Pregenerated sensors for PCDHB21 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044022Ensembl transcript IDs: ENSMUST00000061405.6
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | CTTAGCCTGCAGCGCCACCATGCGTTGACTATGCTCTTCAACAGATaGCAGCATGGTTCCATTCTTTTTACAGTCTATTTGGTTGTCAGA | + |
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Preference number: 2 (lower is better) Translates to: LSLQRHHALTMLFNR*QHGSILFTVYLVVR Trigger: TCTGACAACCAAATAGACTGTAAAAAGAATGGAACCATGCTGCAATCTGTTGAAGAGCATAGTCAACGCATGGTGGCGCTGCAGGCTAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| 3UTR-3UTR TCA 90 bp | TTATTACGTCTTAGTTCTCTGTCCCCAGTTCCCAACCCAATAGTGAAAGTCGTGATCCCATATCTATGCTaGAGAGAGACATTTTCAGAA | + |
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Preference number: 2 (lower is better) Translates to: LLRLSSLSPVPNPIVKVVIPYLC*RETFSE Trigger: TTCTGAAAATGTCTCTCTTCAGCATAGATATGGGAT...CACGACTTTCACTATTGGGTTGGGAACTGGGGACAGAGAACTAAGACGTAATAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| 3UTR CAA 90 bp | AACTGTCTTTTTATCAAAGGAAAAATACTAAGGCTTGTCAAGACCTaGCCTCAGCCTCCTGAGACTACCACTACTCCTATCTTCAAATTT | + |
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Preference number: 2 (lower is better) Translates to: NCLFIKGKILRLVKT*PQPPETTTTPIFKF Trigger: AAATTTGAAGATAGGAGTAGTGGTAGTCTCAGGAGGCTGAGGCAAGGTCTTGACAAGCCTTAGTATTTTTCCTTTGATAAAAAGACAGTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| 3UTR-3UTR TCA 90 bp | CTTTGTAATTTTATGTCTCTTAGGTACCAAAATTGTGGTTCCAGTTGGTTGGGTCATTTTCAGAAAATGTaGGGTGGGCTAGATAGATGT | + |
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Preference number: 2 (lower is better) Translates to: LCNFMSLRYQNCGSSWLGHFQKM*GGLDRC Trigger: ACATCTATCTAGCCCACCTCACATTTTCTGAAAATG...ACCCAACCAACTGGAACCACAATTTTGGTACCTAAGAGACATAAAATTACAAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| 3UTR CAA 90 bp | AAAAAGAACCAGTGTACATCAGGAACCATGATGAGAGTCAACAAATaGCTAATTGTATCCAAACTGATTCATAGAGGAGGTGTTTTCTTT | + |
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Preference number: 2 (lower is better) Translates to: KKNQCTSGTMMRVNK*LIVSKLIHRGGVFF Trigger: AAAGAAAACACCTCCTCTATGAATCAGTTTGGATACAATTAGCAATTTGTTGACTCTCATCATGGTTCCTGATGTACACTGGTTCTTTTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| 3UTR-3UTR CAA 90 bp | TTATTACGTCTTAGTTCTCTGTCCCCAGTTCCCAACCCAATAGTGAAAGTCGTGTCATCTCCCGGAGGTTaGACATTTGATAGGACACCG | + |
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Preference number: 3 (lower is better) Translates to: LLRLSSLSPVPNPIVKVVSSPGG*TFDRTP Trigger: CGGTGTCCTATCAAATGTCAAACCTCCGGGAGATGA...CACGACTTTCACTATTGGGTTGGGAACTGGGGACAGAGAACTAAGACGTAATAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| 3UTR GCA 72 bp | AGTCGTGTCAAAATGAAGGTCCTCCACAAGGTTACTTaGTTGCTAAGTCTTTCCTTTCATCTCCCGGAGGTT | + |
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Preference number: 3 (lower is better) Translates to: SRVKMKVLHKVT*LLSLSFHLPEV Trigger: AACCTCCGGGAGATGAAAGGAAAGACTTAGCAAGCAAGTAACCTTGTGGAGGACCTTCATTTTGACACGACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| 3UTR TCA 72 bp | AATACTAAGGCTTGTCAAGACCTTGCCTCAGCCTCCTaGGACTACCACTACTCCTATCTTCAAATTTTTCCT | + |
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Preference number: 3 (lower is better) Translates to: NTKACQDLASAS*DYHYSYLQIFP Trigger: AGGAAAAATTTGAAGATAGGAGTAGTGGTAGTCTCAGGAGGCTGAGGCAAGGTCTTGACAAGCCTTAGTATT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| 3UTR-3UTR CAA 90 bp | TTATTACGTCTTAGTTCTCTGTCCCCAGTTCCCAACCCAATAGTGAAAGTCGTGCACAAGGTTACTTGCTaGCTAAGTCTTTCCTTTCAT | + |
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Preference number: 3 (lower is better) Translates to: LLRLSSLSPVPNPIVKVVHKVTC*LSLSFH Trigger: ATGAAAGGAAAGACTTAGCAAGCAAGTAACCTTGTG...CACGACTTTCACTATTGGGTTGGGAACTGGGGACAGAGAACTAAGACGTAATAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| 3UTR TCA 72 bp | CATATCTATGCTGAAGAGAGACATTTTCAGAAAATGTaGGGTGGGCTAGATAGATGTCATAGGAGCAATCTA | + |
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Preference number: 3 (lower is better) Translates to: HIYAEERHFQKM*GGLDRCHRSNL Trigger: TAGATTGCTCCTATGACATCTATCTAGCCCACCTCACATTTTCTGAAAATGTCTCTCTTCAGCATAGATATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS-3UTR TCA 90 bp | TTATTACGTCTTAGTTCTCTGTCCCCAGTTCCCAACCCAATAGTGAAAGTCGTGTGTGAGCCCACACGCTaGACAGCCCAGGCTCCGTGG | + |
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Preference number: 4 (lower is better) Translates to: LLRLSSLSPVPNPIVKVVCEPTR*TAQAPW Trigger: CCACGGAGCCTGGGCTGTTCAGCGTGTGGGCTCACA...CACGACTTTCACTATTGGGTTGGGAACTGGGGACAGAGAACTAAGACGTAATAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS-3UTR GCA 90 bp | CTATGCTCTTCAACAGATTGCAGCATGGTTCCATTCTTTTTACAGTCTATTTGGGTAGCCGGGCTCCGCTaGCCTGGGCAGCAGCTCTGT | + |
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Preference number: 4 (lower is better) Translates to: LCSSTDCSMVPFFLQSIWVAGLR*PGQQLC Trigger: ACAGAGCTGCTGCCCAGGGCAGCGGAGCCCGGCTAC...CCAAATAGACTGTAAAAAGAATGGAACCATGCTGCAATCTGTTGAAGAGCATAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS-3UTR TCA 90 bp | AAACTGAGCTTTGATCCCATATCTATGCTGAAGAGAGACATTTTCAGAAAATGTGGGTTCCCGCACCGCTaGCATCCACCAGGTGGCCGG | + |
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Preference number: 4 (lower is better) Translates to: KLSFDPISMLKRDIFRKCGFPHR*HPPGGR Trigger: CCGGCCACCTGGTGGATGTCAGCGGTGCGGGAACCC...ACATTTTCTGAAAATGTCTCTCTTCAGCATAGATATGGGATCAAAGCTCAGTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS-3UTR CCA 90 bp | GGAACCATGATGAGAGTCAACAAATTGCTAATTGTATCCAAACTGATTCATAGACGGGCTCCGCTGCCCTaGGCAGCAGCTCTGTGCAGG | + |
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Preference number: 4 (lower is better) Translates to: GTMMRVNKLLIVSKLIHRRAPLP*AAALCR Trigger: CCTGCACAGAGCTGCTGCCCAGGGCAGCGGAGCCCG...TCTATGAATCAGTTTGGATACAATTAGCAATTTGTTGACTCTCATCATGGTTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS-3UTR GCA 90 bp | AGCATTTATTACAAGGGCATTTATTACGTCTTAGTTCTCTGTCCCCAGTTCCCATCCACCACCAACAGGTaGAGCGTGACGCTGGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: SIYYKGIYYVLVLCPQFPSTTNR*SVTLAE Trigger: CTCTGCCAGCGTCACGCTGCACCTGTTGGTGGTGGA...TGGGAACTGGGGACAGAGAACTAAGACGTAATAAATGCCCTTGTAATAAATGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS-3UTR TCA 90 bp | TTATTACGTCTTAGTTCTCTGTCCCCAGTTCCCAACCCAATAGTGAAAGTCGTGACTTGCCTTATATGCTaGGCAGCTCCAACTCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: LLRLSSLSPVPNPIVKVVTCLIC*AAPTPG Trigger: GCCTGGAGTTGGAGCTGCTCAGCATATAAGGCAAGT...CACGACTTTCACTATTGGGTTGGGAACTGGGGACAGAGAACTAAGACGTAATAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS-3UTR TCA 90 bp | CTTTGTAATTTTATGTCTCTTAGGTACCAAAATTGTGGTTCCAGTTGGTTGGGTAACCAATACAGTCCCTaGCCTGGGCAGGGACCCACC | + |
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Preference number: 4 (lower is better) Translates to: LCNFMSLRYQNCGSSWLGNQYSP*PGQGPT Trigger: GGTGGGTCCCTGCCCAGGTCAGGGACTGTATTGGTT...ACCCAACCAACTGGAACCACAATTTTGGTACCTAAGAGACATAAAATTACAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS-3UTR TCA 90 bp | TTGTCAAGACCTTGCCTCAGCCTCCTGAGACTACCACTACTCCTATCTTCAAATCTTGGTCTCGTAAACTaGAAACAGCGACCACCATCT | + |
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Preference number: 4 (lower is better) Translates to: LSRPCLSLLRLPLLLSSNLGLVN*KQRPPS Trigger: AGATGGTGGTCGCTGTTTTCAGTTTACGAGACCAAG...ATTTGAAGATAGGAGTAGTGGTAGTCTCAGGAGGCTGAGGCAAGGTCTTGACAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS-3UTR TCA 90 bp | AAACTGAGCTTTGATCCCATATCTATGCTGAAGAGAGACATTTTCAGAAAATGTTGGTGTGCTGGGTTGTaGGCCTGGGTGTGCCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: KLSFDPISMLKRDIFRKCWCAGL*AWVCPG Trigger: ACCTGGGCACACCCAGGCTCACAACCCAGCACACCA...ACATTTTCTGAAAATGTCTCTCTTCAGCATAGATATGGGATCAAAGCTCAGTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS-3UTR GCA 90 bp | TTGTCAAGACCTTGCCTCAGCCTCCTGAGACTACCACTACTCCTATCTTCAAATGCTGCTAGAACAAAGTaGCTCCCTGTCCAGTTTTTC | + |
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Preference number: 4 (lower is better) Translates to: LSRPCLSLLRLPLLLSSNAARTK*LPVQFF Trigger: GAAAAACTGGACAGGGAGGCACTTTGTTCTAGCAGC...ATTTGAAGATAGGAGTAGTGGTAGTCTCAGGAGGCTGAGGCAAGGTCTTGACAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS-3UTR TCA 90 bp | TTATTACGTCTTAGTTCTCTGTCCCCAGTTCCCAACCCAATAGTGAAAGTCGTGCTGGACAATAATGGCTaGTTTTCCAGAGAGACCACC | + |
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Preference number: 4 (lower is better) Translates to: LLRLSSLSPVPNPIVKVVLDNNG*FSRETT Trigger: GGTGGTCTCTCTGGAAAATCAGCCATTATTGTCCAG...CACGACTTTCACTATTGGGTTGGGAACTGGGGACAGAGAACTAAGACGTAATAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS-3UTR GCA 90 bp | AAACTGAGCTTTGATCCCATATCTATGCTGAAGAGAGACATTTTCAGAAAATGTTGGGCAGCAGCTCTGTaGAGGGCGCAGAAGCGTTCT | + |
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Preference number: 4 (lower is better) Translates to: KLSFDPISMLKRDIFRKCWAAAL*RAQKRS Trigger: AGAACGCTTCTGCGCCCTGCACAGAGCTGCTGCCCA...ACATTTTCTGAAAATGTCTCTCTTCAGCATAGATATGGGATCAAAGCTCAGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS-3UTR GCA 90 bp | TTGTCAAGACCTTGCCTCAGCCTCCTGAGACTACCACTACTCCTATCTTCAAATAATAGCACCTGGAAATaGAATATACAGGGTTCGCTG | + |
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Preference number: 4 (lower is better) Translates to: LSRPCLSLLRLPLLLSSNNSTWK*NIQGSL Trigger: CAGCGAACCCTGTATATTGCATTTCCAGGTGCTATT...ATTTGAAGATAGGAGTAGTGGTAGTCTCAGGAGGCTGAGGCAAGGTCTTGACAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| 3UTR CAA 72 bp | CAGCGCCACCATGCGTTGACTATGCTCTTCAACAGATaGCAGCATGGTTCCATTCTTTTTACAGTCTATTTG | + |
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Preference number: 4 (lower is better) Translates to: QRHHALTMLFNR*QHGSILFTVYL Trigger: CAAATAGACTGTAAAAAGAATGGAACCATGCTGCAATCTGTTGAAGAGCATAGTCAACGCATGGTGGCGCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS-3UTR TCA 90 bp | CTTTGTAATTTTATGTCTCTTAGGTACCAAAATTGTGGTTCCAGTTGGTTGGGTCTGTCGCAGACACCTTaGTTACCAGTGAGTCCACAG | + |
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Preference number: 4 (lower is better) Translates to: LCNFMSLRYQNCGSSWLGLSQTP*LPVSPQ Trigger: CTGTGGACTCACTGGTAATCAAGGTGTCTGCGACAG...ACCCAACCAACTGGAACCACAATTTTGGTACCTAAGAGACATAAAATTACAAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS-3UTR TCA 90 bp | AAACTGAGCTTTGATCCCATATCTATGCTGAAGAGAGACATTTTCAGAAAATGTCAGGGGCGTTGTCGTTaGTGTCAGAGATGTGCACTG | + |
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Preference number: 4 (lower is better) Translates to: KLSFDPISMLKRDIFRKCQGRCR*CQRCAL Trigger: CAGTGCACATCTCTGACATCAACGACAACGCCCCTG...ACATTTTCTGAAAATGTCTCTCTTCAGCATAGATATGGGATCAAAGCTCAGTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS-3UTR CCA 90 bp | TTATTACGTCTTAGTTCTCTGTCCCCAGTTCCCAACCCAATAGTGAAAGTCGTGAGTCTCCATTTCTTCTaGCACAGAATATCTCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: LLRLSSLSPVPNPIVKVVSLHFF*HRISPG Trigger: ACCTGGAGATATTCTGTGCCAGAAGAAATGGAGACT...CACGACTTTCACTATTGGGTTGGGAACTGGGGACAGAGAACTAAGACGTAATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| 3UTR CAA 72 bp | TTTATCAAAGGAAAAATACTAAGGCTTGTCAAGACCTaGCCTCAGCCTCCTGAGACTACCACTACTCCTATC | + |
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Preference number: 4 (lower is better) Translates to: FIKGKILRLVKT*PQPPETTTTPI Trigger: GATAGGAGTAGTGGTAGTCTCAGGAGGCTGAGGCAAGGTCTTGACAAGCCTTAGTATTTTTCCTTTGATAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS-3UTR TCA 90 bp | TTATTACGTCTTAGTTCTCTGTCCCCAGTTCCCAACCCAATAGTGAAAGTCGTGCCTATATCTAAGTCCTaGGCATCATCCATTTGGAAT | + |
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Preference number: 4 (lower is better) Translates to: LLRLSSLSPVPNPIVKVVPISKS*ASSIWN Trigger: ATTCCAAATGGATGATGCTCAGGACTTAGATATAGG...CACGACTTTCACTATTGGGTTGGGAACTGGGGACAGAGAACTAAGACGTAATAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS-3UTR CCA 90 bp | AGCATTTATTACAAGGGCATTTATTACGTCTTAGTTCTCTGTCCCCAGTTCCCAGACTTCACCAGAGGTTaGGTGGATTTCGAATGTTTT | + |
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Preference number: 4 (lower is better) Translates to: SIYYKGIYYVLVLCPQFPDFTRG*VDFECF Trigger: AAAACATTCGAAATCCACCCAACCTCTGGTGAAGTC...TGGGAACTGGGGACAGAGAACTAAGACGTAATAAATGCCCTTGTAATAAATGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS-3UTR CCA 90 bp | TTATTACGTCTTAGTTCTCTGTCCCCAGTTCCCAACCCAATAGTGAAAGTCGTGTTCACATCTGTAACCTaGACAATAATGGCTGATTTT | + |
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Preference number: 4 (lower is better) Translates to: LLRLSSLSPVPNPIVKVVFTSVT*TIMADF Trigger: AAAATCAGCCATTATTGTCCAGGTTACAGATGTGAA...CACGACTTTCACTATTGGGTTGGGAACTGGGGACAGAGAACTAAGACGTAATAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS-3UTR CCA 90 bp | AGCATTTATTACAAGGGCATTTATTACGTCTTAGTTCTCTGTCCCCAGTTCCCAGGAACCGAATATCATTaGAATCTGACATTCCTGTCA | + |
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Preference number: 4 (lower is better) Translates to: SIYYKGIYYVLVLCPQFPGTEYH*NLTFLS Trigger: TGACAGGAATGTCAGATTCCAATGATATTCGGTTCC...TGGGAACTGGGGACAGAGAACTAAGACGTAATAAATGCCCTTGTAATAAATGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS-3UTR GCA 90 bp | AAACTGAGCTTTGATCCCATATCTATGCTGAAGAGAGACATTTTCAGAAAATGTTTGATGTCAGAGATGTaGACTGTTATGGTGTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: KLSFDPISMLKRDIFRKCLMSEM*TVMVCW Trigger: CCAGCACACCATAACAGTGCACATCTCTGACATCAA...ACATTTTCTGAAAATGTCTCTCTTCAGCATAGATATGGGATCAAAGCTCAGTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS-3UTR CCA 90 bp | CTTTGTAATTTTATGTCTCTTAGGTACCAAAATTGTGGTTCCAGTTGGTTGGGTAGGAACGTGGGGGTATaGTCATTTATGTCTTCAATC | + |
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Preference number: 4 (lower is better) Translates to: LCNFMSLRYQNCGSSWLGRNVGV*SFMSSI Trigger: GATTGAAGACATAAATGACCATACCCCCACGTTCCT...ACCCAACCAACTGGAACCACAATTTTGGTACCTAAGAGACATAAAATTACAAAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS-3UTR TCA 90 bp | CTTTGTAATTTTATGTCTCTTAGGTACCAAAATTGTGGTTCCAGTTGGTTGGGTAATATCATTGGAATCTaGCATTCCTGTCAGACACAC | + |
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Preference number: 4 (lower is better) Translates to: LCNFMSLRYQNCGSSWLGNIIGI*HSCQTH Trigger: GTGTGTCTGACAGGAATGTCAGATTCCAATGATATT...ACCCAACCAACTGGAACCACAATTTTGGTACCTAAGAGACATAAAATTACAAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS-3UTR CCA 90 bp | AAACTGAGCTTTGATCCCATATCTATGCTGAAGAGAGACATTTTCAGAAAATGTTGTAATGACTATTTCTaGTGGGTTGTCATTCACATC | + |
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Preference number: 4 (lower is better) Translates to: KLSFDPISMLKRDIFRKCCNDYF*WVVIHI Trigger: GATGTGAATGACAACCCACCAGAAATAGTCATTACA...ACATTTTCTGAAAATGTCTCTCTTCAGCATAGATATGGGATCAAAGCTCAGTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS-3UTR CCA 90 bp | GGAACCATGATGAGAGTCAACAAATTGCTAATTGTATCCAAACTGATTCATAGATTTTCTCCAGAGTCTTaGTCTCGTAAACTGAAAACA | + |
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Preference number: 4 (lower is better) Translates to: GTMMRVNKLLIVSKLIHRFSPES*SRKLKT Trigger: TGTTTTCAGTTTACGAGACCAAGACTCTGGAGAAAA...TCTATGAATCAGTTTGGATACAATTAGCAATTTGTTGACTCTCATCATGGTTCC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS-3UTR CCA 90 bp | GGAACCATGATGAGAGTCAACAAATTGCTAATTGTATCCAAACTGATTCATAGAGACCACCACCATCAATaGCTTGAATATTTATTGTAT | + |
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Preference number: 4 (lower is better) Translates to: GTMMRVNKLLIVSKLIHRDHHHQ*LEYLLY Trigger: ATACAATAAATATTCAAGCCATTGATGGTGGTGGTC...TCTATGAATCAGTTTGGATACAATTAGCAATTTGTTGACTCTCATCATGGTTCC 34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS-3UTR CAA 90 bp | CTATGCTCTTCAACAGATTGCAGCATGGTTCCATTCTTTTTACAGTCTATTTGGCATGGTGTAGGTGGTTaGGGTGAAGGCAGGGGCGTT | + |
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Preference number: 5 (lower is better) Translates to: LCSSTDCSMVPFFLQSIWHGVGG*GEGRGV Trigger: AACGCCCCTGCCTTCACCCAAACCACCTACACCATG...CCAAATAGACTGTAAAAAGAATGGAACCATGCTGCAATCTGTTGAAGAGCATAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS-3UTR CAA 90 bp | CTTTGTAATTTTATGTCTCTTAGGTACCAAAATTGTGGTTCCAGTTGGTTGGGTCGCGGAGGATCGCCATaGTCCTTGACTAGCAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: LCNFMSLRYQNCGSSWLGRGGSP*SLTSSS Trigger: GCTGCTGCTAGTCAAGGACAATGGCGATCCTCCGCG...ACCCAACCAACTGGAACCACAATTTTGGTACCTAAGAGACATAAAATTACAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS TCA 90 bp | ATTTATTCCCGAATCCAAATCTGTCGCAGACACCTTGATTACCAGTaGGTCCACAGAACTGTTCTCTGGTACTTGGACCTCATACAGGGT | + |
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Preference number: 5 (lower is better) Translates to: IYSRIQICRRHLDYQ*VHRTVLWYLDLIQG Trigger: ACCCTGTATGAGGTCCAAGTACCAGAGAACAGTTCTGTGGACTCACTGGTAATCAAGGTGTCTGCGACAGATTTGGATTCGGGAATAAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS CCA 90 bp | ATCTTTAATTATATTGGCTATAGAGGAGCCAGTCTCCATTTCTTCTaGCACAGAATATCTCCAGGTCGTGGCAAGAACCGAGGACCCTTC | + |
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Preference number: 5 (lower is better) Translates to: IFNYIGYRGASLHFF*HRISPGRGKNRGPF Trigger: GAAGGGTCCTCGGTTCTTGCCACGACCTGGAGATATTCTGTGCCAGAAGAAATGGAGACTGGCTCCTCTATAGCCAATATAATTAAAGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS-3UTR CAA 90 bp | CTATGCTCTTCAACAGATTGCAGCATGGTTCCATTCTTTTTACAGTCTATTTGGGCAGGGGCGTTGTCGTaGATGTCAGAGATGTGCACT | + |
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Preference number: 5 (lower is better) Translates to: LCSSTDCSMVPFFLQSIWAGALS*MSEMCT Trigger: AGTGCACATCTCTGACATCAACGACAACGCCCCTGC...CCAAATAGACTGTAAAAAGAATGGAACCATGCTGCAATCTGTTGAAGAGCATAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS-3UTR CAA 90 bp | AAACTGAGCTTTGATCCCATATCTATGCTGAAGAGAGACATTTTCAGAAAATGTTGCAGGGCTGGGCTGTaGTTCTCCCGGACGAACATG | + |
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Preference number: 5 (lower is better) Translates to: KLSFDPISMLKRDIFRKCCRAGL*FSRTNM Trigger: CATGTTCGTCCGGGAGAACAACAGCCCAGCCCTGCA...ACATTTTCTGAAAATGTCTCTCTTCAGCATAGATATGGGATCAAAGCTCAGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS-3UTR CAA 90 bp | CTTTGTAATTTTATGTCTCTTAGGTACCAAAATTGTGGTTCCAGTTGGTTGGGTCGCTTCCTCATCCACTaGGGTAGAGTCGTGCGCAAC | + |
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Preference number: 5 (lower is better) Translates to: LCNFMSLRYQNCGSSWLGRFLIH*GRVVRN Trigger: GTTGCGCACGACTCTACCCAAGTGGATGAGGAAGCG...ACCCAACCAACTGGAACCACAATTTTGGTACCTAAGAGACATAAAATTACAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS-3UTR CAA 90 bp | TTGTCAAGACCTTGCCTCAGCCTCCTGAGACTACCACTACTCCTATCTTCAAATTCATTCAAAAGCAAGTaGCCAGTCTCCAGTTCTAAC | + |
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Preference number: 5 (lower is better) Translates to: LSRPCLSLLRLPLLLSSNSFKSK*PVSSSN Trigger: GTTAGAACTGGAGACTGGCAACTTGCTTTTGAATGA...ATTTGAAGATAGGAGTAGTGGTAGTCTCAGGAGGCTGAGGCAAGGTCTTGACAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS-3UTR CAA 90 bp | AGAATGTTTAAAAAGAACCAGTGTACATCAGGAACCATGATGAGAGTCAACAAAAGGAACCGAATATCATaGGAATCTGACATTCCTGTC | + |
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Preference number: 5 (lower is better) Translates to: RMFKKNQCTSGTMMRVNKRNRIS*ESDIPV Trigger: GACAGGAATGTCAGATTCCAATGATATTCGGTTCCT...TTTGTTGACTCTCATCATGGTTCCTGATGTACACTGGTTCTTTTTAAACATTCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS-3UTR CAA 90 bp | AGAATGTTTAAAAAGAACCAGTGTACATCAGGAACCATGATGAGAGTCAACAAAAAGAGAAAAGGGAGTTaGTCTTCAATTGAACACATC | + |
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Preference number: 5 (lower is better) Translates to: RMFKKNQCTSGTMMRVNKKRKGS*SSIEHI Trigger: GATGTGTTCAATTGAAGACAAACTCCCTTTTCTCTT...TTTGTTGACTCTCATCATGGTTCCTGATGTACACTGGTTCTTTTTAAACATTCT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS TCA 72 bp | CCAGCCGCTGGTCTTGGGGTGGCAGCAGTGAGTAGGTaGTGTGGGCATTGGAGCCTAAATCTGAGTCTGTGG | + |
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Preference number: 6 (lower is better) Translates to: PAAGLGVAAVSR*CGHWSLNLSLW Trigger: CCACAGACTCAGATTTAGGCTCCAATGCCCACATCACCTACTCACTGCTGCCACCCCAAGACCAGCGGCTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS TCA 72 bp | CGAATCCAAATCTGTCGCAGACACCTTGATTACCAGTaGGTCCACAGAACTGTTCTCTGGTACTTGGACCTC | + |
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Preference number: 6 (lower is better) Translates to: RIQICRRHLDYQ*VHRTVLWYLDL Trigger: GAGGTCCAAGTACCAGAGAACAGTTCTGTGGACTCACTGGTAATCAAGGTGTCTGCGACAGATTTGGATTCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS CCA 72 bp | ATTACCAGTGAGTCCACAGAACTGTTCTCTGGTACTTaGACCTCATACAGGGTCCTTTCAAACTCAGGGGCA | + |
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Preference number: 6 (lower is better) Translates to: ITSESTELFSGT*TSYRVLSNSGA Trigger: TGCCCCTGAGTTTGAAAGGACCCTGTATGAGGTCCAAGTACCAGAGAACAGTTCTGTGGACTCACTGGTAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS CCA 72 bp | TATATTGGCTATAGAGGAGCCAGTCTCCATTTCTTCTaGCACAGAATATCTCCAGGTCGTGGCAAGAACCGA | + |
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Preference number: 6 (lower is better) Translates to: YIGYRGASLHFF*HRISPGRGKNR Trigger: TCGGTTCTTGCCACGACCTGGAGATATTCTGTGCCAGAAGAAATGGAGACTGGCTCCTCTATAGCCAATATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS TCA 72 bp | CATTTATTCCCGAATCCAAATCTGTCGCAGACACCTTaGTTACCAGTGAGTCCACAGAACTGTTCTCTGGTA | + |
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Preference number: 6 (lower is better) Translates to: HLFPNPNLSQTP*LPVSPQNCSLV Trigger: TACCAGAGAACAGTTCTGTGGACTCACTGGTAATCAAGGTGTCTGCGACAGATTTGGATTCGGGAATAAATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS TCA 72 bp | GTTGTCATTCACATCTGTAACCTGGACAATAATGGCTaGTTTTCCAGAGAGACCACCACCATCAATGGCTTG | + |
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Preference number: 6 (lower is better) Translates to: VVIHICNLDNNG*FSRETTTINGL Trigger: CAAGCCATTGATGGTGGTGGTCTCTCTGGAAAATCAGCCATTATTGTCCAGGTTACAGATGTGAATGACAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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| CDS CAA 72 bp | GACTTCACCAGAGGTTGGGTGGATTTCGAATGTTTTTaGTACATCTCTAGAGATATGAGAAAACGAATAAGA | + |
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Preference number: 6 (lower is better) Translates to: DFTRGWVDFECF*YISRDMRKRIR Trigger: TCTTATTCGTTTTCTCATATCTCTAGAGATGTACAAAAAACATTCGAAATCCACCCAACCTCTGGTGAAGTC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061405.6 |
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