTGGGTGGGTTGGTGAGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| 3UTR CCA 72 bp | TTGTGTAAATTGATATACACTTTAAATGTTAAGGCTTaGCTATCCAGGGGGCTTAAACTGGCAATGAATACG | + |
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Preference number: 3 (lower is better) Translates to: LCKLIYTLNVKA*LSRGLKLAMNT Trigger: CGTATTCATTGCCAGTTTAAGCCCCCTGGATAGCCAAGCCTTAACATTTAAAGTGTATATCAATTTACACAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR CCA 90 bp | CCTCTCACCAACCCACCCACTCCCACTTTCTGGCCACGGCATTCCCCTACACTGCCACCCGTGCAGACCTaGCAGCCAGCTCCCCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: PLTNPPTPTFWPRHSPTLPPVQT*QPAPQL Trigger: GAGCTGGGGAGCTGGCTGCCAGGTCTGCACGGGTGG...CAGTGTAGGGGAATGCCGTGGCCAGAAAGTGGGAGTGGGTGGGTTGGTGAGAGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR GCA 90 bp | CTCCCCCTCTCACCAACCCACCCACTCCCACTTTCTGGCCACGGCATTCCCCTAGTCAGACACCACCCGTaGAGACCTGGCAGCCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: LPLSPTHPLPLSGHGIPLVRHHP*RPGSQL Trigger: GAGCTGGCTGCCAGGTCTGCACGGGTGGTGTCTGAC...TAGGGGAATGCCGTGGCCAGAAAGTGGGAGTGGGTGGGTTGGTGAGAGGGGGAG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR CCA 90 bp | CATCGAGCCTTCACAGGACCAAGGGCCTCTCCTCCCATTGATGAGCGACTAGGCCAGGCTCCGCAGCCCTaGGCAGCACCTCAGTGCAGG | + |
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Preference number: 4 (lower is better) Translates to: HRAFTGPRASPPIDERLGQAPQP*AAPQCR Trigger: CCTGCACTGAGGTGCTGCCCAGGGCTGCGGAGCCTG...GCCTAGTCGCTCATCAATGGGAGGAGAGGCCCTTGGTCCTGTGAAGGCTCGATG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR GCA 90 bp | CTCTCACCAACCCACCCACTCCCACTTTCTGGCCACGGCATTCCCCTACACTGGGTTCCCTGGCCCTCCTaGACAGCCTCACTCCCACGA | + |
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Preference number: 4 (lower is better) Translates to: LSPTHPLPLSGHGIPLHWVPWPS*TASLPR Trigger: TCGTGGGAGTGAGGCTGTGCAGGAGGGCCAGGGAAC...CCAGTGTAGGGGAATGCCGTGGCCAGAAAGTGGGAGTGGGTGGGTTGGTGAGAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR CCA 90 bp | CTGGGACATCGAGCCTTCACAGGACCAAGGGCCTCTCCTCCCATTGATGAGCGATGGAGGGCCAGCTGTTaGTCGTGGGGTGGCAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: LGHRAFTGPRASPPIDERWRASC*SWGGSS Trigger: GCTGCTGCCACCCCACGACCAACAGCTGGCCCTCCA...TCGCTCATCAATGGGAGGAGAGGCCCTTGGTCCTGTGAAGGCTCGATGTCCCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR TCA 90 bp | TCCCCCTCTCACCAACCCACCCACTCCCACTTTCTGGCCACGGCATTCCCCTACGCAGCAGCGAGTAGGTaGTGTGAGCATTGGAGCCTG | + |
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Preference number: 4 (lower is better) Translates to: SPSHQPTHSHFLATAFPYAAASR*CEHWSL Trigger: CAGGCTCCAATGCTCACATCACCTACTCGCTGCTGC...GTAGGGGAATGCCGTGGCCAGAAAGTGGGAGTGGGTGGGTTGGTGAGAGGGGGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR CCA 90 bp | CTCCCCCTCTCACCAACCCACCCACTCCCACTTTCTGGCCACGGCATTCCCCTAGAAGACAGTCAGGACTaGGGAGTCTGGGGGACTGCT | + |
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Preference number: 4 (lower is better) Translates to: LPLSPTHPLPLSGHGIPLEDSQD*GVWGTA Trigger: AGCAGTCCCCCAGACTCCCCAGTCCTGACTGTCTTC...TAGGGGAATGCCGTGGCCAGAAAGTGGGAGTGGGTGGGTTGGTGAGAGGGGGAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR CCA 90 bp | CTCCCCCTCTCACCAACCCACCCACTCCCACTTTCTGGCCACGGCATTCCCCTAATGGAGATGAGCGAGTaGAGGGCCAGCTGTTGGTCG | + |
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Preference number: 4 (lower is better) Translates to: LPLSPTHPLPLSGHGIPLMEMSE*RASCWS Trigger: CGACCAACAGCTGGCCCTCCACTCGCTCATCTCCAT...TAGGGGAATGCCGTGGCCAGAAAGTGGGAGTGGGTGGGTTGGTGAGAGGGGGAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR CCA 90 bp | ACCAACCCACCCACTCCCACTTTCTGGCCACGGCATTCCCCTACACTGGGACATCCAGAGAGGGTTCCCTaGCCCTCCTGCACAGCCTCA | + |
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Preference number: 4 (lower is better) Translates to: TNPPTPTFWPRHSPTLGHPERVP*PSCTAS Trigger: TGAGGCTGTGCAGGAGGGCCAGGGAACCCTCTCTGG...ATGTCCCAGTGTAGGGGAATGCCGTGGCCAGAAAGTGGGAGTGGGTGGGTTGGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR CCA 90 bp | CCCTCTCACCAACCCACCCACTCCCACTTTCTGGCCACGGCATTCCCCTACACTGACAGGGTCCCTGCATaGCTCACATCCACCAGGTGG | + |
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Preference number: 4 (lower is better) Translates to: PSHQPTHSHFLATAFPYTDRVPA*LTSTRW Trigger: CCACCTGGTGGATGTGAGCCATGCAGGGACCCTGTC...AGTGTAGGGGAATGCCGTGGCCAGAAAGTGGGAGTGGGTGGGTTGGTGAGAGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR TCA 90 bp | CCTCTCACCAACCCACCCACTCCCACTTTCTGGCCACGGCATTCCCCTACACTGCGCCATCCAGAGCTGTaGGGATTAAGCTCAGCTCTG | + |
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Preference number: 4 (lower is better) Translates to: PLTNPPTPTFWPRHSPTLRHPEL*GLSSAL Trigger: CAGAGCTGAGCTTAATCCTCACAGCTCTGGATGGCG...CAGTGTAGGGGAATGCCGTGGCCAGAAAGTGGGAGTGGGTGGGTTGGTGAGAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR CCA 90 bp | ACCAACCCACCCACTCCCACTTTCTGGCCACGGCATTCCCCTACACTGGGACATCTCACATCCACCAGGTaGCCAGGAAAGTGGCCCTCA | + |
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Preference number: 4 (lower is better) Translates to: TNPPTPTFWPRHSPTLGHLTSTR*PGKWPS Trigger: TGAGGGCCACTTTCCTGGCCACCTGGTGGATGTGAG...ATGTCCCAGTGTAGGGGAATGCCGTGGCCAGAAAGTGGGAGTGGGTGGGTTGGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR TCA 90 bp | CTCCCCCTCTCACCAACCCACCCACTCCCACTTTCTGGCCACGGCATTCCCCTAACTTGCCTGTTTCGATaGTTTCTCTCCAGCTTCTCC | + |
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Preference number: 4 (lower is better) Translates to: LPLSPTHPLPLSGHGIPLTCLFR*FLSSFS Trigger: GGAGAAGCTGGAGAGAAATCATCGAAACAGGCAAGT...TAGGGGAATGCCGTGGCCAGAAAGTGGGAGTGGGTGGGTTGGTGAGAGGGGGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR GCA 90 bp | CATCGAGCCTTCACAGGACCAAGGGCCTCTCCTCCCATTGATGAGCGACTAGGCGTTGAAGCCCATTGCTaGCCACATCCAAATCCTGGG | + |
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Preference number: 4 (lower is better) Translates to: HRAFTGPRASPPIDERLGVEAHC*PHPNPG Trigger: CCCAGGATTTGGATGTGGGCAGCAATGGGCTTCAAC...GCCTAGTCGCTCATCAATGGGAGGAGAGGCCCTTGGTCCTGTGAAGGCTCGATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR GCA 90 bp | CCCCCTCTCACCAACCCACCCACTCCCACTTTCTGGCCACGGCATTCCCCTACACTGAGCGCAAATAGCTaGCCATTGTCAGCATTGATG | + |
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Preference number: 4 (lower is better) Translates to: PPLTNPPTPTFWPRHSPTLSANS*PLSALM Trigger: CATCAATGCTGACAATGGGCAGCTATTTGCGCTCAG...TGTAGGGGAATGCCGTGGCCAGAAAGTGGGAGTGGGTGGGTTGGTGAGAGGGGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR GCA 90 bp | TGGGGCCATGTGTCCCACCATGTGTACTCTTTGGTTGGTGGTTTAGTCCCTGGGTGGGCAGCACCTCAGTaGAGGGCGCAGAAGCATTCT | + |
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Preference number: 4 (lower is better) Translates to: WGHVSHHVYSLVGGLVPGWAAPQ*RAQKHS Trigger: AGAATGCTTCTGCGCCCTGCACTGAGGTGCTGCCCA...CCCAGGGACTAAACCACCAACCAAAGAGTACACATGGTGGGACACATGGCCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR CCA 90 bp | CTCTCACCAACCCACCCACTCCCACTTTCTGGCCACGGCATTCCCCTACACTGGAGATCCTTGGCCAGATaGGCTACAAAGGAGCCACTT | + |
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Preference number: 4 (lower is better) Translates to: LSPTHPLPLSGHGIPLHWRSLAR*ATKEPL Trigger: AAGTGGCTCCTTTGTAGCCCATCTGGCCAAGGATCT...CCAGTGTAGGGGAATGCCGTGGCCAGAAAGTGGGAGTGGGTGGGTTGGTGAGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR TCA 90 bp | CCCCCTCTCACCAACCCACCCACTCCCACTTTCTGGCCACGGCATTCCCCTACAAATGAGAGTTGGGGTTaGCTGTGTATTGTTGAAGCC | + |
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Preference number: 4 (lower is better) Translates to: PPLTNPPTPTFWPRHSPTNESWG*LCIVEA Trigger: GGCTTCAACAATACACAGTCAACCCCAACTCTCATT...TGTAGGGGAATGCCGTGGCCAGAAAGTGGGAGTGGGTGGGTTGGTGAGAGGGGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR TCA 90 bp | ACCAACCCACCCACTCCCACTTTCTGGCCACGGCATTCCCCTACACTGGGACATTTGACTGTGTATTGTTaGAGCCCATTGCTGCCCACA | + |
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Preference number: 4 (lower is better) Translates to: TNPPTPTFWPRHSPTLGHLTVYC*SPLLPT Trigger: TGTGGGCAGCAATGGGCTTCAACAATACACAGTCAA...ATGTCCCAGTGTAGGGGAATGCCGTGGCCAGAAAGTGGGAGTGGGTGGGTTGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR GCA 90 bp | CATCGAGCCTTCACAGGACCAAGGGCCTCTCCTCCCATTGATGAGCGACTAGGCATTGTTGAAGCCCATTaGTGCCCACATCCAAATCCT | + |
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Preference number: 4 (lower is better) Translates to: HRAFTGPRASPPIDERLGIVEAH*CPHPNP Trigger: AGGATTTGGATGTGGGCAGCAATGGGCTTCAACAAT...GCCTAGTCGCTCATCAATGGGAGGAGAGGCCCTTGGTCCTGTGAAGGCTCGATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR TCA 90 bp | CTGGGACATCGAGCCTTCACAGGACCAAGGGCCTCTCCTCCCATTGATGAGCGATTTCTGGATTTCATCTaGTGCTTGGAACAAGCCATA | + |
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Preference number: 4 (lower is better) Translates to: LGHRAFTGPRASPPIDERFLDFI*CLEQAI Trigger: TATGGCTTGTTCCAAGCATCAGATGAAATCCAGAAA...TCGCTCATCAATGGGAGGAGAGGCCCTTGGTCCTGTGAAGGCTCGATGTCCCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR GCA 90 bp | CCTCTCACCAACCCACCCACTCCCACTTTCTGGCCACGGCATTCCCCTACACTGGAATCTAGAATGAATTaGTGTTTGTCATGGTCAGAC | + |
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Preference number: 4 (lower is better) Translates to: PLTNPPTPTFWPRHSPTLESRMN*CLSWSD Trigger: GTCTGACCATGACAAACAGCAATTCATTCTAGATTC...CAGTGTAGGGGAATGCCGTGGCCAGAAAGTGGGAGTGGGTGGGTTGGTGAGAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR CCA 90 bp | CTCCCCCTCTCACCAACCCACCCACTCCCACTTTCTGGCCACGGCATTCCCCTAATTGAGAAAGTTTTCTaGATTTCATCTGATGCTTGG | + |
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Preference number: 4 (lower is better) Translates to: LPLSPTHPLPLSGHGIPLIEKVF*ISSDAW Trigger: CCAAGCATCAGATGAAATCCAGAAAACTTTCTCAAT...TAGGGGAATGCCGTGGCCAGAAAGTGGGAGTGGGTGGGTTGGTGAGAGGGGGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR TCA 90 bp | CTGGGACATCGAGCCTTCACAGGACCAAGGGCCTCTCCTCCCATTGATGAGCGATCTCAGAATCTAGAATaGATTGCTGTTTGTCATGGT | + |
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Preference number: 4 (lower is better) Translates to: LGHRAFTGPRASPPIDERSQNLE*IAVCHG Trigger: ACCATGACAAACAGCAATTCATTCTAGATTCTGAGA...TCGCTCATCAATGGGAGGAGAGGCCCTTGGTCCTGTGAAGGCTCGATGTCCCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR TCA 90 bp | CATCGAGCCTTCACAGGACCAAGGGCCTCTCCTCCCATTGATGAGCGACTAGGCGTCGTATTTCTCCAGTaGATTCGTTTATTGAGAAAG | + |
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Preference number: 4 (lower is better) Translates to: HRAFTGPRASPPIDERLGVVFLQ*IRLLRK Trigger: CTTTCTCAATAAACGAATTCACTGGAGAAATACGAC...GCCTAGTCGCTCATCAATGGGAGGAGAGGCCCTTGGTCCTGTGAAGGCTCGATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR TCA 90 bp | AAGCTACTAGCATGCATGATGCTCACAAACAAAAACTGTCACAACCTTTGTGTACCAGAGCCTGGCTGCTaGGCTCAGGAGAGCCTCGGT | + |
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Preference number: 4 (lower is better) Translates to: KLLACMMLTNKNCHNLCVPEPGC*AQESLG Trigger: ACCGAGGCTCTCCTGAGCTCAGCAGCCAGGCTCTGG...TACACAAAGGTTGTGACAGTTTTTGTTTGTGAGCATCATGCATGCTAGTAGCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR CCA 90 bp | TGGGGCCATGTGTCCCACCATGTGTACTCTTTGGTTGGTGGTTTAGTCCCTGGGTTTATCTGGGAATTCTaGCGAGTTGTCATTTATATC | + |
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Preference number: 4 (lower is better) Translates to: WGHVSHHVYSLVGGLVPGFIWEF*RVVIYI Trigger: GATATAAATGACAACTCGCCAGAATTCCCAGATAAA...CCCAGGGACTAAACCACCAACCAAAGAGTACACATGGTGGGACACATGGCCCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR CAA 90 bp | TCCCCCTCTCACCAACCCACCCACTCCCACTTTCTGGCCACGGCATTCCCCTACAGCAGCAGCCTGTGCTaGGGTGCATCTCGCTCACTC | + |
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Preference number: 5 (lower is better) Translates to: SPSHQPTHSHFLATAFPYSSSLC*GASRSL Trigger: GAGTGAGCGAGATGCACCCAAGCACAGGCTGCTGCT...GTAGGGGAATGCCGTGGCCAGAAAGTGGGAGTGGGTGGGTTGGTGAGAGGGGGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR CAA 90 bp | CCCTCTCACCAACCCACCCACTCCCACTTTCTGGCCACGGCATTCCCCTACACTCCCAGACCCAGATCCTaGGCCAGATGGGCTACAAAG | + |
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Preference number: 5 (lower is better) Translates to: PSHQPTHSHFLATAFPYTPRPRS*ARWATK Trigger: CTTTGTAGCCCATCTGGCCAAGGATCTGGGTCTGGG...AGTGTAGGGGAATGCCGTGGCCAGAAAGTGGGAGTGGGTGGGTTGGTGAGAGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR CAA 90 bp | TCCCCCTCTCACCAACCCACCCACTCCCACTTTCTGGCCACGGCATTCCCCTACAAGGGCGCATTGTCATaGTCGTCTAGCACCACCACG | + |
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Preference number: 5 (lower is better) Translates to: SPSHQPTHSHFLATAFPYKGALS*SSSTTT Trigger: CGTGGTGGTGCTAGACGACAATGACAATGCGCCCTT...GTAGGGGAATGCCGTGGCCAGAAAGTGGGAGTGGGTGGGTTGGTGAGAGGGGGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR CAA 90 bp | TCCCCCTCTCACCAACCCACCCACTCCCACTTTCTGGCCACGGCATTCCCCTACGGGGTTGACTGTGTATaGTTGAAGCCCATTGCTGCC | + |
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Preference number: 5 (lower is better) Translates to: SPSHQPTHSHFLATAFPYGVDCV*LKPIAA Trigger: GGCAGCAATGGGCTTCAACAATACACAGTCAACCCC...GTAGGGGAATGCCGTGGCCAGAAAGTGGGAGTGGGTGGGTTGGTGAGAGGGGGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR CAA 90 bp | CCCTCTCACCAACCCACCCACTCCCACTTTCTGGCCACGGCATTCCCCTACACTTGCCCATTGTCAGCATaGATGGAGATGAGCGAGTGG | + |
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Preference number: 5 (lower is better) Translates to: PSHQPTHSHFLATAFPYTCPLSA*MEMSEW Trigger: CCACTCGCTCATCTCCATCAATGCTGACAATGGGCA...AGTGTAGGGGAATGCCGTGGCCAGAAAGTGGGAGTGGGTGGGTTGGTGAGAGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR CAA 90 bp | CTCTCACCAACCCACCCACTCCCACTTTCTGGCCACGGCATTCCCCTACACTGGATGGGCTTGAGGAATTaGAACTCACCAGTCCCAGAT | + |
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Preference number: 5 (lower is better) Translates to: LSPTHPLPLSGHGIPLHWMGLRN*NSPVPD Trigger: ATCTGGGACTGGTGAGTTCAAATTCCTCAAGCCCAT...CCAGTGTAGGGGAATGCCGTGGCCAGAAAGTGGGAGTGGGTGGGTTGGTGAGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR CAA 90 bp | ACCAACCCACCCACTCCCACTTTCTGGCCACGGCATTCCCCTACACTGGGACATGCAAATAGCTGCCCATaGTCAGCATTGATGGAGATG | + |
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Preference number: 5 (lower is better) Translates to: TNPPTPTFWPRHSPTLGHANSCP*SALMEM Trigger: CATCTCCATCAATGCTGACAATGGGCAGCTATTTGC...ATGTCCCAGTGTAGGGGAATGCCGTGGCCAGAAAGTGGGAGTGGGTGGGTTGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR CAA 90 bp | AGGCAATCCTCTGGTTACATATGCGGCTGGGGCCATGTGTCCCACCATGTGTACGTTGACTGTGTATTGTaGAAGCCCATTGCTGCCCAC | + |
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Preference number: 5 (lower is better) Translates to: RQSSGYICGWGHVSHHVYVDCVL*KPIAAH Trigger: GTGGGCAGCAATGGGCTTCAACAATACACAGTCAAC...GTACACATGGTGGGACACATGGCCCCAGCCGCATATGTAACCAGAGGATTGCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR CAA 90 bp | TCCCCCTCTCACCAACCCACCCACTCCCACTTTCTGGCCACGGCATTCCCCTACGCACATGATCTGAAATaGAACAAATCATCTTCCCAT | + |
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Preference number: 5 (lower is better) Translates to: SPSHQPTHSHFLATAFPYAHDLK*NKSSSH Trigger: ATGGGAAGATGATTTGTTCAATTTCAGATCATGTGC...GTAGGGGAATGCCGTGGCCAGAAAGTGGGAGTGGGTGGGTTGGTGAGAGGGGGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR CAA 90 bp | TGGGGCCATGTGTCCCACCATGTGTACTCTTTGGTTGGTGGTTTAGTCCCTGGGGGGAATTCTGGCGAGTaGTCATTTATATCCTGGATC | + |
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Preference number: 5 (lower is better) Translates to: WGHVSHHVYSLVGGLVPGGNSGE*SFISWI Trigger: GATCCAGGATATAAATGACAACTCGCCAGAATTCCC...CCCAGGGACTAAACCACCAACCAAAGAGTACACATGGTGGGACACATGGCCCCA 51% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS GCA 90 bp | TTCTCCCTCAGAAGCAAATCTCCAGTCTCAGAATCTAGAATGAATTaGTGTTTGTCATGGTCAGACACCACCCGTGCAGACCTGGCAGCC | + |
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Preference number: 5 (lower is better) Translates to: FSLRSKSPVSESRMN*CLSWSDTTRADLAA Trigger: GGCTGCCAGGTCTGCACGGGTGGTGTCTGACCATGACAAACAGCAATTCATTCTAGATTCTGAGACTGGAGATTTGCTTCTGAGGGAGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS GCA 90 bp | TTTCATCTGATGCTTGGAACAAGCCATAGGAAACTCTCCCAAAGTTaGCAGCATCTGCATCCTGTGCGAAGACAGTCAGGACTGGGGAGT | + |
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Preference number: 5 (lower is better) Translates to: FHLMLGTSHRKLSQS*QHLHPVRRQSGLGS Trigger: ACTCCCCAGTCCTGACTGTCTTCGCACAGGATGCAGATGCTGGCAACTTTGGGAGAGTTTCCTATGGCTTGTTCCAAGCATCAGATGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS TCA 90 bp | CTAGTTTCTCCCTCAGAAGCAAATCTCCAGTCTCAGAATCTAGAATaGATTGCTGTTTGTCATGGTCAGACACCACCCGTGCAGACCTGG | + |
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Preference number: 5 (lower is better) Translates to: LVSPSEANLQSQNLE*IAVCHGQTPPVQTW Trigger: CCAGGTCTGCACGGGTGGTGTCTGACCATGACAAACAGCAATTCATTCTAGATTCTGAGACTGGAGATTTGCTTCTGAGGGAGAAACTAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS TCA 90 bp | TCTGATTCCTCCAAGACAGAGTACCGAGTAGGCACCATGAGGACCTaGTCCCAAAGCAGCATAAAAAGGAAAGGAATCACTTGCCTGTTT | + |
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Preference number: 5 (lower is better) Translates to: SDSSKTEYRVGTMRT*SQSSIKRKGITCLF Trigger: AAACAGGCAAGTGATTCCTTTCCTTTTTATGCTGCTTTGGGATCAGGTCCTCATGGTGCCTACTCGGTACTCTGTCTTGGAGGAATCAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS-3UTR CAA 90 bp | AAGCTACTAGCATGCATGATGCTCACAAACAAAAACTGTCACAACCTTTGTGTAAAGGAAAGGAATCACTaGCCTGTTTCGATGATTTCT | + |
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Preference number: 5 (lower is better) Translates to: KLLACMMLTNKNCHNLCVKERNH*PVSMIS Trigger: AGAAATCATCGAAACAGGCAAGTGATTCCTTTCCTT...TACACAAAGGTTGTGACAGTTTTTGTTTGTGAGCATCATGCATGCTAGTAGCTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS GCA 72 bp | GGAAACTCTCCCAAAGTTGCCAGCATCTGCATCCTGTaGGAAGACAGTCAGGACTGGGGAGTCTGGGGGACT | + |
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Preference number: 6 (lower is better) Translates to: GNSPKVASICIL*EDSQDWGVWGT Trigger: AGTCCCCCAGACTCCCCAGTCCTGACTGTCTTCGCACAGGATGCAGATGCTGGCAACTTTGGGAGAGTTTCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS GCA 72 bp | CAAGCCATAGGAAACTCTCCCAAAGTTGCCAGCATCTaGATCCTGTGCGAAGACAGTCAGGACTGGGGAGTC | + |
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Preference number: 6 (lower is better) Translates to: QAIGNSPKVASI*ILCEDSQDWGV Trigger: GACTCCCCAGTCCTGACTGTCTTCGCACAGGATGCAGATGCTGGCAACTTTGGGAGAGTTTCCTATGGCTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS CAA 90 bp | CTCAGAAGCAAATCTCCAGTCTCAGAATCTAGAATGAATTGCTGTTaGTCATGGTCAGACACCACCCGTGCAGACCTGGCAGCCAGCTCC | + |
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Preference number: 6 (lower is better) Translates to: LRSKSPVSESRMNCC*SWSDTTRADLAASS Trigger: GGAGCTGGCTGCCAGGTCTGCACGGGTGGTGTCTGACCATGACAAACAGCAATTCATTCTAGATTCTGAGACTGGAGATTTGCTTCTGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS TCA 72 bp | CCCTCAGAAGCAAATCTCCAGTCTCAGAATCTAGAATaGATTGCTGTTTGTCATGGTCAGACACCACCCGTG | + |
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Preference number: 6 (lower is better) Translates to: PSEANLQSQNLE*IAVCHGQTPPV Trigger: CACGGGTGGTGTCTGACCATGACAAACAGCAATTCATTCTAGATTCTGAGACTGGAGATTTGCTTCTGAGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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| CDS TCA 72 bp | GAGTTGTCATTTATATCCTGGATCAATAATTCTCCTTaGAAAAACTGCACTGGCTTTTCTAGGAACACTTGG | + |
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Preference number: 6 (lower is better) Translates to: ELSFISWINNSP*KNCTGFSRNTW Trigger: CCAAGTGTTCCTAGAAAAGCCAGTGCAGTTTTTTCAAGGAGAATTATTGATCCAGGATATAAATGACAACTC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078271.4 |
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