Pregenerated sensors for PCDHB3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045498Ensembl transcript IDs: ENSMUST00000051754.2
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTTTTGTATACATGGTGCTCACAACAGAACAGGGCACAACTTCTGTaGACTGATGGTTTCAGGAAGCAAGCTTTTACGTACAGTTTAGGA | + |
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Preference number: 1 (lower is better) Translates to: LLYTWCSQQNRAQLL*TDGFRKQAFTYSLG Trigger: TCCTAAACTGTACGTAAAAGCTTGCTTCCTGAAACCATCAGTGCACAGAAGTTGTGCCCTGTTCTGTTGTGAGCACCATGTATACAAAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| 3UTR CAA 90 bp | TCAGTATCAAACATAAGAGCCACGCATCAGAAGAAATTTCCTCTTTaGAAAGGTAGAGGAAGCAAAGAGATCCCAAGAAAATACAGTCTG | + |
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Preference number: 2 (lower is better) Translates to: SVSNIRATHQKKFPL*KGRGSKEIPRKYSL Trigger: CAGACTGTATTTTCTTGGGATCTCTTTGCTTCCTCTACCTTTCAAAAGAGGAAATTTCTTCTGATGCGTGGCTCTTATGTTTGATACTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| 3UTR-3UTR TCA 90 bp | AGAGGAAGCAAAGAGATCCCAAGAAAATACAGTCTGTCATCATACTTAGACTTCTGGTCTTACTACTTATaGCATGCCTTTGAACAAATG | + |
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Preference number: 2 (lower is better) Translates to: RGSKEIPRKYSLSSYLDFWSYYL*HAFEQM Trigger: CATTTGTTCAAAGGCATGTCATAAGTAGTAAGACCA...GAAGTCTAAGTATGATGACAGACTGTATTTTCTTGGGATCTCTTTGCTTCCTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| 3UTR-3UTR GCA 90 bp | ATTCTACTTATAAATTACATGGCAGCTTTATTAGACCTGCAGAACATGACAAGCTGTTATTCAGACAAGTaGGATGTGGTTCTGGGGTAT | + |
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Preference number: 2 (lower is better) Translates to: ILLINYMAALLDLQNMTSCYSDK*DVVLGY Trigger: ATACCCCAGAACCACATCGCACTTGTCTGAATAACA...GCTTGTCATGTTCTGCAGGTCTAATAAAGCTGCCATGTAATTTATAAGTAGAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| 3UTR-3UTR CCA 90 bp | CAAACCAGTGGTTTAACGGACTGGATTCACAAAAACGAAGATCAAGCATATGATCTATTTGGGATACCATaGCTTGAATTACTGATAAAG | + |
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Preference number: 2 (lower is better) Translates to: QTSGLTDWIHKNEDQAYDLFGIP*LELLIK Trigger: CTTTATCAGTAATTCAAGCCATGGTATCCCAAATAG...ATCATATGCTTGATCTTCGTTTTTGTGAATCCAGTCCGTTAAACCACTGGTTTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| 3UTR GCA 72 bp | ACATGGTGCTCACAACAGAACAGGGCACAACTTCTGTaGACTGATGGTTTCAGGAAGCAAGCTTTTACGTAC | + |
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Preference number: 3 (lower is better) Translates to: TWCSQQNRAQLL*TDGFRKQAFTY Trigger: GTACGTAAAAGCTTGCTTCCTGAAACCATCAGTGCACAGAAGTTGTGCCCTGTTCTGTTGTGAGCACCATGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| 3UTR-3UTR CAA 90 bp | AGAGGAAGCAAAGAGATCCCAAGAAAATACAGTCTGTCATCATACTTAGACTTCCTAACTTACAAGGAGTaGCTTCATAATTCTGCTTCT | + |
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Preference number: 3 (lower is better) Translates to: RGSKEIPRKYSLSSYLDFLTYKE*LHNSAS Trigger: AGAAGCAGAATTATGAAGCAACTCCTTGTAAGTTAG...GAAGTCTAAGTATGATGACAGACTGTATTTTCTTGGGATCTCTTTGCTTCCTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| 3UTR TCA 72 bp | TTGGGACGTTTGGTCTTACTACTTATGACATGCCTTTaGACAAATGAACATAACAATCTTTTGTATACATGG | + |
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Preference number: 3 (lower is better) Translates to: LGRLVLLLMTCL*TNEHNNLLYTW Trigger: CCATGTATACAAAAGATTGTTATGTTCATTTGTTCAAAGGCATGTCATAAGTAGTAAGACCAAACGTCCCAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| 3UTR GCA 72 bp | ATTTCATTAACTGTTAGGATAATCATCGCTCAGACATaGCTAAATAGAGAGAAAATGAATAGGCACAACTAC | + |
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Preference number: 3 (lower is better) Translates to: ISLTVRIIIAQT*LNREKMNRHNY Trigger: GTAGTTGTGCCTATTCATTTTCTCTCTATTTAGGCATGTCTGAGCGATGATTATCCTAACAGTTAATGAAAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| 3UTR CCA 72 bp | TTAAAAGGATTGTGTCAAACCAGTGGTTTAACGGACTaGATTCACAAAAACGAAGATCAAGCATATGATATT | + |
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Preference number: 3 (lower is better) Translates to: LKGLCQTSGLTD*IHKNEDQAYDI Trigger: AATATCATATGCTTGATCTTCGTTTTTGTGAATCCAGTCCGTTAAACCACTGGTTTGACACAATCCTTTTAA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| CDS-3UTR TCA 90 bp | GATGCCCTCAAGAGTCCTCAACTAACTTACAAGGAGTTGCTTCATAATTCTGCTCCAGAGCCTGGCTGCTaGGCGCGGGTGAGCCTCCAT | + |
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Preference number: 4 (lower is better) Translates to: DALKSPQLTYKELLHNSAPEPGC*ARVSLH Trigger: ATGGAGGCTCACCCGCGCTCAGCAGCCAGGCTCTGG...AGCAGAATTATGAAGCAACTCCTTGTAAGTTAGTTGAGGACTCTTGAGGGCATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| CDS-3UTR GCA 90 bp | GATGCCCTCAAGAGTCCTCAACTAACTTACAAGGAGTTGCTTCATAATTCTGCTTGGGCAGCAGCTCAGTaGAGGGCGCAGAAGCGTTCT | + |
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Preference number: 4 (lower is better) Translates to: DALKSPQLTYKELLHNSAWAAAQ*RAQKRS Trigger: AGAACGCTTCTGCGCCCTGCACTGAGCTGCTGCCCA...AGCAGAATTATGAAGCAACTCCTTGTAAGTTAGTTGAGGACTCTTGAGGGCATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| CDS-3UTR TCA 90 bp | CATAACAATCTTTTGTATACATGGTGCTCACAACAGAACAGGGCACAACTTCTGCGGGCTCTGTGGACTTaGGCAGCTGGAATGACAGCC | + |
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Preference number: 4 (lower is better) Translates to: HNNLLYTWCSQQNRAQLLRALWT*AAGMTA Trigger: GGCTGTCATTCCAGCTGCTCAAGTCCACAGAGCCCG...CAGAAGTTGTGCCCTGTTCTGTTGTGAGCACCATGTATACAAAAGATTGTTATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| CDS-3UTR TCA 90 bp | GGAAGGAAGGAGAAAGTTGATGCCCTCAAGAGTCCTCAACTAACTTACAAGGAGCCTTTGGAGATAGCTTaGGCTCTCCTTTCAGCCAGT | + |
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Preference number: 4 (lower is better) Translates to: GRKEKVDALKSPQLTYKEPLEIA*ALLSAS Trigger: ACTGGCTGAAAGGAGAGCTCAAGCTATCTCCAAAGG...CTCCTTGTAAGTTAGTTGAGGACTCTTGAGGGCATCAACTTTCTCCTTCCTTCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| CDS-3UTR CCA 90 bp | GGAAGGAAGGAGAAAGTTGATGCCCTCAAGAGTCCTCAACTAACTTACAAGGAGTCTAAGACCAGGATGTaGACCTGGGTAGTTCCAGAA | + |
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Preference number: 4 (lower is better) Translates to: GRKEKVDALKSPQLTYKESKTRM*TWVVPE Trigger: TTCTGGAACTACCCAGGTCCACATCCTGGTCTTAGA...CTCCTTGTAAGTTAGTTGAGGACTCTTGAGGGCATCAACTTTCTCCTTCCTTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| CDS-3UTR CCA 90 bp | CAAACCAGTGGTTTAACGGACTGGATTCACAAAAACGAAGATCAAGCATATGATCTGACGTCCACCAGGTaGCCAGGAAAGTGTCCCTCA | + |
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Preference number: 4 (lower is better) Translates to: QTSGLTDWIHKNEDQAYDLTSTR*PGKCPS Trigger: TGAGGGACACTTTCCTGGCCACCTGGTGGACGTCAG...ATCATATGCTTGATCTTCGTTTTTGTGAATCCAGTCCGTTAAACCACTGGTTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| CDS-3UTR GCA 90 bp | ATTCTACTTATAAATTACATGGCAGCTTTATTAGACCTGCAGAACATGACAAGCGTCCAGCGCCCTGAGTaGAAACAGCTGCCCGTTGTC | + |
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Preference number: 4 (lower is better) Translates to: ILLINYMAALLDLQNMTSVQRPE*KQLPVV Trigger: GACAACGGGCAGCTGTTTGCACTCAGGGCGCTGGAC...GCTTGTCATGTTCTGCAGGTCTAATAAAGCTGCCATGTAATTTATAAGTAGAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| CDS-3UTR GCA 90 bp | ATTCTACTTATAAATTACATGGCAGCTTTATTAGACCTGCAGAACATGACAAGCCTGCTCTGGCCCTCCTaGACAGTCTCACCCCCACAA | + |
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Preference number: 4 (lower is better) Translates to: ILLINYMAALLDLQNMTSLLWPS*TVSPPQ Trigger: TTGTGGGGGTGAGACTGTGCAGGAGGGCCAGAGCAG...GCTTGTCATGTTCTGCAGGTCTAATAAAGCTGCCATGTAATTTATAAGTAGAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| CDS-3UTR TCA 90 bp | CATAACAATCTTTTGTATACATGGTGCTCACAACAGAACAGGGCACAACTTCTGGATCCCCATTGTCCTTaGCCAGTAGCAGCAGCTTTT | + |
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Preference number: 4 (lower is better) Translates to: HNNLLYTWCSQQNRAQLLDPHCP*PVAAAF Trigger: AAAAGCTGCTGCTACTGGTCAAGGACAATGGGGATC...CAGAAGTTGTGCCCTGTTCTGTTGTGAGCACCATGTATACAAAAGATTGTTATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| CDS-3UTR GCA 90 bp | CATAACAATCTTTTGTATACATGGTGCTCACAACAGAACAGGGCACAACTTCTGAGTAGCAGCAGCTTTTaGTTGAGCATATCGCGCTCA | + |
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Preference number: 4 (lower is better) Translates to: HNNLLYTWCSQQNRAQLLSSSSF*LSISRS Trigger: TGAGCGCGATATGCTCAAGCAAAAGCTGCTGCTACT...CAGAAGTTGTGCCCTGTTCTGTTGTGAGCACCATGTATACAAAAGATTGTTATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| CDS-3UTR TCA 90 bp | GTAAAGACATTCATTTCATTAACTGTTAGGATAATCATCGCTCAGACATGCCTAGACTGTGCATTTCCCTaGAAGGCCTCCACCATCCTT | + |
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Preference number: 4 (lower is better) Translates to: VKTFISLTVRIIIAQTCLDCAFP*KASTIL Trigger: AAGGATGGTGGAGGCCTTTCAGGGAAATGCACAGTC...TAGGCATGTCTGAGCGATGATTATCCTAACAGTTAATGAAATGAATGTCTTTAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| CDS-3UTR TCA 90 bp | GTAAAGACATTCATTTCATTAACTGTTAGGATAATCATCGCTCAGACATGCCTACCGGATTCAGGAGTTTaGACTCACCAGTCCCAGCAT | + |
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Preference number: 4 (lower is better) Translates to: VKTFISLTVRIIIAQTCLPDSGV*THQSQH Trigger: ATGCTGGGACTGGTGAGTTCAAACTCCTGAATCCGG...TAGGCATGTCTGAGCGATGATTATCCTAACAGTTAATGAAATGAATGTCTTTAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| CDS-3UTR GCA 90 bp | CATAACAATCTTTTGTATACATGGTGCTCACAACAGAACAGGGCACAACTTCTGTCCAGGACTTTCAGCTaGATTGCATTTTCAAAGAAC | + |
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Preference number: 4 (lower is better) Translates to: HNNLLYTWCSQQNRAQLLSRTFS*IAFSKN Trigger: GTTCTTTGAAAATGCAATGCAGCTGAAAGTCCTGGA...CAGAAGTTGTGCCCTGTTCTGTTGTGAGCACCATGTATACAAAAGATTGTTATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| CDS-3UTR TCA 90 bp | ATTCTACTTATAAATTACATGGCAGCTTTATTAGACCTGCAGAACATGACAAGCCTCCGGTCTGATGACTaGGCTGAAAATACTGTATGT | + |
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Preference number: 4 (lower is better) Translates to: ILLINYMAALLDLQNMTSLRSDD*AENTVC Trigger: ACATACAGTATTTTCAGCTCAGTCATCAGACCGGAG...GCTTGTCATGTTCTGCAGGTCTAATAAAGCTGCCATGTAATTTATAAGTAGAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| CDS-3UTR TCA 90 bp | AGAGGAAGCAAAGAGATCCCAAGAAAATACAGTCTGTCATCATACTTAGACTTCCAAGTATCTGAACTATaGCTGTGCATTTCCCTGAAA | + |
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Preference number: 4 (lower is better) Translates to: RGSKEIPRKYSLSSYLDFQVSEL*LCISLK Trigger: TTTCAGGGAAATGCACAGTCATAGTTCAGATACTTG...GAAGTCTAAGTATGATGACAGACTGTATTTTCTTGGGATCTCTTTGCTTCCTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| 3UTR CAA 72 bp | AACATAAGAGCCACGCATCAGAAGAAATTTCCTCTTTaGAAAGGTAGAGGAAGCAAAGAGATCCCAAGAAAA | + |
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Preference number: 4 (lower is better) Translates to: NIRATHQKKFPL*KGRGSKEIPRK Trigger: TTTTCTTGGGATCTCTTTGCTTCCTCTACCTTTCAAAAGAGGAAATTTCTTCTGATGCGTGGCTCTTATGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| CDS GCA 90 bp | CCAGAGCTCTGTCTAGAACTAGCTCTGGATACTTTCTTCCATCCCTaGGACGGCGGGTGTGAACATGAAAATGAGACGTGGGAGAGACCG | + |
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Preference number: 5 (lower is better) Translates to: PELCLELALDTFFHP*DGGCEHENETWERP Trigger: CGGTCTCTCCCACGTCTCATTTTCATGTTCACACCCGCCGTCGCAGGGATGGAAGAAAGTATCCAGAGCTAGTTCTAGACAGAGCTCTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| CDS-3UTR CAA 90 bp | TCATACTTAGACTTCCACCCCGTGGTAAAGGAAGGAAGGAGAAAGTTGATGCCCGCAAACAGCTGCCCGTaGTCAGCATTGATGGAGATG | + |
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Preference number: 5 (lower is better) Translates to: SYLDFHPVVKEGRRKLMPANSCP*SALMEM Trigger: CATCTCCATCAATGCTGACAACGGGCAGCTGTTTGC...GGGCATCAACTTTCTCCTTCCTTCCTTTACCACGGGGTGGAAGTCTAAGTATGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| CDS-3UTR CAA 90 bp | TCATACTTAGACTTCCACCCCGTGGTAAAGGAAGGAAGGAGAAAGTTGATGCCCGTTGAGGTCAGACACTaGCACTGTTATGGTGTGCTG | + |
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Preference number: 5 (lower is better) Translates to: SYLDFHPVVKEGRRKLMPVEVRH*HCYGVL Trigger: CAGCACACCATAACAGTGCAAGTGTCTGACCTCAAC...GGGCATCAACTTTCTCCTTCCTTCCTTTACCACGGGGTGGAAGTCTAAGTATGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| CDS-3UTR CAA 90 bp | CATAACAATCTTTTGTATACATGGTGCTCACAACAGAACAGGGCACAACTTCTGTGCAGGGCAGGGCTGTaGTTCTCACGGACCGACATG | + |
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Preference number: 5 (lower is better) Translates to: HNNLLYTWCSQQNRAQLLCRAGL*FSRTDM Trigger: CATGTCGGTCCGTGAGAACAACAGCCCTGCCCTGCA...CAGAAGTTGTGCCCTGTTCTGTTGTGAGCACCATGTATACAAAAGATTGTTATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| CDS-3UTR CAA 90 bp | AGAGGAAGCAAAGAGATCCCAAGAAAATACAGTCTGTCATCATACTTAGACTTCCCGGGCTCTGTGGACTaGAGCAGCTGGAATGACAGC | + |
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Preference number: 5 (lower is better) Translates to: RGSKEIPRKYSLSSYLDFPGSVD*SSWNDS Trigger: GCTGTCATTCCAGCTGCTCAAGTCCACAGAGCCCGG...GAAGTCTAAGTATGATGACAGACTGTATTTTCTTGGGATCTCTTTGCTTCCTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| CDS-3UTR CAA 90 bp | GATGCCCTCAAGAGTCCTCAACTAACTTACAAGGAGTTGCTTCATAATTCTGCTCCCTTTGGAGATAGCTaGAGCTCTCCTTTCAGCCAG | + |
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Preference number: 5 (lower is better) Translates to: DALKSPQLTYKELLHNSAPFGDS*SSPFSQ Trigger: CTGGCTGAAAGGAGAGCTCAAGCTATCTCCAAAGGG...AGCAGAATTATGAAGCAACTCCTTGTAAGTTAGTTGAGGACTCTTGAGGGCATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| CDS-3UTR CAA 90 bp | CATAACAATCTTTTGTATACATGGTGCTCACAACAGAACAGGGCACAACTTCTGGGATCCCCATTGTCCTaGACCAGTAGCAGCAGCTTT | + |
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Preference number: 5 (lower is better) Translates to: HNNLLYTWCSQQNRAQLLGSPLS*TSSSSF Trigger: AAAGCTGCTGCTACTGGTCAAGGACAATGGGGATCC...CAGAAGTTGTGCCCTGTTCTGTTGTGAGCACCATGTATACAAAAGATTGTTATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| CDS-3UTR CAA 90 bp | CATAACAATCTTTTGTATACATGGTGCTCACAACAGAACAGGGCACAACTTCTGTGCCCGTTGTCAGCATaGATGGAGATGAGTGAATCG | + |
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Preference number: 5 (lower is better) Translates to: HNNLLYTWCSQQNRAQLLCPLSA*MEMSES Trigger: CGATTCACTCATCTCCATCAATGCTGACAACGGGCA...CAGAAGTTGTGCCCTGTTCTGTTGTGAGCACCATGTATACAAAAGATTGTTATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| CDS-3UTR CAA 90 bp | GATGCCCTCAAGAGTCCTCAACTAACTTACAAGGAGTTGCTTCATAATTCTGCTGGACTTTCAGCTGCATaGCATTTTCAAAGAACTCCG | + |
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Preference number: 5 (lower is better) Translates to: DALKSPQLTYKELLHNSAGLSAA*HFQRTP Trigger: CGGAGTTCTTTGAAAATGCAATGCAGCTGAAAGTCC...AGCAGAATTATGAAGCAACTCCTTGTAAGTTAGTTGAGGACTCTTGAGGGCATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| CDS-3UTR CAA 90 bp | ATTCTACTTATAAATTACATGGCAGCTTTATTAGACCTGCAGAACATGACAAGCAGCAGCAGCTTTTGCTaGAGCATATCGCGCTCACTC | + |
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Preference number: 5 (lower is better) Translates to: ILLINYMAALLDLQNMTSSSSFC*SISRSL Trigger: GAGTGAGCGCGATATGCTCAAGCAAAAGCTGCTGCT...GCTTGTCATGTTCTGCAGGTCTAATAAAGCTGCCATGTAATTTATAAGTAGAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| CDS-3UTR CAA 90 bp | GTAAAGACATTCATTTCATTAACTGTTAGGATAATCATCGCTCAGACATGCCTAACCGGATTCAGGAGTTaGAACTCACCAGTCCCAGCA | + |
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Preference number: 5 (lower is better) Translates to: VKTFISLTVRIIIAQTCLTGFRS*NSPVPA Trigger: TGCTGGGACTGGTGAGTTCAAACTCCTGAATCCGGT...TAGGCATGTCTGAGCGATGATTATCCTAACAGTTAATGAAATGAATGTCTTTAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| CDS-3UTR CAA 90 bp | ATTCTACTTATAAATTACATGGCAGCTTTATTAGACCTGCAGAACATGACAAGCCTGGGGCATTATCATTaGTGTCTAAGACCAGGATGT | + |
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Preference number: 5 (lower is better) Translates to: ILLINYMAALLDLQNMTSLGHYH*CLRPGC Trigger: ACATCCTGGTCTTAGACACAAATGATAATGCCCCAG...GCTTGTCATGTTCTGCAGGTCTAATAAAGCTGCCATGTAATTTATAAGTAGAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| CDS-3UTR CAA 90 bp | ATTCTACTTATAAATTACATGGCAGCTTTATTAGACCTGCAGAACATGACAAGCAAAGAGAAGCAAGACTaGCCTTTGTTTAAGAAAGCT | + |
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Preference number: 5 (lower is better) Translates to: ILLINYMAALLDLQNMTSKEKQD*PLFKKA Trigger: AGCTTTCTTAAACAAAGGCAAGTCTTGCTTCTCTTT...GCTTGTCATGTTCTGCAGGTCTAATAAAGCTGCCATGTAATTTATAAGTAGAAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| CDS CAA 72 bp | AGCGCCCTGAGTGCAAACAGCTGCCCGTTGTCAGCATaGATGGAGATGAGTGAATCGAGGGCCAGCTGTGGG | + |
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Preference number: 6 (lower is better) Translates to: SALSANSCPLSA*MEMSESRASCG Trigger: CCCACAGCTGGCCCTCGATTCACTCATCTCCATCAATGCTGACAACGGGCAGCTGTTTGCACTCAGGGCGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| CDS CCA 72 bp | GCATTATCATTTGTGTCTAAGACCAGGATGTGGACCTaGGTAGTTCCAGAACGAGGCGGGGATCCTCCATCC | + |
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Preference number: 6 (lower is better) Translates to: ALSFVSKTRMWT*VVPERGGDPPS Trigger: GGATGGAGGATCCCCGCCTCGTTCTGGAACTACCCAGGTCCACATCCTGGTCTTAGACACAAATGATAATGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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| CDS GCA 72 bp | TGTCTAGAACTAGCTCTGGATACTTTCTTCCATCCCTaGGACGGCGGGTGTGAACATGAAAATGAGACGTGG | + |
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Preference number: 6 (lower is better) Translates to: CLELALDTFFHP*DGGCEHENETW Trigger: CCACGTCTCATTTTCATGTTCACACCCGCCGTCGCAGGGATGGAAGAAAGTATCCAGAGCTAGTTCTAGACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051754.2 |
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