Pregenerated sensors for PCDHB4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045689Ensembl transcript IDs: ENSMUST00000056712.4
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CTGGCACTCAAACACAGTATACTGTGCACGCTAAGCAAATACTCTACATTTGAAACATCCAAGCAACTATaGCTTATCCTTCTCTTGTTG | + |
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Preference number: 2 (lower is better) Translates to: LALKHSILCTLSKYSTFETSKQL*LILLLL Trigger: CAACAAGAGAAGGATAAGTCATAGTTGCTTGGATGT...TTCAAATGTAGAGTATTTGCTTAGCGTGCACAGTATACTGTGTTTGAGTGCCAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| 3UTR-3UTR TCA 90 bp | GACAGAGACTCATATAACTCAGATGATCTTAAACATGCTATATGGTGCTGGCACTATTTAGGGACATTGTaGAATTATAGGCGGAGACTG | + |
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Preference number: 2 (lower is better) Translates to: DRDSYNSDDLKHAIWCWHYLGTL*NYRRRL Trigger: CAGTCTCCGCCTATAATTTCACAATGTCCCTAAATA...GTGCCAGCACCATATAGCATGTTTAAGATCATCTGAGTTATATGAGTCTCTGTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| 3UTR-3UTR CCA 90 bp | CTGGCACTCAAACACAGTATACTGTGCACGCTAAGCAAATACTCTACATTTGAATTGCAGGAAAATGAATaGAACAATAGCCACACGCAA | + |
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Preference number: 2 (lower is better) Translates to: LALKHSILCTLSKYSTFELQENE*NNSHTQ Trigger: TTGCGTGTGGCTATTGTTCCATTCATTTTCCTGCAA...TTCAAATGTAGAGTATTTGCTTAGCGTGCACAGTATACTGTGTTTGAGTGCCAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| 3UTR-3UTR GCA 90 bp | ACAGAGACTCATATAACTCAGATGATCTTAAACATGCTATATGGTGCTGGCACTCACAATCTACATGTATaGAAGCACCACAACAAATCC | + |
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Preference number: 2 (lower is better) Translates to: TETHITQMILNMLYGAGTHNLHV*KHHNKS Trigger: GGATTTGTTGTGGTGCTTGCATACATGTAGATTGTG...AGTGCCAGCACCATATAGCATGTTTAAGATCATCTGAGTTATATGAGTCTCTGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| 3UTR-3UTR GCA 90 bp | CAGCCAGGGCTAGTAGAGACCCCTTGTCTCAAAATGTTAATAACAAGTGTCAATACTCTACATTTGAACTaGGCCTATAATCCACATAAT | + |
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Preference number: 2 (lower is better) Translates to: QPGLVETPCLKMLITSVNTLHLN*AYNPHN Trigger: ATTATGTGGATTATAGGCGCAGTTCAAATGTAGAGT...ATTGACACTTGTTATTAACATTTTGAGACAAGGGGTCTCTACTAGCCCTGGCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| 3UTR TCA 72 bp | CCCCATACTCAGGAGGCAGAAGCAGGTGGGTCTCTGTaGGGCCAACTCGGTCTACATAGTGATTCCAGGACA | + |
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Preference number: 3 (lower is better) Translates to: PHTQEAEAGGSL*GQLGLHSDSRT Trigger: TGTCCTGGAATCACTATGTAGACCGAGTTGGCCTCACAGAGACCCACCTGCTTCTGCCTCCTGAGTATGGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| 3UTR GCA 72 bp | GAAATCTCGAATATTAATTGCTGCTGGGTGCTGTGGTaGATGACTTTAATCCCCATACTCAGGAGGCAGAAG | + |
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Preference number: 3 (lower is better) Translates to: EISNINCCWVLW*MTLIPILRRQK Trigger: CTTCTGCCTCCTGAGTATGGGGATTAAAGTCATGCACCACAGCACCCAGCAGCAATTAATATTCGAGATTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| 3UTR CCA 72 bp | GACTCATATAACTCAGATGATCTTAAACATGCTATATaGTGCTGGCACTCAAACACAGTATACTGTGCACGC | + |
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Preference number: 3 (lower is better) Translates to: DSYNSDDLKHAI*CWHSNTVYCAR Trigger: GCGTGCACAGTATACTGTGTTTGAGTGCCAGCACCATATAGCATGTTTAAGATCATCTGAGTTATATGAGTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| 3UTR-3UTR CAA 90 bp | ACAGAGACTCATATAACTCAGATGATCTTAAACATGCTATATGGTGCTGGCACTGTTTGGCATTCTACATaGCTTGTCAAATACACTACA | + |
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Preference number: 3 (lower is better) Translates to: TETHITQMILNMLYGAGTVWHST*LVKYTT Trigger: TGTAGTGTATTTGACAAGCAATGTAGAATGCCAAAC...AGTGCCAGCACCATATAGCATGTTTAAGATCATCTGAGTTATATGAGTCTCTGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS-3UTR CCA 90 bp | GACAGAGACTCATATAACTCAGATGATCTTAAACATGCTATATGGTGCTGGCACCAGGCTCCGCTGCCCTaGGCAGCAGCTCGGTGTAGG | + |
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Preference number: 4 (lower is better) Translates to: DRDSYNSDDLKHAIWCWHQAPLP*AAARCR Trigger: CCTACACCGAGCTGCTGCCCAGGGCAGCGGAGCCTG...GTGCCAGCACCATATAGCATGTTTAAGATCATCTGAGTTATATGAGTCTCTGTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS-3UTR GCA 90 bp | ACAGAGACTCATATAACTCAGATGATCTTAAACATGCTATATGGTGCTGGCACTGTAGCCAGGCTCCGCTaGCCTGGGCAGCAGCTCGGT | + |
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Preference number: 4 (lower is better) Translates to: TETHITQMILNMLYGAGTVARLR*PGQQLG Trigger: ACCGAGCTGCTGCCCAGGGCAGCGGAGCCTGGCTAC...AGTGCCAGCACCATATAGCATGTTTAAGATCATCTGAGTTATATGAGTCTCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS-3UTR TCA 90 bp | GACAGAGACTCATATAACTCAGATGATCTTAAACATGCTATATGGTGCTGGCACCCCATGTCAGGGTCCTaGGCTGCCTTCAGAGGAAAC | + |
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Preference number: 4 (lower is better) Translates to: DRDSYNSDDLKHAIWCWHPMSGS*AAFRGN Trigger: GTTTCCTCTGAAGGCAGCTCAGGACCCTGACATGGG...GTGCCAGCACCATATAGCATGTTTAAGATCATCTGAGTTATATGAGTCTCTGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS-3UTR CCA 90 bp | CAGCCAGGGCTAGTAGAGACCCCTTGTCTCAAAATGTTAATAACAAGTGTCAATAGGAAACACAGTTCCTaGCTGGGCGCTCTCAGGGAT | + |
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Preference number: 4 (lower is better) Translates to: QPGLVETPCLKMLITSVNRKHSS*LGALRD Trigger: ATCCCTGAGAGCGCCCAGCCAGGAACTGTGTTTCCT...ATTGACACTTGTTATTAACATTTTGAGACAAGGGGTCTCTACTAGCCCTGGCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS-3UTR TCA 90 bp | GACAGAGACTCATATAACTCAGATGATCTTAAACATGCTATATGGTGCTGGCACATTGGAGCCCGAGTCTaGGTCTGTGGCACTGATGGT | + |
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Preference number: 4 (lower is better) Translates to: DRDSYNSDDLKHAIWCWHIGARV*VCGTDG Trigger: ACCATCAGTGCCACAGACTCAGACTCGGGCTCCAAT...GTGCCAGCACCATATAGCATGTTTAAGATCATCTGAGTTATATGAGTCTCTGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS-3UTR CCA 90 bp | CAGCCAGGGCTAGTAGAGACCCCTTGTCTCAAAATGTTAATAACAAGTGTCAATTGCAACGACAGTCTCTaGGGAGTTTTCGGGGATAGG | + |
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Preference number: 4 (lower is better) Translates to: QPGLVETPCLKMLITSVNCNDSL*GVFGDR Trigger: CCTATCCCCGAAAACTCCCCAGAGACTGTCGTTGCA...ATTGACACTTGTTATTAACATTTTGAGACAAGGGGTCTCTACTAGCCCTGGCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS-3UTR CCA 90 bp | GACAGAGACTCATATAACTCAGATGATCTTAAACATGCTATATGGTGCTGGCACACAGCAACCTGTGCTTaGGTGCATCTCGCTCGCTCA | + |
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Preference number: 4 (lower is better) Translates to: DRDSYNSDDLKHAIWCWHTATCA*VHLARS Trigger: TGAGCGAGCGAGATGCACCCAAGCACAGGTTGCTGT...GTGCCAGCACCATATAGCATGTTTAAGATCATCTGAGTTATATGAGTCTCTGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS-3UTR GCA 90 bp | GACAGAGACTCATATAACTCAGATGATCTTAAACATGCTATATGGTGCTGGCACGTCAGGGTCCTGAGCTaGCTTCAGAGGAAACACAGT | + |
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Preference number: 4 (lower is better) Translates to: DRDSYNSDDLKHAIWCWHVRVLS*LQRKHS Trigger: ACTGTGTTTCCTCTGAAGGCAGCTCAGGACCCTGAC...GTGCCAGCACCATATAGCATGTTTAAGATCATCTGAGTTATATGAGTCTCTGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS-3UTR CCA 90 bp | CAGCCAGGGCTAGTAGAGACCCCTTGTCTCAAAATGTTAATAACAAGTGTCAATAGAGACCGTCAACTCTaGGGCGTTATCATTCACATC | + |
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Preference number: 4 (lower is better) Translates to: QPGLVETPCLKMLITSVNRDRQL*GVIIHI Trigger: GATGTGAATGATAACGCCCCAGAGTTGACGGTCTCT...ATTGACACTTGTTATTAACATTTTGAGACAAGGGGTCTCTACTAGCCCTGGCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS-3UTR TCA 90 bp | CAGCCAGGGCTAGTAGAGACCCCTTGTCTCAAAATGTTAATAACAAGTGTCAATAGCTGCAGTTCAGTTTaGAAGAACTGCACAGGGTTT | + |
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Preference number: 4 (lower is better) Translates to: QPGLVETPCLKMLITSVNSCSSV*KNCTGF Trigger: AAACCCTGTGCAGTTCTTTCAAACTGAACTGCAGCT...ATTGACACTTGTTATTAACATTTTGAGACAAGGGGTCTCTACTAGCCCTGGCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS-3UTR GCA 90 bp | ACAGAGACTCATATAACTCAGATGATCTTAAACATGCTATATGGTGCTGGCACTGATCCCCAGATCTTGTaGCAGGTTAGCCACCAAGTA | + |
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Preference number: 4 (lower is better) Translates to: TETHITQMILNMLYGAGTDPQIL*QVSHQV Trigger: TACTTGGTGGCTAACCTGGCACAAGATCTGGGGATC...AGTGCCAGCACCATATAGCATGTTTAAGATCATCTGAGTTATATGAGTCTCTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS-3UTR GCA 90 bp | ACAGAGACTCATATAACTCAGATGATCTTAAACATGCTATATGGTGCTGGCACTCAGATTTCCTGTCTCTaGATCCAGCTGCAAGAGGTC | + |
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Preference number: 4 (lower is better) Translates to: TETHITQMILNMLYGAGTQISCL*IQLQEV Trigger: GACCTCTTGCAGCTGGATGCAGAGACAGGAAATCTG...AGTGCCAGCACCATATAGCATGTTTAAGATCATCTGAGTTATATGAGTCTCTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS-3UTR GCA 90 bp | CTGGCACTCAAACACAGTATACTGTGCACGCTAAGCAAATACTCTACATTTGAACCCTCCATCCGTGGCTaGGATTTCCACATTATAGTA | + |
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Preference number: 4 (lower is better) Translates to: LALKHSILCTLSKYSTFEPSIRG*DFHIIV Trigger: TACTATAATGTGGAAATCGCAGCCACGGATGGAGGG...TTCAAATGTAGAGTATTTGCTTAGCGTGCACAGTATACTGTGTTTGAGTGCCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS-3UTR GCA 90 bp | ACAGAGACTCATATAACTCAGATGATCTTAAACATGCTATATGGTGCTGGCACTGTCTCTGCATCCAGCTaGAAGAGGTCTTTGTTTCCT | + |
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Preference number: 4 (lower is better) Translates to: TETHITQMILNMLYGAGTVSASS*KRSLFP Trigger: AGGAAACAAAGACCTCTTGCAGCTGGATGCAGAGAC...AGTGCCAGCACCATATAGCATGTTTAAGATCATCTGAGTTATATGAGTCTCTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS-3UTR GCA 90 bp | ACAGAGACTCATATAACTCAGATGATCTTAAACATGCTATATGGTGCTGGCACTAGTATGATCTGGAAGTaGAGCACACAGGGTTCTGTC | + |
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Preference number: 4 (lower is better) Translates to: TETHITQMILNMLYGAGTSMIWK*STQGSV Trigger: GACAGAACCCTGTGTGCTGCACTTCCAGATCATACT...AGTGCCAGCACCATATAGCATGTTTAAGATCATCTGAGTTATATGAGTCTCTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS-3UTR GCA 90 bp | ACAGAGACTCATATAACTCAGATGATCTTAAACATGCTATATGGTGCTGGCACTCCTGAACAGCTACAGTaGATTTTCCTGAAAGTCCCC | + |
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Preference number: 4 (lower is better) Translates to: TETHITQMILNMLYGAGTPEQLQ*IFLKVP Trigger: GGGGACTTTCAGGAAAATGCACTGTAGCTGTTCAGG...AGTGCCAGCACCATATAGCATGTTTAAGATCATCTGAGTTATATGAGTCTCTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS-3UTR TCA 90 bp | CTGGCACTCAAACACAGTATACTGTGCACGCTAAGCAAATACTCTACATTTGAATCCATGATTTCAATATaGACTGTGGTCATCCCAGAC | + |
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Preference number: 4 (lower is better) Translates to: LALKHSILCTLSKYSTFESMISI*TVVIPD Trigger: GTCTGGGATGACCACAGTTCATATTGAAATCATGGA...TTCAAATGTAGAGTATTTGCTTAGCGTGCACAGTATACTGTGTTTGAGTGCCAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS-3UTR TCA 90 bp | CTGGCACTCAAACACAGTATACTGTGCACGCTAAGCAAATACTCTACATTTGAATTCACATCCAACACCTaGACAGCTACAGTGCATTTT | + |
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Preference number: 4 (lower is better) Translates to: LALKHSILCTLSKYSTFEFTSNT*TATVHF Trigger: AAAATGCACTGTAGCTGTTCAGGTGTTGGATGTGAA...TTCAAATGTAGAGTATTTGCTTAGCGTGCACAGTATACTGTGTTTGAGTGCCAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS-3UTR GCA 90 bp | CAGCCAGGGCTAGTAGAGACCCCTTGTCTCAAAATGTTAATAACAAGTGTCAATTTGATGTCAGACACCTaGACTTTTATAGTATGCTGG | + |
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Preference number: 4 (lower is better) Translates to: QPGLVETPCLKMLITSVNLMSDT*TFIVCW Trigger: CCAGCATACTATAAAAGTGCAGGTGTCTGACATCAA...ATTGACACTTGTTATTAACATTTTGAGACAAGGGGTCTCTACTAGCCCTGGCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS-3UTR CCA 90 bp | CTGGCACTCAAACACAGTATACTGTGCACGCTAAGCAAATACTCTACATTTGAATTTCAATATGAACTGTaGTCATCCCAGACCTTCGTG | + |
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Preference number: 4 (lower is better) Translates to: LALKHSILCTLSKYSTFEFQYEL*SSQTFV Trigger: CACGAAGGTCTGGGATGACCACAGTTCATATTGAAA...TTCAAATGTAGAGTATTTGCTTAGCGTGCACAGTATACTGTGTTTGAGTGCCAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS-3UTR CCA 90 bp | CTGGCACTCAAACACAGTATACTGTGCACGCTAAGCAAATACTCTACATTTGAAAGCGATTGTACAAACTaGGGAGCATTGTCATTGATG | + |
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Preference number: 4 (lower is better) Translates to: LALKHSILCTLSKYSTFESDCTN*GALSLM Trigger: CATCAATGACAATGCTCCCCAGTTTGTACAATCGCT...TTCAAATGTAGAGTATTTGCTTAGCGTGCACAGTATACTGTGTTTGAGTGCCAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS-3UTR TCA 90 bp | GACAGAGACTCATATAACTCAGATGATCTTAAACATGCTATATGGTGCTGGCACATATTTAATTGCCTCTaGACCAGACACCCACAAAAG | + |
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Preference number: 4 (lower is better) Translates to: DRDSYNSDDLKHAIWCWHIFNCL*TRHPQK Trigger: CTTTTGTGGGTGTCTGGTTCAGAGGCAATTAAATAT...GTGCCAGCACCATATAGCATGTTTAAGATCATCTGAGTTATATGAGTCTCTGTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS-3UTR TCA 90 bp | GACAGAGACTCATATAACTCAGATGATCTTAAACATGCTATATGGTGCTGGCACGGTCATTTATATCTGTaGGCTGCAGTTCAGTTTGAA | + |
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Preference number: 4 (lower is better) Translates to: DRDSYNSDDLKHAIWCWHGHLYL*AAVQFE Trigger: TTCAAACTGAACTGCAGCTCACAGATATAAATGACC...GTGCCAGCACCATATAGCATGTTTAAGATCATCTGAGTTATATGAGTCTCTGTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS-3UTR TCA 90 bp | ACAGAGACTCATATAACTCAGATGATCTTAAACATGCTATATGGTGCTGGCACTAATGGAAGTTCGTTCTaGATAGAGCACACCATCCTT | + |
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Preference number: 4 (lower is better) Translates to: TETHITQMILNMLYGAGTNGSSF*IEHTIL Trigger: AAGGATGGTGTGCTCTATTCAGAACGAACTTCCATT...AGTGCCAGCACCATATAGCATGTTTAAGATCATCTGAGTTATATGAGTCTCTGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS-3UTR GCA 90 bp | CTGGCACTCAAACACAGTATACTGTGCACGCTAAGCAAATACTCTACATTTGAACAAAGTCCAACTTTTTaGTTAGACGGATTTCTCCTG | + |
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Preference number: 4 (lower is better) Translates to: LALKHSILCTLSKYSTFEQSPTF*LDGFLL Trigger: CAGGAGAAATCCGTCTAAGCAAAAAGTTGGACTTTG...TTCAAATGTAGAGTATTTGCTTAGCGTGCACAGTATACTGTGTTTGAGTGCCAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS-3UTR CCA 90 bp | ACAGAGACTCATATAACTCAGATGATCTTAAACATGCTATATGGTGCTGGCACTTTTTTCAGTATGATCTaGAAGTGCAGCACACAGGGT | + |
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Preference number: 4 (lower is better) Translates to: TETHITQMILNMLYGAGTFFSMI*KCSTQG Trigger: ACCCTGTGTGCTGCACTTCCAGATCATACTGAAAAA...AGTGCCAGCACCATATAGCATGTTTAAGATCATCTGAGTTATATGAGTCTCTGT 40% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS-3UTR GCA 90 bp | ACAGAGACTCATATAACTCAGATGATCTTAAACATGCTATATGGTGCTGGCACTAAAACAACTTGCCTTTaGTGTGACATTTTTGCTAGC | + |
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Preference number: 4 (lower is better) Translates to: TETHITQMILNMLYGAGTKTTCL*CDIFAS Trigger: GCTAGCAAAAATGTCACAGCAAAGGCAAGTTGTTTT...AGTGCCAGCACCATATAGCATGTTTAAGATCATCTGAGTTATATGAGTCTCTGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS-3UTR CCA 90 bp | GACAGAGACTCATATAACTCAGATGATCTTAAACATGCTATATGGTGCTGGCACCAACATGTAATTGTCTaGAATCAGACTATTGGGATT | + |
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Preference number: 4 (lower is better) Translates to: DRDSYNSDDLKHAIWCWHQHVIV*NQTIGI Trigger: AATCCCAATAGTCTGATTCCAGACAATTACATGTTG...GTGCCAGCACCATATAGCATGTTTAAGATCATCTGAGTTATATGAGTCTCTGTC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS TCA 90 bp | TTTCCTGTCTCTGCATCCAGCTGCAAGAGGTCTTTGTTTCCTCTGTaGTGGACTCGTGCCTCTCTAGCTGCCAGTTCCCCAACCCTGATC | + |
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Preference number: 5 (lower is better) Translates to: FPVSASSCKRSLFPL*WTRASLAASSPTLI Trigger: GATCAGGGTTGGGGAACTGGCAGCTAGAGAGGCACGAGTCCATCACAGAGGAAACAAAGACCTCTTGCAGCTGGATGCAGAGACAGGAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS-3UTR CAA 90 bp | CAGCCAGGGCTAGTAGAGACCCCTTGTCTCAAAATGTTAATAACAAGTGTCAATGGGCGCTCTCAGGGATaGTTAGGAGCATTTCCGTGT | + |
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Preference number: 5 (lower is better) Translates to: QPGLVETPCLKMLITSVNGRSQG*LGAFPC Trigger: ACACGGAAATGCTCCTAACAATCCCTGAGAGCGCCC...ATTGACACTTGTTATTAACATTTTGAGACAAGGGGTCTCTACTAGCCCTGGCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS-3UTR CAA 90 bp | CTGGCACTCAAACACAGTATACTGTGCACGCTAAGCAAATACTCTACATTTGAAAACAGCAACCTGTGCTaGGGTGCATCTCGCTCGCTC | + |
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Preference number: 5 (lower is better) Translates to: LALKHSILCTLSKYSTFENSNLC*GASRSL Trigger: GAGCGAGCGAGATGCACCCAAGCACAGGTTGCTGTT...TTCAAATGTAGAGTATTTGCTTAGCGTGCACAGTATACTGTGTTTGAGTGCCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS-3UTR CAA 90 bp | GACAGAGACTCATATAACTCAGATGATCTTAAACATGCTATATGGTGCTGGCACGGCTCTCCATTGTCCTaGACCAGCAACAGCAACCTG | + |
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Preference number: 5 (lower is better) Translates to: DRDSYNSDDLKHAIWCWHGSPLS*TSNSNL Trigger: CAGGTTGCTGTTGCTGGTCAAGGACAATGGAGAGCC...GTGCCAGCACCATATAGCATGTTTAAGATCATCTGAGTTATATGAGTCTCTGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS-3UTR CAA 90 bp | ACAGAGACTCATATAACTCAGATGATCTTAAACATGCTATATGGTGCTGGCACTCCTGATCCCCAGATCTaGTGCCAGGTTAGCCACCAA | + |
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Preference number: 5 (lower is better) Translates to: TETHITQMILNMLYGAGTPDPQI*CQVSHQ Trigger: TTGGTGGCTAACCTGGCACAAGATCTGGGGATCAGG...AGTGCCAGCACCATATAGCATGTTTAAGATCATCTGAGTTATATGAGTCTCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS-3UTR CAA 90 bp | CTGGCACTCAAACACAGTATACTGTGCACGCTAAGCAAATACTCTACATTTGAACACACCATCCTTCCATaGTCCCCAGAATCTGGGTCA | + |
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Preference number: 5 (lower is better) Translates to: LALKHSILCTLSKYSTFEHTILP*SPESGS Trigger: TGACCCAGATTCTGGGGACAATGGAAGGATGGTGTG...TTCAAATGTAGAGTATTTGCTTAGCGTGCACAGTATACTGTGTTTGAGTGCCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS-3UTR CAA 90 bp | CAGCCAGGGCTAGTAGAGACCCCTTGTCTCAAAATGTTAATAACAAGTGTCAATGGAGTCTCCATCACCTaGAAACAGAGAGTAGGCTAT | + |
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Preference number: 5 (lower is better) Translates to: QPGLVETPCLKMLITSVNGVSIT*KQRVGY Trigger: ATAGCCTACTCTCTGTTTCAAGGTGATGGAGACTCC...ATTGACACTTGTTATTAACATTTTGAGACAAGGGGTCTCTACTAGCCCTGGCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS-3UTR CAA 90 bp | GACAGAGACTCATATAACTCAGATGATCTTAAACATGCTATATGGTGCTGGCACTCTGGAATCAGACTATaGGGATTGCTGGGCTTCAGG | + |
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Preference number: 5 (lower is better) Translates to: DRDSYNSDDLKHAIWCWHSGIRL*GLLGFR Trigger: CCTGAAGCCCAGCAATCCCAATAGTCTGATTCCAGA...GTGCCAGCACCATATAGCATGTTTAAGATCATCTGAGTTATATGAGTCTCTGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS-3UTR CAA 90 bp | ACAGAGACTCATATAACTCAGATGATCTTAAACATGCTATATGGTGCTGGCACTTGGGGAGCATTGTCATaGATGTCCATGATTTCAATA | + |
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Preference number: 5 (lower is better) Translates to: TETHITQMILNMLYGAGTWGALS*MSMISI Trigger: TATTGAAATCATGGACATCAATGACAATGCTCCCCA...AGTGCCAGCACCATATAGCATGTTTAAGATCATCTGAGTTATATGAGTCTCTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS CAA 72 bp | AATGCCCTGAGCGCAAACAGCTGCCCGTTGTCAGCGTaGATGGAGATGAGCGAGGAGAGGGCCAGCTGCGGG | + |
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Preference number: 6 (lower is better) Translates to: NALSANSCPLSA*MEMSEERASCG Trigger: CCCGCAGCTGGCCCTCTCCTCGCTCATCTCCATCAACGCTGACAACGGGCAGCTGTTTGCGCTCAGGGCATT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS CAA 72 bp | GAGGAAACACAGTTCCTGGCTGGGCGCTCTCAGGGATaGTTAGGAGCATTTCCGTGTCAGGGAACTCCGGAG | + |
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Preference number: 6 (lower is better) Translates to: EETQFLAGRSQG*LGAFPCQGTPE Trigger: CTCCGGAGTTCCCTGACACGGAAATGCTCCTAACAATCCCTGAGAGCGCCCAGCCAGGAACTGTGTTTCCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS TCA 72 bp | GCTGAGAGAAACCATCCACCACTAGCACGTGCATTGTaGCACTGGCAGAGCGCAGAGGCTCTCCATTGTCCT | + |
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Preference number: 6 (lower is better) Translates to: AERNHPPLARAL*HWQSAEALHCP Trigger: AGGACAATGGAGAGCCTCTGCGCTCTGCCAGTGTCACAATGCACGTGCTAGTGGTGGATGGTTTCTCTCAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS TCA 72 bp | TCTGCATCCAGCTGCAAGAGGTCTTTGTTTCCTCTGTaGTGGACTCGTGCCTCTCTAGCTGCCAGTTCCCCA | + |
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Preference number: 6 (lower is better) Translates to: SASSCKRSLFPL*WTRASLAASSP Trigger: TGGGGAACTGGCAGCTAGAGAGGCACGAGTCCATCACAGAGGAAACAAAGACCTCTTGCAGCTGGATGCAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS GCA 72 bp | TTTGTTTCCTCTGTGATGGACTCGTGCCTCTCTAGCTaGCAGTTCCCCAACCCTGATCCCCAGATCTTGTGC | + |
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Preference number: 6 (lower is better) Translates to: FVSSVMDSCLSS*QFPNPDPQILC Trigger: GCACAAGATCTGGGGATCAGGGTTGGGGAACTGGCAGCTAGAGAGGCACGAGTCCATCACAGAGGAAACAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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| CDS GCA 72 bp | AAGAACTGCACAGGGTTTTTCAGTATGATCTGGAAGTaGAGCACACAGGGTTCTGTCGCCCCGCAAAGCCCC | + |
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Preference number: 6 (lower is better) Translates to: KNCTGFFSMIWK*STQGSVAPQSP Trigger: GGGGCTTTGCGGGGCGACAGAACCCTGTGTGCTGCACTTCCAGATCATACTGAAAAACCCTGTGCAGTTCTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000056712.4 |
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