Pregenerated sensors for PCDHB2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000051599Ensembl transcript IDs: ENSMUST00000056522.5
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | ACTTTCAAAGAAGAGACAACTTCTGTTAACAAAGCAGTACAATCGGGCCAGGTTCGGGCTCTGCCGCCCTaGGCAGCAGCTCAGTGCAGG | + |
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Preference number: 4 (lower is better) Translates to: TFKEETTSVNKAVQSGQVRALPP*AAAQCR Trigger: CCTGCACTGAGCTGCTGCCCAGGGCGGCAGAGCCCG...AACCTGGCCCGATTGTACTGCTTTGTTAACAGAAGTTGTCTCTTCTTTGAAAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS-3UTR CCA 90 bp | ACTTTCAAAGAAGAGACAACTTCTGTTAACAAAGCAGTACAATCGGGCCAGGTTAGCCACCCAGCGAGGTaGCTCTGGCCCTCCTGCACA | + |
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Preference number: 4 (lower is better) Translates to: TFKEETTSVNKAVQSGQVSHPAR*LWPSCT Trigger: TGTGCAGGAGGGCCAGAGCCACCTCGCTGGGTGGCT...AACCTGGCCCGATTGTACTGCTTTGTTAACAGAAGTTGTCTCTTCTTTGAAAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS-3UTR CCA 90 bp | ACTTTCAAAGAAGAGACAACTTCTGTTAACAAAGCAGTACAATCGGGCCAGGTTGTCGCGGGCCACCTCTaGCAGAGGCAAGTAGGGTTG | + |
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Preference number: 4 (lower is better) Translates to: TFKEETTSVNKAVQSGQVVAGHL*QRQVGL Trigger: CAACCCTACTTGCCTCTGCCAGAGGTGGCCCGCGAC...AACCTGGCCCGATTGTACTGCTTTGTTAACAGAAGTTGTCTCTTCTTTGAAAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS-3UTR CCA 90 bp | TTCAAAGAAGAGACAACTTCTGTTAACAAAGCAGTACAATCGGGCCAGGTTTTACCAGCGAGGTGGCTCTaGCCCTCCTGCACAGCCTTA | + |
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Preference number: 4 (lower is better) Translates to: FKEETTSVNKAVQSGQVLPARWL*PSCTAL Trigger: TAAGGCTGTGCAGGAGGGCCAGAGCCACCTCGCTGG...TAAAACCTGGCCCGATTGTACTGCTTTGTTAACAGAAGTTGTCTCTTCTTTGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS-3UTR CCA 90 bp | ACTTTCAAAGAAGAGACAACTTCTGTTAACAAAGCAGTACAATCGGGCCAGGTTGGACGGTGCCAGACCTaGGTGGATTCCCACCATCTA | + |
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Preference number: 4 (lower is better) Translates to: TFKEETTSVNKAVQSGQVGRCQT*VDSHHL Trigger: TAGATGGTGGGAATCCACCCAGGTCTGGCACCGTCC...AACCTGGCCCGATTGTACTGCTTTGTTAACAGAAGTTGTCTCTTCTTTGAAAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS-3UTR GCA 90 bp | TCCTTCTTCCACATACCTTTCTTTTATAGAAATACCAGGAACATGCAAAGGATTTGGCTCTGGCCCTCCTaGACAGCCTTACCCCCACGA | + |
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Preference number: 4 (lower is better) Translates to: SFFHIPFFYRNTRNMQRIWLWPS*TALPPR Trigger: TCGTGGGGGTAAGGCTGTGCAGGAGGGCCAGAGCCA...AATCCTTTGCATGTTCCTGGTATTTCTATAAAAGAAAGGTATGTGGAAGAAGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS-3UTR TCA 90 bp | ACTTTCAAAGAAGAGACAACTTCTGTTAACAAAGCAGTACAATCGGGCCAGGTTATTGTGGACCCAGCCTaGGCTATGCCCAGCAAAACA | + |
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Preference number: 4 (lower is better) Translates to: TFKEETTSVNKAVQSGQVIVDPA*AMPSKT Trigger: TGTTTTGCTGGGCATAGCTCAGGCTGGGTCCACAAT...AACCTGGCCCGATTGTACTGCTTTGTTAACAGAAGTTGTCTCTTCTTTGAAAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS-3UTR TCA 90 bp | TCCTTCTTCCACATACCTTTCTTTTATAGAAATACCAGGAACATGCAAAGGATTCCAGAGTCTGGCTGCTaGGTGCCGGTGATCCTCCAT | + |
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Preference number: 4 (lower is better) Translates to: SFFHIPFFYRNTRNMQRIPESGC*VPVILH Trigger: ATGGAGGATCACCGGCACTCAGCAGCCAGACTCTGG...AATCCTTTGCATGTTCCTGGTATTTCTATAAAAGAAAGGTATGTGGAAGAAGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS-3UTR CCA 90 bp | ACTTTCAAAGAAGAGACAACTTCTGTTAACAAAGCAGTACAATCGGGCCAGGTTGTCCAGAACCAGCTGTaGCAATACTGTGCCATCAGG | + |
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Preference number: 4 (lower is better) Translates to: TFKEETTSVNKAVQSGQVVQNQL*QYCAIR Trigger: CCTGATGGCACAGTATTGCCACAGCTGGTTCTGGAC...AACCTGGCCCGATTGTACTGCTTTGTTAACAGAAGTTGTCTCTTCTTTGAAAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS-3UTR CCA 90 bp | TCCTTCTTCCACATACCTTTCTTTTATAGAAATACCAGGAACATGCAAAGGATTAGTATGTCCTCATCTTaGGCAGGGTCGCGGGCCACC | + |
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Preference number: 4 (lower is better) Translates to: SFFHIPFFYRNTRNMQRISMSSS*AGSRAT Trigger: GGTGGCCCGCGACCCTGCCCAAGATGAGGACATACT...AATCCTTTGCATGTTCCTGGTATTTCTATAAAAGAAAGGTATGTGGAAGAAGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS-3UTR TCA 90 bp | ACTTTCAAAGAAGAGACAACTTCTGTTAACAAAGCAGTACAATCGGGCCAGGTTCAGAGGCCAAGGCAATaGCCAGGTAGAGTGTTAGTA | + |
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Preference number: 4 (lower is better) Translates to: TFKEETTSVNKAVQSGQVQRPRQ*PGRVLV Trigger: TACTAACACTCTACCTGGTCATTGCCTTGGCCTCTG...AACCTGGCCCGATTGTACTGCTTTGTTAACAGAAGTTGTCTCTTCTTTGAAAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS-3UTR GCA 90 bp | TCCTTCTTCCACATACCTTTCTTTTATAGAAATACCAGGAACATGCAAAGGATTGTGACGCTGGCAGAATaGGGAGGGTCTCCATTGTCC | + |
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Preference number: 4 (lower is better) Translates to: SFFHIPFFYRNTRNMQRIVTLAE*GGSPLS Trigger: GGACAATGGAGACCCTCCGCATTCTGCCAGCGTCAC...AATCCTTTGCATGTTCCTGGTATTTCTATAAAAGAAAGGTATGTGGAAGAAGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS-3UTR TCA 90 bp | TCCTTCTTCCACATACCTTTCTTTTATAGAAATACCAGGAACATGCAAAGGATTCTGAATCTGTGGCACTaGTGGTGCCTATGTGCAGGG | + |
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Preference number: 4 (lower is better) Translates to: SFFHIPFFYRNTRNMQRILNLWH*WCLCAG Trigger: CCCTGCACATAGGCACCATCAGTGCCACAGATTCAG...AATCCTTTGCATGTTCCTGGTATTTCTATAAAAGAAAGGTATGTGGAAGAAGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS-3UTR TCA 90 bp | TTCAAAGAAGAGACAACTTCTGTTAACAAAGCAGTACAATCGGGCCAGGTTTTATCTGTCTCTGAACTCTaGAGGAGGAAATTGGGGATG | + |
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Preference number: 4 (lower is better) Translates to: FKEETTSVNKAVQSGQVLSVSEL*RRKLGM Trigger: CATCCCCAATTTCCTCCTTCAGAGTTCAGAGACAGA...TAAAACCTGGCCCGATTGTACTGCTTTGTTAACAGAAGTTGTCTCTTCTTTGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS-3UTR TCA 90 bp | ACTTTCAAAGAAGAGACAACTTCTGTTAACAAAGCAGTACAATCGGGCCAGGTTGCGTTTTCTGGGATGTaGTTGGTAAATGTGGACATA | + |
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Preference number: 4 (lower is better) Translates to: TFKEETTSVNKAVQSGQVAFSGM*LVNVDI Trigger: TATGTCCACATTTACCAATCACATCCCAGAAAACGC...AACCTGGCCCGATTGTACTGCTTTGTTAACAGAAGTTGTCTCTTCTTTGAAAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS-3UTR GCA 90 bp | TTCAAAGAAGAGACAACTTCTGTTAACAAAGCAGTACAATCGGGCCAGGTTTTAAAAAACACCGTTCTCTaGTTCCTCCTCCACGGAATA | + |
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Preference number: 4 (lower is better) Translates to: FKEETTSVNKAVQSGQVLKNTVL*FLLHGI Trigger: TATTCCGTGGAGGAGGAAGCAGAGAACGGTGTTTTT...TAAAACCTGGCCCGATTGTACTGCTTTGTTAACAGAAGTTGTCTCTTCTTTGAA 41% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS-3UTR GCA 90 bp | TTCAAAGAAGAGACAACTTCTGTTAACAAAGCAGTACAATCGGGCCAGGTTTTAGCTGTGGCAATACTGTaGCATCAGGACTGTTTTGTA | + |
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Preference number: 4 (lower is better) Translates to: FKEETTSVNKAVQSGQVLAVAIL*HQDCFV Trigger: TACAAAACAGTCCTGATGGCACAGTATTGCCACAGC...TAAAACCTGGCCCGATTGTACTGCTTTGTTAACAGAAGTTGTCTCTTCTTTGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS-3UTR TCA 90 bp | ACTTTCAAAGAAGAGACAACTTCTGTTAACAAAGCAGTACAATCGGGCCAGGTTAGAAAAACGGGAGAATaGTCATTTATGTCCCTAATC | + |
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Preference number: 4 (lower is better) Translates to: TFKEETTSVNKAVQSGQVRKTGE*SFMSLI Trigger: GATTAGGGACATAAATGATCATTCTCCCGTTTTTCT...AACCTGGCCCGATTGTACTGCTTTGTTAACAGAAGTTGTCTCTTCTTTGAAAGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS-3UTR TCA 90 bp | TTCAAAGAAGAGACAACTTCTGTTAACAAAGCAGTACAATCGGGCCAGGTTTTACCTACATCTAAGTCTTaGGCACGTTCTATTAGGAAA | + |
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Preference number: 4 (lower is better) Translates to: FKEETTSVNKAVQSGQVLPTSKS*ARSIRK Trigger: TTTCCTAATAGAACGTGCTCAAGACTTAGATGTAGG...TAAAACCTGGCCCGATTGTACTGCTTTGTTAACAGAAGTTGTCTCTTCTTTGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS-3UTR TCA 90 bp | TTCAAAGAAGAGACAACTTCTGTTAACAAAGCAGTACAATCGGGCCAGGTTTTAATCATTCTCTGTCTCTaGACTCTGAAGGAGGAAATT | + |
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Preference number: 4 (lower is better) Translates to: FKEETTSVNKAVQSGQVLIILCL*TLKEEI Trigger: AATTTCCTCCTTCAGAGTTCAGAGACAGAGAATGAT...TAAAACCTGGCCCGATTGTACTGCTTTGTTAACAGAAGTTGTCTCTTCTTTGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS-3UTR GCA 90 bp | ACTTTCAAAGAAGAGACAACTTCTGTTAACAAAGCAGTACAATCGGGCCAGGTTGATTTCTCCGGATGTTaGATTCATTCGAAACGTTTT | + |
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Preference number: 4 (lower is better) Translates to: TFKEETTSVNKAVQSGQVDFSGC*IHSKRF Trigger: AAAACGTTTCGAATGAATGCAACATCCGGAGAAATC...AACCTGGCCCGATTGTACTGCTTTGTTAACAGAAGTTGTCTCTTCTTTGAAAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS-3UTR CCA 90 bp | ACTTTCAAAGAAGAGACAACTTCTGTTAACAAAGCAGTACAATCGGGCCAGGTTTTGTATATGCCTGGATaGATTCAAAATCCAGTGTCT | + |
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Preference number: 4 (lower is better) Translates to: TFKEETTSVNKAVQSGQVLYMPG*IQNPVS Trigger: AGACACTGGATTTTGAATCCATCCAGGCATATACAA...AACCTGGCCCGATTGTACTGCTTTGTTAACAGAAGTTGTCTCTTCTTTGAAAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS-3UTR CCA 90 bp | TCCTTCTTCCACATACCTTTCTTTTATAGAAATACCAGGAACATGCAAAGGATTCAAGAACTTGAAATCTaGGGTCCCAGTATCTCCAGT | + |
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Preference number: 4 (lower is better) Translates to: SFFHIPFFYRNTRNMQRIQELEI*GPSISS Trigger: ACTGGAGATACTGGGACCCCAGATTTCAAGTTCTTG...AATCCTTTGCATGTTCCTGGTATTTCTATAAAAGAAAGGTATGTGGAAGAAGGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS-3UTR CCA 90 bp | TCCTTCTTCCACATACCTTTCTTTTATAGAAATACCAGGAACATGCAAAGGATTGGACATAGTCAGTTCTaGAGGGTTGTCATTCAAATC | + |
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Preference number: 4 (lower is better) Translates to: SFFHIPFFYRNTRNMQRIGHSQF*RVVIQI Trigger: GATTTGAATGACAACCCTCCAGAACTGACTATGTCC...AATCCTTTGCATGTTCCTGGTATTTCTATAAAAGAAAGGTATGTGGAAGAAGGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS-3UTR CCA 90 bp | ACTTTCAAAGAAGAGACAACTTCTGTTAACAAAGCAGTACAATCGGGCCAGGTTAAAGGAAGATCTTCTTaGATGGAGCAAACCATTTTT | + |
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Preference number: 4 (lower is better) Translates to: TFKEETTSVNKAVQSGQVKGRSS*MEQTIF Trigger: AAAAATGGTTTGCTCCATCCAAGAAGATCTTCCTTT...AACCTGGCCCGATTGTACTGCTTTGTTAACAGAAGTTGTCTCTTCTTTGAAAGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS-3UTR TCA 90 bp | TCCTTCTTCCACATACCTTTCTTTTATAGAAATACCAGGAACATGCAAAGGATTATCTGTAGCTCAGCCTaGAAAATCTGCAAAGGATTT | + |
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Preference number: 4 (lower is better) Translates to: SFFHIPFFYRNTRNMQRIICSSA*KICKGF Trigger: AAATCCTTTGCAGATTTTTCAGGCTGAGCTACAGAT...AATCCTTTGCATGTTCCTGGTATTTCTATAAAAGAAAGGTATGTGGAAGAAGGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS-3UTR GCA 90 bp | TCCTTCTTCCACATACCTTTCTTTTATAGAAATACCAGGAACATGCAAAGGATTAAGTTTGGAGACCGTTaGTTCCTACATCTAAGTCTT | + |
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Preference number: 4 (lower is better) Translates to: SFFHIPFFYRNTRNMQRIKFGDR*FLHLSL Trigger: AAGACTTAGATGTAGGAAGCAACGGTCTCCAAACTT...AATCCTTTGCATGTTCCTGGTATTTCTATAAAAGAAAGGTATGTGGAAGAAGGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS-3UTR CCA 90 bp | TCCTTCTTCCACATACCTTTCTTTTATAGAAATACCAGGAACATGCAAAGGATTGAAATTGGGGATGATTaGTTTCAAGAACTTGAAATC | + |
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Preference number: 4 (lower is better) Translates to: SFFHIPFFYRNTRNMQRIEIGDD*FQELEI Trigger: GATTTCAAGTTCTTGAAACCAATCATCCCCAATTTC...AATCCTTTGCATGTTCCTGGTATTTCTATAAAAGAAAGGTATGTGGAAGAAGGA 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS-3UTR CAA 90 bp | ACTTTCAAAGAAGAGACAACTTCTGTTAACAAAGCAGTACAATCGGGCCAGGTTAGCAGCAGCCTGTGTTaGGGTGCATCTCGCTCACTC | + |
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Preference number: 5 (lower is better) Translates to: TFKEETTSVNKAVQSGQVSSSLC*GASRSL Trigger: GAGTGAGCGAGATGCACCCAAACACAGGCTGCTGCT...AACCTGGCCCGATTGTACTGCTTTGTTAACAGAAGTTGTCTCTTCTTTGAAAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS-3UTR CAA 90 bp | TCCTTCTTCCACATACCTTTCTTTTATAGAAATACCAGGAACATGCAAAGGATTTCCCGATCCAGCACTTaGTCCAGAACCAGCTGTGGC | + |
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Preference number: 5 (lower is better) Translates to: SFFHIPFFYRNTRNMQRISRSST*SRTSCG Trigger: GCCACAGCTGGTTCTGGACAAAGTGCTGGATCGGGA...AATCCTTTGCATGTTCCTGGTATTTCTATAAAAGAAAGGTATGTGGAAGAAGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS-3UTR CAA 90 bp | TTCAAAGAAGAGACAACTTCTGTTAACAAAGCAGTACAATCGGGCCAGGTTTTAGTTGATTGTGTAAGTTaGGAGACCGTTGCTTCCTAC | + |
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Preference number: 5 (lower is better) Translates to: FKEETTSVNKAVQSGQVLVDCVS*ETVASY Trigger: GTAGGAAGCAACGGTCTCCAAACTTACACAATCAAC...TAAAACCTGGCCCGATTGTACTGCTTTGTTAACAGAAGTTGTCTCTTCTTTGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS-3UTR CAA 90 bp | TCCTTCTTCCACATACCTTTCTTTTATAGAAATACCAGGAACATGCAAAGGATTTGCAGGGCAGGGCTGTaGTTTTCTCGGACAAATATG | + |
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Preference number: 5 (lower is better) Translates to: SFFHIPFFYRNTRNMQRICRAGL*FSRTNM Trigger: CATATTTGTCCGAGAAAACAACAGCCCTGCCCTGCA...AATCCTTTGCATGTTCCTGGTATTTCTATAAAAGAAAGGTATGTGGAAGAAGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS-3UTR CAA 90 bp | TTCAAAGAAGAGACAACTTCTGTTAACAAAGCAGTACAATCGGGCCAGGTTTTAGGTCCTTTAACAAATTaGCCACAAAAACACCGTTCT | + |
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Preference number: 5 (lower is better) Translates to: FKEETTSVNKAVQSGQVLGPLTN*PQKHRS Trigger: AGAACGGTGTTTTTGTGGCAAATTTGTTAAAGGACC...TAAAACCTGGCCCGATTGTACTGCTTTGTTAACAGAAGTTGTCTCTTCTTTGAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS-3UTR CAA 90 bp | ACTTTCAAAGAAGAGACAACTTCTGTTAACAAAGCAGTACAATCGGGCCAGGTTATTCAAATCCATTACTaGAACAATCACCACACTGCT | + |
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Preference number: 5 (lower is better) Translates to: TFKEETTSVNKAVQSGQVIQIHY*NNHHTA Trigger: AGCAGTGTGGTGATTGTTCAAGTAATGGATTTGAAT...AACCTGGCCCGATTGTACTGCTTTGTTAACAGAAGTTGTCTCTTCTTTGAAAGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS-3UTR CAA 90 bp | TCCTTCTTCCACATACCTTTCTTTTATAGAAATACCAGGAACATGCAAAGGATTACCGGGGCATTGTCATaGATGTCTAAGACTTCAATA | + |
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Preference number: 5 (lower is better) Translates to: SFFHIPFFYRNTRNMQRITGALS*MSKTSI Trigger: TATTGAAGTCTTAGACATCAATGACAATGCCCCGGT...AATCCTTTGCATGTTCCTGGTATTTCTATAAAAGAAAGGTATGTGGAAGAAGGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS CCA 72 bp | CCCGCGCCGCCAACATCTACCAGGTGGGCTGGAAAGTaGCCTTCGGGCATAGAGCAGCCACCCAGCGAGGTG | + |
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Preference number: 6 (lower is better) Translates to: PAPPTSTRWAGK*PSGIEQPPSEV Trigger: CACCTCGCTGGGTGGCTGCTCTATGCCCGAAGGCCACTTTCCAGCCCACCTGGTAGATGTTGGCGGCGCGGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS GCA 72 bp | GGTATCCGGGCTCTGCCGCCCTGGGCAGCAGCTCAGTaGAGGGCACAGAAGAGTTCTGTAGTGGGTAGAGCA | + |
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Preference number: 6 (lower is better) Translates to: GIRALPPWAAAQ*RAQKSSVVGRA Trigger: TGCTCTACCCACTACAGAACTCTTCTGTGCCCTGCACTGAGCTGCTGCCCAGGGCGGCAGAGCCCGGATACC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS CCA 72 bp | TCATTGTCATCCAGCACCACCACACGCACCAGAGTCTaGCTGCTGAGTGCCGGTGATCCTCCATCTGTGGCG | + |
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Preference number: 6 (lower is better) Translates to: SLSSSTTTRTRV*LLSAGDPPSVA Trigger: CGCCACAGATGGAGGATCACCGGCACTCAGCAGCCAGACTCTGGTGCGTGTGGTGGTGCTGGATGACAATGA 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS CAA 72 bp | ATTCATTCGAAACGTTTTCCGAATGTCTTCAGAGGCTaGGGAAAAGGCGTAAGCTATATTTCCATGGTCCCC | + |
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Preference number: 6 (lower is better) Translates to: IHSKRFPNVFRG*GKGVSYISMVP Trigger: GGGGACCATGGAAATATAGCTTACGCCTTTTCCCAAGCCTCTGAAGACATTCGGAAAACGTTTCGAATGAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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| CDS CAA 72 bp | AATCCAGTGTCTTTACTAAAAGGATTTCTCCGGATGTaGCATTCATTCGAAACGTTTTCCGAATGTCTTCAG | + |
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Preference number: 6 (lower is better) Translates to: NPVSLLKGFLRM*HSFETFSECLQ Trigger: CTGAAGACATTCGGAAAACGTTTCGAATGAATGCAACATCCGGAGAAATCCTTTTAGTAAAGACACTGGATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056522.5 |
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