Pregenerated sensors for PCDHB20 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000046191Ensembl transcript IDs: ENSMUST00000052179.8
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCCTCCATGTCTTTTGTTGTAGATCCATCCGGGGCTGCCTGCTTATaGACTCCACCCAGTATTATATTAGTCAGCAGCTCAACACATCGA | + |
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Preference number: 1 (lower is better) Translates to: PSMSFVVDPSGAACL*TPPSIILVSSSTHR Trigger: TCGATGTGTTGAGCTGCTGACTAATATAATACTGGGTGGAGTCCATAAGCAGGCAGCCCCGGATGGATCTACAACAAAAGACATGGAGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| 3UTR TCA 90 bp | TGGGCAAATCATAGTACTGGGGAGGGAGAGGCAGCTGGATCTTTGTaGATCAACAGAGTTAATTCTAGGAAAGCCAGGGCTACACATAAA | + |
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Preference number: 1 (lower is better) Translates to: WANHSTGEGEAAGSL*INRVNSRKARATHK Trigger: TTTATGTGTAGCCCTGGCTTTCCTAGAATTAACTCTGTTGATTCACAAAGATCCAGCTGCCTCTCCCTCCCCAGTACTATGATTTGCCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| 3UTR-3UTR TCA 90 bp | GCTGTGTCTTATATAAGAAACAGCAGAACCGTTAACATAACACCTCGGCAAAATTGTGAGAAAAACACGTaGAACAAAAATGCATGCATC | + |
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Preference number: 2 (lower is better) Translates to: AVSYIRNSRTVNITPRQNCEKNT*NKNACI Trigger: GATGCATGCATTTTTGTTTCACGTGTTTTTCTCACA...ATTTTGCCGAGGTGTTATGTTAACGGTTCTGCTGTTTCTTATATAAGACACAGC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| 3UTR TCA 72 bp | CATAGTACTGGGGAGGGAGAGGCAGCTGGATCTTTGTaGATCAACAGAGTTAATTCTAGGAAAGCCAGGGCT | + |
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Preference number: 3 (lower is better) Translates to: HSTGEGEAAGSL*INRVNSRKARA Trigger: AGCCCTGGCTTTCCTAGAATTAACTCTGTTGATTCACAAAGATCCAGCTGCCTCTCCCTCCCCAGTACTATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| 3UTR GCA 72 bp | TCCATGTCTTTTGTTGTAGATCCATCCGGGGCTGCCTaGTTATGGACTCCACCCAGTATTATATTAGTCAGC | + |
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Preference number: 3 (lower is better) Translates to: SMSFVVDPSGAA*LWTPPSIILVS Trigger: GCTGACTAATATAATACTGGGTGGAGTCCATAAGCAGGCAGCCCCGGATGGATCTACAACAAAAGACATGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| 3UTR CCA 72 bp | TCTTTTGTTGTAGATCCATCCGGGGCTGCCTGCTTATaGACTCCACCCAGTATTATATTAGTCAGCAGCTCA | + |
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Preference number: 3 (lower is better) Translates to: SFVVDPSGAACL*TPPSIILVSSS Trigger: TGAGCTGCTGACTAATATAATACTGGGTGGAGTCCATAAGCAGGCAGCCCCGGATGGATCTACAACAAAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| 3UTR-3UTR CAA 90 bp | GCTGTGTCTTATATAAGAAACAGCAGAACCGTTAACATAACACCTCGGCAAAATGTGCAGATAGTTTCTTaGCATCACTATAAACCCAGT | + |
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Preference number: 3 (lower is better) Translates to: AVSYIRNSRTVNITPRQNVQIVS*HHYKPS Trigger: ACTGGGTTTATAGTGATGCAAAGAAACTATCTGCAC...ATTTTGCCGAGGTGTTATGTTAACGGTTCTGCTGTTTCTTATATAAGACACAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| CDS-3UTR CCA 90 bp | GCTGTGTCTTATATAAGAAACAGCAGAACCGTTAACATAACACCTCGGCAAAATCTACCCTGGCCTCCCTaGAGGACAGCTCCGCAACCC | + |
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Preference number: 4 (lower is better) Translates to: AVSYIRNSRTVNITPRQNLPWPP*RTAPQP Trigger: GGGTTGCGGAGCTGTCCTCCAGGGAGGCCAGGGTAG...ATTTTGCCGAGGTGTTATGTTAACGGTTCTGCTGTTTCTTATATAAGACACAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| CDS-3UTR CCA 90 bp | GCTGTGTCTTATATAAGAAACAGCAGAACCGTTAACATAACACCTCGGCAAAATACGCGCACCAGAGTCTaGCTGCTGAGTGCGGGCGAG | + |
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Preference number: 4 (lower is better) Translates to: AVSYIRNSRTVNITPRQNTRTRV*LLSAGE Trigger: CTCGCCCGCACTCAGCAGCCAGACTCTGGTGCGCGT...ATTTTGCCGAGGTGTTATGTTAACGGTTCTGCTGTTTCTTATATAAGACACAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| CDS-3UTR CCA 90 bp | GCTGTGTCTTATATAAGAAACAGCAGAACCGTTAACATAACACCTCGGCAAAATCCAGAGAGGCAGCCCTaGCCCTCCTGCACAGCCTCA | + |
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Preference number: 4 (lower is better) Translates to: AVSYIRNSRTVNITPRQNPERQP*PSCTAS Trigger: TGAGGCTGTGCAGGAGGGCCAGGGCTGCCTCTCTGG...ATTTTGCCGAGGTGTTATGTTAACGGTTCTGCTGTTTCTTATATAAGACACAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| CDS-3UTR GCA 90 bp | GCTGTGTCTTATATAAGAAACAGCAGAACCGTTAACATAACACCTCGGCAAAATCAGGTAGCCAGGTTCTaGCACCCTGGGCAGCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: AVSYIRNSRTVNITPRQNQVARF*HPGQQL Trigger: GAGCTGCTGCCCAGGGTGGCAGAACCTGGCTACCTG...ATTTTGCCGAGGTGTTATGTTAACGGTTCTGCTGTTTCTTATATAAGACACAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| CDS-3UTR TCA 90 bp | GCTGTGTCTTATATAAGAAACAGCAGAACCGTTAACATAACACCTCGGCAAAATTCAGGGTCATGGAGCTaGAGACTGGGCATGACCGGC | + |
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Preference number: 4 (lower is better) Translates to: AVSYIRNSRTVNITPRQNSGSWS*RLGMTG Trigger: GCCGGTCATGCCCAGTCTTCAGCTCCATGACCCTGA...ATTTTGCCGAGGTGTTATGTTAACGGTTCTGCTGTTTCTTATATAAGACACAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| CDS-3UTR CCA 90 bp | GCTGTGTCTTATATAAGAAACAGCAGAACCGTTAACATAACACCTCGGCAAAATCATCTGACACTACCCTaGCCTCCCTGGAGGACAGCT | + |
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Preference number: 4 (lower is better) Translates to: AVSYIRNSRTVNITPRQNHLTLP*PPWRTA Trigger: AGCTGTCCTCCAGGGAGGCCAGGGTAGTGTCAGATG...ATTTTGCCGAGGTGTTATGTTAACGGTTCTGCTGTTTCTTATATAAGACACAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| CDS-3UTR TCA 90 bp | GCTGTGTCTTATATAAGAAACAGCAGAACCGTTAACATAACACCTCGGCAAAATCTTTGTCTGTGGCACTaGTGGTGCCTATGTGCAGGG | + |
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Preference number: 4 (lower is better) Translates to: AVSYIRNSRTVNITPRQNLCLWH*WCLCAG Trigger: CCCTGCACATAGGCACCATCAGTGCCACAGACAAAG...ATTTTGCCGAGGTGTTATGTTAACGGTTCTGCTGTTTCTTATATAAGACACAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| CDS-3UTR TCA 90 bp | GCTGTGTCTTATATAAGAAACAGCAGAACCGTTAACATAACACCTCGGCAAAATAGCGACCAGGGTCTCTaGAGCATTTTCTGGAATTGC | + |
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Preference number: 4 (lower is better) Translates to: AVSYIRNSRTVNITPRQNSDQGL*SIFWNC Trigger: GCAATTCCAGAAAATGCTTCAGAGACCCTGGTCGCT...ATTTTGCCGAGGTGTTATGTTAACGGTTCTGCTGTTTCTTATATAAGACACAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| CDS-3UTR TCA 90 bp | GCTGTGTCTTATATAAGAAACAGCAGAACCGTTAACATAACACCTCGGCAAAATCCGGGGCATTGTCATTaGTGTCAGATACCTGTACTC | + |
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Preference number: 4 (lower is better) Translates to: AVSYIRNSRTVNITPRQNPGHCH*CQIPVL Trigger: GAGTACAGGTATCTGACATCAATGACAATGCCCCGG...ATTTTGCCGAGGTGTTATGTTAACGGTTCTGCTGTTTCTTATATAAGACACAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| CDS-3UTR GCA 90 bp | GCTGTGTCTTATATAAGAAACAGCAGAACCGTTAACATAACACCTCGGCAAAATAAGACTTGCCTTTTCTaGAGGATGAGAGCCCTTCTC | + |
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Preference number: 4 (lower is better) Translates to: AVSYIRNSRTVNITPRQNKTCLF*RMRALL Trigger: GAGAAGGGCTCTCATCCTGCAGAAAAGGCAAGTCTT...ATTTTGCCGAGGTGTTATGTTAACGGTTCTGCTGTTTCTTATATAAGACACAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| CDS-3UTR CCA 90 bp | GCTGTGTCTTATATAAGAAACAGCAGAACCGTTAACATAACACCTCGGCAAAATAATAGGCATGTCCTCTaGGACCTGCACCTCATAGAA | + |
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Preference number: 4 (lower is better) Translates to: AVSYIRNSRTVNITPRQNNRHVL*DLHLIE Trigger: TTCTATGAGGTGCAGGTCCCAGAGGACATGCCTATT...ATTTTGCCGAGGTGTTATGTTAACGGTTCTGCTGTTTCTTATATAAGACACAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| CDS-3UTR TCA 90 bp | GCTGTGTCTTATATAAGAAACAGCAGAACCGTTAACATAACACCTCGGCAAAATTTGTCTCCAGAGTCTTaGTCTCGGACACTGAATAGA | + |
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Preference number: 4 (lower is better) Translates to: AVSYIRNSRTVNITPRQNLSPES*SRTLNR Trigger: TCTATTCAGTGTCCGAGATCAAGACTCTGGAGACAA...ATTTTGCCGAGGTGTTATGTTAACGGTTCTGCTGTTTCTTATATAAGACACAGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| CDS-3UTR GCA 90 bp | GCTGTGTCTTATATAAGAAACAGCAGAACCGTTAACATAACACCTCGGCAAAATCGAAAGAGTGCATTTTaGAGAAAGACCTCCACCATC | + |
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Preference number: 4 (lower is better) Translates to: AVSYIRNSRTVNITPRQNRKSAF*RKTSTI Trigger: GATGGTGGAGGTCTTTCTGCAAAATGCACTCTTTCG...ATTTTGCCGAGGTGTTATGTTAACGGTTCTGCTGTTTCTTATATAAGACACAGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| CDS-3UTR TCA 90 bp | GCTGTGTCTTATATAAGAAACAGCAGAACCGTTAACATAACACCTCGGCAAAATTGTCCAAGACTTTTATaGCAATCAGTGTTGTCCCAG | + |
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Preference number: 4 (lower is better) Translates to: AVSYIRNSRTVNITPRQNCPRLL*QSVLSQ Trigger: CTGGGACAACACTGATTGTCATAAAAGTCTTGGACA...ATTTTGCCGAGGTGTTATGTTAACGGTTCTGCTGTTTCTTATATAAGACACAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| CDS-3UTR TCA 90 bp | GCTGTGTCTTATATAAGAAACAGCAGAACCGTTAACATAACACCTCGGCAAAATTTAGTGATCTCAAATTaGCTTCCCCAGATGTTGGGT | + |
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Preference number: 4 (lower is better) Translates to: AVSYIRNSRTVNITPRQNLVISN*LPQMLG Trigger: ACCCAACATCTGGGGAAGTCAATTTGAGATCACTAA...ATTTTGCCGAGGTGTTATGTTAACGGTTCTGCTGTTTCTTATATAAGACACAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| CDS-3UTR TCA 90 bp | GCTGTGTCTTATATAAGAAACAGCAGAACCGTTAACATAACACCTCGGCAAAATAATGGAAGGTCATCCTaGATAGAGCAAAGGATCCTT | + |
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Preference number: 4 (lower is better) Translates to: AVSYIRNSRTVNITPRQNNGRSS*IEQRIL Trigger: AAGGATCCTTTGCTCTATTCAGGATGACCTTCCATT...ATTTTGCCGAGGTGTTATGTTAACGGTTCTGCTGTTTCTTATATAAGACACAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| CDS-3UTR GCA 90 bp | GCTGTGTCTTATATAAGAAACAGCAGAACCGTTAACATAACACCTCGGCAAAATAAGAAAACCAAGACTTaGCTTTTCTGCAGGATGAGA | + |
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Preference number: 4 (lower is better) Translates to: AVSYIRNSRTVNITPRQNKKTKT*LFCRMR Trigger: TCTCATCCTGCAGAAAAGGCAAGTCTTGGTTTTCTT...ATTTTGCCGAGGTGTTATGTTAACGGTTCTGCTGTTTCTTATATAAGACACAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| CDS-3UTR GCA 90 bp | GCTGTGTCTTATATAAGAAACAGCAGAACCGTTAACATAACACCTCGGCAAAATAGCATTTTCTGGAATTaGCTTTGTAACCGACGACAT | + |
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Preference number: 4 (lower is better) Translates to: AVSYIRNSRTVNITPRQNSIFWN*LCNRRH Trigger: ATGTCGTCGGTTACAAAGGCAATTCCAGAAAATGCT...ATTTTGCCGAGGTGTTATGTTAACGGTTCTGCTGTTTCTTATATAAGACACAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| CDS-3UTR CCA 90 bp | GCTGTGTCTTATATAAGAAACAGCAGAACCGTTAACATAACACCTCGGCAAAATGACTTCCCCAGATGTTaGGTTGATTTCAAAGGTTTT | + |
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Preference number: 4 (lower is better) Translates to: AVSYIRNSRTVNITPRQNDFPRC*VDFKGF Trigger: AAAACCTTTGAAATCAACCCAACATCTGGGGAAGTC...ATTTTGCCGAGGTGTTATGTTAACGGTTCTGCTGTTTCTTATATAAGACACAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| CDS-3UTR GCA 90 bp | GCTGTGTCTTATATAAGAAACAGCAGAACCGTTAACATAACACCTCGGCAAAATAATTTCTGTTTCCTCTaGTACAGAATAGCGCAAAGA | + |
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Preference number: 4 (lower is better) Translates to: AVSYIRNSRTVNITPRQNNFCFL*YRIAQR Trigger: TCTTTGCGCTATTCTGTAGCAGAGGAAACAGAAATT...ATTTTGCCGAGGTGTTATGTTAACGGTTCTGCTGTTTCTTATATAAGACACAGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| CDS-3UTR CCA 90 bp | GCTGTGTCTTATATAAGAAACAGCAGAACCGTTAACATAACACCTCGGCAAAATCGACATGATCACTTCTaGTGCATTGTCATTTATATC | + |
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Preference number: 4 (lower is better) Translates to: AVSYIRNSRTVNITPRQNRHDHF*CIVIYI Trigger: GATATAAATGACAATGCACCAGAAGTGATCATGTCG...ATTTTGCCGAGGTGTTATGTTAACGGTTCTGCTGTTTCTTATATAAGACACAGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| CDS-3UTR CAA 90 bp | GCTGTGTCTTATATAAGAAACAGCAGAACCGTTAACATAACACCTCGGCAAAATTTGGAGCCTGAGTCTTaGTCTGTGGCACTGATGGTG | + |
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Preference number: 5 (lower is better) Translates to: AVSYIRNSRTVNITPRQNLEPES*SVALMV Trigger: CACCATCAGTGCCACAGACAAAGACTCAGGCTCCAA...ATTTTGCCGAGGTGTTATGTTAACGGTTCTGCTGTTTCTTATATAAGACACAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| CDS-3UTR CAA 90 bp | GCTGTGTCTTATATAAGAAACAGCAGAACCGTTAACATAACACCTCGGCAAAATAAAGAAAACCAAGACTaGCCTTTTCTGCAGGATGAG | + |
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Preference number: 5 (lower is better) Translates to: AVSYIRNSRTVNITPRQNKENQD*PFLQDE Trigger: CTCATCCTGCAGAAAAGGCAAGTCTTGGTTTTCTTT...ATTTTGCCGAGGTGTTATGTTAACGGTTCTGCTGTTTCTTATATAAGACACAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| CDS-3UTR CAA 90 bp | GCTGTGTCTTATATAAGAAACAGCAGAACCGTTAACATAACACCTCGGCAAAATATTAGTGATCTCAAATaGACTTCCCCAGATGTTGGG | + |
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Preference number: 5 (lower is better) Translates to: AVSYIRNSRTVNITPRQNISDLK*TSPDVG Trigger: CCCAACATCTGGGGAAGTCAATTTGAGATCACTAAT...ATTTTGCCGAGGTGTTATGTTAACGGTTCTGCTGTTTCTTATATAAGACACAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| CDS-3UTR CAA 90 bp | GCTGTGTCTTATATAAGAAACAGCAGAACCGTTAACATAACACCTCGGCAAAATTCTGGAGCATTATCGTaGATGTCCAAGACTTTTATG | + |
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Preference number: 5 (lower is better) Translates to: AVSYIRNSRTVNITPRQNSGALS*MSKTFM Trigger: CATAAAAGTCTTGGACATCAACGATAATGCTCCAGA...ATTTTGCCGAGGTGTTATGTTAACGGTTCTGCTGTTTCTTATATAAGACACAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| CDS-3UTR CAA 90 bp | GCTGTGTCTTATATAAGAAACAGCAGAACCGTTAACATAACACCTCGGCAAAATTCCCCAGATGTTGGGTaGATTTCAAAGGTTTTTCTA | + |
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Preference number: 5 (lower is better) Translates to: AVSYIRNSRTVNITPRQNSPDVG*ISKVFL Trigger: TAGAAAAACCTTTGAAATCAACCCAACATCTGGGGA...ATTTTGCCGAGGTGTTATGTTAACGGTTCTGCTGTTTCTTATATAAGACACAGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| CDS-3UTR CAA 90 bp | GCTGTGTCTTATATAAGAAACAGCAGAACCGTTAACATAACACCTCGGCAAAATTCCACCATCTGTTGCTaGGATATTTACAGAATAGGA | + |
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Preference number: 5 (lower is better) Translates to: AVSYIRNSRTVNITPRQNSTICC*DIYRIG Trigger: TCCTATTCTGTAAATATCCAAGCAACAGATGGTGGA...ATTTTGCCGAGGTGTTATGTTAACGGTTCTGCTGTTTCTTATATAAGACACAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| CDS-3UTR CAA 90 bp | GCTGTGTCTTATATAAGAAACAGCAGAACCGTTAACATAACACCTCGGCAAAATTTAATAGTTATTTCCTaGTCTAGGAATGTAGGGGAG | + |
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Preference number: 5 (lower is better) Translates to: AVSYIRNSRTVNITPRQNLIVIS*SRNVGE Trigger: CTCCCCTACATTCCTAGACAAGGAAATAACTATTAA...ATTTTGCCGAGGTGTTATGTTAACGGTTCTGCTGTTTCTTATATAAGACACAGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| CDS GCA 72 bp | GGTAGCCAGGTTCTGCCACCCTGGGCAGCAGCTCAGTaGAAGGCGCAGAGGCGTTCTGCATCGGGTAGAGCA | + |
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Preference number: 6 (lower is better) Translates to: GSQVLPPWAAAQ*KAQRRSASGRA Trigger: TGCTCTACCCGATGCAGAACGCCTCTGCGCCTTGCACTGAGCTGCTGCCCAGGGTGGCAGAACCTGGCTACC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| CDS CAA 72 bp | GCTGAGTGCGGGCGAGCCTCGGTCTGTCGCACCCACTaGGAACTCGAAGGCCTGCAGGACCTCATAGTCCAG | + |
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Preference number: 6 (lower is better) Translates to: AECGRASVCRTH*ELEGLQDLIVQ Trigger: CTGGACTATGAGGTCCTGCAGGCCTTCGAGTTCCAAGTGGGTGCGACAGACCGAGGCTCGCCCGCACTCAGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| CDS CCA 72 bp | GCTTTTTATTATCATCTGACACTACCCTGGCCTCCCTaGAGGACAGCTCCGCAACCCCCAGTCCTAAATCCT | + |
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Preference number: 6 (lower is better) Translates to: AFYYHLTLPWPP*RTAPQPPVLNP Trigger: AGGATTTAGGACTGGGGGTTGCGGAGCTGTCCTCCAGGGAGGCCAGGGTAGTGTCAGATGATAATAAAAAGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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| CDS TCA 72 bp | TCCTTTTCCAGCATATTAGAATCAGGGTCATGGAGCTaGAGACTGGGCATGACCGGCCTAAGGAATTTGAAC | + |
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Preference number: 6 (lower is better) Translates to: SFSSILESGSWS*RLGMTGLRNLN Trigger: GTTCAAATTCCTTAGGCCGGTCATGCCCAGTCTTCAGCTCCATGACCCTGATTCTAATATGCTGGAAAAGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052179.8 |
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