Pregenerated sensors for PCDHB19 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000043313Ensembl transcript IDs: ENSMUST00000059571.7
Found 113 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CAAAACACTCACACCATTCCTAGAGTTTTCTCTCTGCTTCCAATGTaGAGATCAAGATGTGAGCTCTCAGCTGTTCCTGCCAGCAAACAT | + |
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Preference number: 1 (lower is better) Translates to: QNTHTIPRVFSLLPM*RSRCELSAVPASKH Trigger: ATGTTTGCTGGCAGGAACAGCTGAGAGCTCACATCTTGATCTGCACATTGGAAGCAGAGAGAAAACTCTAGGAATGGTGTGAGTGTTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR CCA 90 bp | TCCCTACCTGGTAGAACTACTTGGAAAGGATTAGGAGGTATGGCCTaGTTGGAGGAAGTGTGTCATTGGAGCTTTGAGATTTCAAAACAC | + |
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Preference number: 1 (lower is better) Translates to: SLPGRTTWKGLGGMA*LEEVCHWSFEISKH Trigger: GTGTTTTGAAATCTCAAAGCTCCAATGACACACTTCCTCCAACCAGGCCATACCTCCTAATCCTTTCCAAGTAGTTCTACCAGGTAGGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR TCA 90 bp | ATTAGGAGGTATGGCCTGGTTGGAGGAAGTGTGTCATTGGAGCTTTaGGATTTCAAAACACTCACACCATTCCTAGAGTTTTCTCTCTGC | + |
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Preference number: 1 (lower is better) Translates to: IRRYGLVGGSVSLEL*DFKTLTPFLEFSLC Trigger: GCAGAGAGAAAACTCTAGGAATGGTGTGAGTGTTTTGAAATCTCAAAGCTCCAATGACACACTTCCTCCAACCAGGCCATACCTCCTAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR TCA 90 bp | TGTAAGGACACCGTGTCTGAAGACACATATACACATATGCATCACTaGGAGTATGTAGGGACACGGTGTCTGAAGACACATATACACACA | + |
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Preference number: 1 (lower is better) Translates to: CKDTVSEDTYTHMHH*EYVGTRCLKTHIHT Trigger: TGTGTGTATATGTGTCTTCAGACACCGTGTCCCTACATACTCTCAGTGATGCATATGTGTATATGTGTCTTCAGACACGGTGTCCTTACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR TCA 90 bp | CCCACTTGTTTATTATGTGTTTTTATCTATTTGGGTATCTATCACTaGGCTGTCCCCAAACTCACTATTGGCTCCTTCTCAACAGGCCTA | + |
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Preference number: 1 (lower is better) Translates to: PTCLLCVFIYLGIYH*AVPKLTIGSFSTGL Trigger: TAGGCCTGTTGAGAAGGAGCCAATAGTGAGTTTGGGGACAGCTCAGTGATAGATACCCAAATAGATAAAAACACATAATAAACAAGTGGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR TCA 90 bp | AAGACACACGACAACTTAGCTGACCTGCCTCTTTGTGGTTTTGTTTaGCCTTGGCAATTTTACAGATGGATTGACAACTGTCTTTACTTC | + |
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Preference number: 1 (lower is better) Translates to: KTHDNLADLPLCGFV*PWQFYRWIDNCLYF Trigger: GAAGTAAAGACAGTTGTCAATCCATCTGTAAAATTGCCAAGGTCAAACAAAACCACAAAGAGGCAGGTCAGCTAAGTTGTCGTGTGTCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR GCA 90 bp | CTAGAGTTAGGAAACACAGTTCCTTCAAAAATAGAGAGGTCTTGGTaGTCATATGTCTGGAAAAGCTTGAAGCAACAAGACAGTTACCTG | + |
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Preference number: 1 (lower is better) Translates to: LELGNTVPSKIERSW*SYVWKSLKQQDSYL Trigger: CAGGTAACTGTCTTGTTGCTTCAAGCTTTTCCAGACATATGAGCACCAAGACCTCTCTATTTTTGAAGGAACTGTGTTTCCTAACTCTAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR CCA 90 bp | CCACTAGAGTTAGGAAACACAGTTCCTTCAAAAATAGAGAGGTCTTaGTGCTCATATGTCTGGAAAAGCTTGAAGCAACAAGACAGTTAC | + |
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Preference number: 1 (lower is better) Translates to: PLELGNTVPSKIERS*CSYVWKSLKQQDSY Trigger: GTAACTGTCTTGTTGCTTCAAGCTTTTCCAGACATATGAGCACCAAGACCTCTCTATTTTTGAAGGAACTGTGTTTCCTAACTCTAGTGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR TCA 90 bp | CCTCACATCCTTTATTGTCACGTCTTTACCATCTTTCTCTCTCCATaGTGCTCATCATCTCTCATTTTCCTCCTTCTAGAAATACAGACT | + |
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Preference number: 1 (lower is better) Translates to: PHILYCHVFTIFLSP*CSSSLIFLLLEIQT Trigger: AGTCTGTATTTCTAGAAGGAGGAAAATGAGAGATGATGAGCATCATGGAGAGAGAAAGATGGTAAAGACGTGACAATAAAGGATGTGAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR TCA 90 bp | AGAACCACGAGGGCAAAGTTGCTCCCTTTATACAACCATTTTCATTaGCACCGTCACAAGAAAGAGAAAGACATTACAAAGCAATGTGTA | + |
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Preference number: 1 (lower is better) Translates to: RTTRAKLLPLYNHFH*HRHKKEKDITKQCV Trigger: TACACATTGCTTTGTAATGTCTTTCTCTTTCTTGTGACGGTGTCAATGAAAATGGTTGTATAAAGGGAGCAACTTTGCCCTCGTGGTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR CCA 90 bp | GCTTTCTCCTATTCACAGGATTGTTTAGGTGCCATTTCTTCCACCTaGCTTACATTCTGTCCTCATAAAGTTAGTGAGACACTTGTAAAA | + |
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Preference number: 1 (lower is better) Translates to: AFSYSQDCLGAISST*LTFCPHKVSETLVK Trigger: TTTTACAAGTGTCTCACTAACTTTATGAGGACAGAATGTAAGCCAGGTGGAAGAAATGGCACCTAAACAATCCTGTGAATAGGAGAAAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR CCA 90 bp | ATACTTTTGGATGCTGCTCTTCAGTGGAATCTGAGACAGACTCAGTaGCTTATGACCATATCAGGAAATTCAAGCAATAGAATAAGAGAG | + |
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Preference number: 1 (lower is better) Translates to: ILLDAALQWNLRQTQ*LMTISGNSSNRIRE Trigger: CTCTCTTATTCTATTGCTTGAATTTCCTGATATGGTCATAAGCCACTGAGTCTGTCTCAGATTCCACTGAAGAGCAGCATCCAAAAGTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR TCA 90 bp | CTAAAATATGTACCATGCTTCTACACGTACCCAAACACACAATGTTaGAGTATGAATGAGAATGCTTGCCATGGGCTTCTATGTTTGAAT | + |
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Preference number: 1 (lower is better) Translates to: LKYVPCFYTYPNTQC*SMNENACHGLLCLN Trigger: ATTCAAACATAGAAGCCCATGGCAAGCATTCTCATTCATACTTCAACATTGTGTGTTTGGGTACGTGTAGAAGCATGGTACATATTTTAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR CCA 90 bp | TCCCGTTTTTCTACAAAATGTCTTGTGTTGTTGGTTTGTTTGAATTaGAATCCAAACACAGACCATACTCTGTATGAAATCATTAGTGCT | + |
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Preference number: 1 (lower is better) Translates to: SRFSTKCLVLLVCLN*NPNTDHTLYEIISA Trigger: AGCACTAATGATTTCATACAGAGTATGGTCTGTGTTTGGATTCCAATTCAAACAAACCAACAACACAAGACATTTTGTAGAAAAACGGGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR-3UTR TCA 90 bp | ACTACTTGGAAAGGATTAGGAGGTATGGCCTGGTTGGAGGAAGTGTGTCATTGGTTGGGTATCTATCACTaGGCTGTCCCCAAACTCACT | + |
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Preference number: 2 (lower is better) Translates to: TTWKGLGGMAWLEEVCHWLGIYH*AVPKLT Trigger: AGTGAGTTTGGGGACAGCTCAGTGATAGATACCCAA...CCAATGACACACTTCCTCCAACCAGGCCATACCTCCTAATCCTTTCCAAGTAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR-3UTR TCA 90 bp | GCTCTCAGCTGTTCCTGCCAGCAAACATTTGCTGTGCCATCCTGGATTCTAACCATCTTTCTCTCTCCATaGTGCTCATCATCTCTCATT | + |
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Preference number: 2 (lower is better) Translates to: ALSCSCQQTFAVPSWILTIFLSP*CSSSLI Trigger: AATGAGAGATGATGAGCATCATGGAGAGAGAAAGAT...GGTTAGAATCCAGGATGGCACAGCAAATGTTTGCTGGCAGGAACAGCTGAGAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR CAA 90 bp | CTACCTGGTAGAACTACTTGGAAAGGATTAGGAGGTATGGCCTGGTaGGAGGAAGTGTGTCATTGGAGCTTTGAGATTTCAAAACACTCA | + |
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Preference number: 2 (lower is better) Translates to: LPGRTTWKGLGGMAW*EEVCHWSFEISKHS Trigger: TGAGTGTTTTGAAATCTCAAAGCTCCAATGACACACTTCCTCCAACCAGGCCATACCTCCTAATCCTTTCCAAGTAGTTCTACCAGGTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR-3UTR TCA 90 bp | ACTACTTGGAAAGGATTAGGAGGTATGGCCTGGTTGGAGGAAGTGTGTCATTGGAGACTCAGTGGCTTATaGCCATATCAGGAAATTCAA | + |
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Preference number: 2 (lower is better) Translates to: TTWKGLGGMAWLEEVCHWRLSGL*PYQEIQ Trigger: TTGAATTTCCTGATATGGTCATAAGCCACTGAGTCT...CCAATGACACACTTCCTCCAACCAGGCCATACCTCCTAATCCTTTCCAAGTAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR-3UTR TCA 90 bp | TTTAAGGTGAGTATGGTCTACACAGTGAGCTCCATGTCACTGAGAGTATGTAAGCTCTTCAGTGGAATCTaGGACAGACTCAGTGGCTTA | + |
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Preference number: 2 (lower is better) Translates to: FKVSMVYTVSSMSLRVCKLFSGI*DRLSGL Trigger: TAAGCCACTGAGTCTGTCTCAGATTCCACTGAAGAG...CTTACATACTCTCAGTGACATGGAGCTCACTGTGTAGACCATACTCACCTTAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR-3UTR TCA 90 bp | ACTACTTGGAAAGGATTAGGAGGTATGGCCTGGTTGGAGGAAGTGTGTCATTGGTCAGAGACTGACTGCTaGAAAGCTCACATTTTAGAA | + |
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Preference number: 2 (lower is better) Translates to: TTWKGLGGMAWLEEVCHWSETDC*KAHILE Trigger: TTCTAAAATGTGAGCTTTTCAGCAGTCAGTCTCTGA...CCAATGACACACTTCCTCCAACCAGGCCATACCTCCTAATCCTTTCCAAGTAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR-3UTR TCA 90 bp | TTTAAGGTGAGTATGGTCTACACAGTGAGCTCCATGTCACTGAGAGTATGTAAGCAGAAGAGTTCTAAATaGCCATCCTTTCCCCAAGCC | + |
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Preference number: 2 (lower is better) Translates to: FKVSMVYTVSSMSLRVCKQKSSK*PSFPQA Trigger: GGCTTGGGGAAAGGATGGTCATTTAGAACTCTTCTG...CTTACATACTCTCAGTGACATGGAGCTCACTGTGTAGACCATACTCACCTTAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR-3UTR CCA 90 bp | CCTTTATTGTCACGTCTTTACCATCTTTCTCTCTCCATGATGCTCATCATCTCTCCCCAAACTCACTATTaGCTCCTTCTCAACAGGCCT | + |
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Preference number: 2 (lower is better) Translates to: PLLSRLYHLSLSMMLIISPQTHY*LLLNRP Trigger: AGGCCTGTTGAGAAGGAGCCAATAGTGAGTTTGGGG...AGAGATGATGAGCATCATGGAGAGAGAAAGATGGTAAAGACGTGACAATAAAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR-3UTR CCA 90 bp | TTTAAGGTGAGTATGGTCTACACAGTGAGCTCCATGTCACTGAGAGTATGTAAGGATGCTGCTCTTCAGTaGAATCTGAGACAGACTCAG | + |
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Preference number: 2 (lower is better) Translates to: FKVSMVYTVSSMSLRVCKDAALQ*NLRQTQ Trigger: CTGAGTCTGTCTCAGATTCCACTGAAGAGCAGCATC...CTTACATACTCTCAGTGACATGGAGCTCACTGTGTAGACCATACTCACCTTAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR-3UTR CCA 90 bp | TTTAAGGTGAGTATGGTCTACACAGTGAGCTCCATGTCACTGAGAGTATGTAAGTGCAAGTCAAAGTGTTaGAAAAGACAGGTGGGAAGG | + |
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Preference number: 2 (lower is better) Translates to: FKVSMVYTVSSMSLRVCKCKSKC*KRQVGR Trigger: CCTTCCCACCTGTCTTTTCCAACACTTTGACTTGCA...CTTACATACTCTCAGTGACATGGAGCTCACTGTGTAGACCATACTCACCTTAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR-3UTR TCA 90 bp | TTTAAGGTGAGTATGGTCTACACAGTGAGCTCCATGTCACTGAGAGTATGTAAGTGGATTCTAACCCTCTaGAACTGTAAGTCCAGAGTT | + |
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Preference number: 2 (lower is better) Translates to: FKVSMVYTVSSMSLRVCKWILTL*NCKSRV Trigger: AACTCTGGACTTACAGTTTCAGAGGGTTAGAATCCA...CTTACATACTCTCAGTGACATGGAGCTCACTGTGTAGACCATACTCACCTTAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR-3UTR GCA 90 bp | ACTACTTGGAAAGGATTAGGAGGTATGGCCTGGTTGGAGGAAGTGTGTCATTGGGAATGTTGCATAATATaGACAGCAAATGTGTGTACT | + |
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Preference number: 2 (lower is better) Translates to: TTWKGLGGMAWLEEVCHWECCII*TANVCT Trigger: AGTACACACATTTGCTGTGCATATTATGCAACATTC...CCAATGACACACTTCCTCCAACCAGGCCATACCTCCTAATCCTTTCCAAGTAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR-3UTR GCA 90 bp | TTTAAGGTGAGTATGGTCTACACAGTGAGCTCCATGTCACTGAGAGTATGTAAGCATACTTTTGGATGCTaGTCTTCAGTGGAATCTGAG | + |
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Preference number: 2 (lower is better) Translates to: FKVSMVYTVSSMSLRVCKHTFGC*SSVESE Trigger: CTCAGATTCCACTGAAGAGCAGCATCCAAAAGTATG...CTTACATACTCTCAGTGACATGGAGCTCACTGTGTAGACCATACTCACCTTAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR-3UTR GCA 90 bp | TTTAAGGTGAGTATGGTCTACACAGTGAGCTCCATGTCACTGAGAGTATGTAAGCCCATATGCACATTTTaGGTGGATGCAAAGATTCCA | + |
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Preference number: 2 (lower is better) Translates to: FKVSMVYTVSSMSLRVCKPICTF*VDAKIP Trigger: TGGAATCTTTGCATCCACGCAAAATGTGCATATGGG...CTTACATACTCTCAGTGACATGGAGCTCACTGTGTAGACCATACTCACCTTAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR-3UTR CCA 90 bp | TTTAAGGTGAGTATGGTCTACACAGTGAGCTCCATGTCACTGAGAGTATGTAAGTTGAAAGAATGTTTCTaGCAGACGCTGTCTCTAGTC | + |
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Preference number: 2 (lower is better) Translates to: FKVSMVYTVSSMSLRVCKLKECF*QTLSLV Trigger: GACTAGAGACAGCGTCTGCCAGAAACATTCTTTCAA...CTTACATACTCTCAGTGACATGGAGCTCACTGTGTAGACCATACTCACCTTAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR-3UTR TCA 90 bp | TTTAAGGTGAGTATGGTCTACACAGTGAGCTCCATGTCACTGAGAGTATGTAAGGTGTCATTGGAGCTTTaGGATTTCAAAACACTCACA | + |
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Preference number: 2 (lower is better) Translates to: FKVSMVYTVSSMSLRVCKVSLEL*DFKTLT Trigger: TGTGAGTGTTTTGAAATCTCAAAGCTCCAATGACAC...CTTACATACTCTCAGTGACATGGAGCTCACTGTGTAGACCATACTCACCTTAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR-3UTR CCA 90 bp | GTCTCCTTATCTATAGTGTTGCCTCCAAAGGTTTTAGTCACTGAAATTTGTAAGTTAGGAGGTATGGCCTaGTTGGAGGAAGTGTGTCAT | + |
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Preference number: 2 (lower is better) Translates to: VSLSIVLPPKVLVTEICKLGGMA*LEEVCH Trigger: ATGACACACTTCCTCCAACCAGGCCATACCTCCTAA...CTTACAAATTTCAGTGACTAAAACCTTTGGAGGCAACACTATAGATAAGGAGAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR CAA 90 bp | AAATTGTATATTATCTCACAGGCTTGCTTTCTCCTATTCACAGGATaGTTTAGGTGCCATTTCTTCCACCTGGCTTACATTCTGTCCTCA | + |
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Preference number: 2 (lower is better) Translates to: KLYIISQACFLLFTG*FRCHFFHLAYILSS Trigger: TGAGGACAGAATGTAAGCCAGGTGGAAGAAATGGCACCTAAACAATCCTGTGAATAGGAGAAAGCAAGCCTGTGAGATAATATACAATTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR CAA 90 bp | TCCACTAGAGTTAGGAAACACAGTTCCTTCAAAAATAGAGAGGTCTaGGTGCTCATATGTCTGGAAAAGCTTGAAGCAACAAGACAGTTA | + |
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Preference number: 2 (lower is better) Translates to: STRVRKHSSFKNREV*VLICLEKLEATRQL Trigger: TAACTGTCTTGTTGCTTCAAGCTTTTCCAGACATATGAGCACCAAGACCTCTCTATTTTTGAAGGAACTGTGTTTCCTAACTCTAGTGGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR-3UTR GCA 90 bp | GTCTCCTTATCTATAGTGTTGCCTCCAAAGGTTTTAGTCACTGAAATTTGTAAGACAGGATTGTTTAGGTaGCATTTCTTCCACCTGGCT | + |
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Preference number: 2 (lower is better) Translates to: VSLSIVLPPKVLVTEICKTGLFR*HFFHLA Trigger: AGCCAGGTGGAAGAAATGGCACCTAAACAATCCTGT...CTTACAAATTTCAGTGACTAAAACCTTTGGAGGCAACACTATAGATAAGGAGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR-3UTR GCA 90 bp | CCTTTATTGTCACGTCTTTACCATCTTTCTCTCTCCATGATGCTCATCATCTCTCATCATACTTTTGGATaGTGCTCTTCAGTGGAATCT | + |
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Preference number: 2 (lower is better) Translates to: PLLSRLYHLSLSMMLIISHHTFG*CSSVES Trigger: AGATTCCACTGAAGAGCAGCATCCAAAAGTATGATG...AGAGATGATGAGCATCATGGAGAGAGAAAGATGGTAAAGACGTGACAATAAAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR-3UTR GCA 90 bp | GTCTCCTTATCTATAGTGTTGCCTCCAAAGGTTTTAGTCACTGAAATTTGTAAGATGAATGAGAATGCTTaGCATGGGCTTCTATGTTTG | + |
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Preference number: 2 (lower is better) Translates to: VSLSIVLPPKVLVTEICKMNENA*HGLLCL Trigger: CAAACATAGAAGCCCATGGCAAGCATTCTCATTCAT...CTTACAAATTTCAGTGACTAAAACCTTTGGAGGCAACACTATAGATAAGGAGAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR CAA 90 bp | ATAGACCTGGAGAAAGTATGTACCTTTGTCTCCTTATCTATAGTGTaGCCTCCAAAGGTTTTAGTCACTGAAATTTGTAAGCTGACATTT | + |
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Preference number: 2 (lower is better) Translates to: IDLEKVCTFVSLSIV*PPKVLVTEICKLTF Trigger: AAATGTCAGCTTACAAATTTCAGTGACTAAAACCTTTGGAGGCAACACTATAGATAAGGAGACAAAGGTACATACTTTCTCCAGGTCTAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR-3UTR TCA 90 bp | GTCTCCTTATCTATAGTGTTGCCTCCAAAGGTTTTAGTCACTGAAATTTGTAAGTGGTTGCAAAGAAAATaGAACTACCCTTCGTTAATG | + |
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Preference number: 2 (lower is better) Translates to: VSLSIVLPPKVLVTEICKWLQRK*NYPSLM Trigger: CATTAACGAAGGGTAGTTTCATTTTCTTTGCAACCA...CTTACAAATTTCAGTGACTAAAACCTTTGGAGGCAACACTATAGATAAGGAGAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR-3UTR TCA 90 bp | GTCTCCTTATCTATAGTGTTGCCTCCAAAGGTTTTAGTCACTGAAATTTGTAAGCCAAACACACAATGTTaGAGTATGAATGAGAATGCT | + |
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Preference number: 2 (lower is better) Translates to: VSLSIVLPPKVLVTEICKPNTQC*SMNENA Trigger: AGCATTCTCATTCATACTTCAACATTGTGTGTTTGG...CTTACAAATTTCAGTGACTAAAACCTTTGGAGGCAACACTATAGATAAGGAGAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR CAA 90 bp | GAGCTTTCCCGTTTTTCTACAAAATGTCTTGTGTTGTTGGTTTGTTaGAATTGGAATCCAAACACAGACCATACTCTGTATGAAATCATT | + |
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Preference number: 2 (lower is better) Translates to: ELSRFSTKCLVLLVC*NWNPNTDHTLYEII Trigger: AATGATTTCATACAGAGTATGGTCTGTGTTTGGATTCCAATTCAAACAAACCAACAACACAAGACATTTTGTAGAAAAACGGGAAAGCTC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR GCA 72 bp | GATGTGAGCTCTCAGCTGTTCCTGCCAGCAAACATTTaGTGTGCCATCCTGGATTCTAACCCTCTGAAACTG | + |
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Preference number: 3 (lower is better) Translates to: DVSSQLFLPANI*CAILDSNPLKL Trigger: CAGTTTCAGAGGGTTAGAATCCAGGATGGCACAGCAAATGTTTGCTGGCAGGAACAGCTGAGAGCTCACATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR-3UTR CAA 90 bp | CAGCTGTTCCTGCCAGCAAACATTTGCTGTGCCATCCTGGATTCTAACCCTCTGATGCAAGTCAAAGTGTaGGAAAAGACAGGTGGGAAG | + |
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Preference number: 3 (lower is better) Translates to: QLFLPANICCAILDSNPLMQVKV*EKTGGK Trigger: CTTCCCACCTGTCTTTTCCAACACTTTGACTTGCAT...CAGAGGGTTAGAATCCAGGATGGCACAGCAAATGTTTGCTGGCAGGAACAGCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR-3UTR CAA 90 bp | ACTACTTGGAAAGGATTAGGAGGTATGGCCTGGTTGGAGGAAGTGTGTCATTGGAAGCGCTGGCATAAATaGAAAAGTGGGAGGGACATA | + |
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Preference number: 3 (lower is better) Translates to: TTWKGLGGMAWLEEVCHWKRWHK*KSGRDI Trigger: TATGTCCCTCCCACTTTTCAATTTATGCCAGCGCTT...CCAATGACACACTTCCTCCAACCAGGCCATACCTCCTAATCCTTTCCAAGTAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR-3UTR CAA 90 bp | CAGCTGTTCCTGCCAGCAAACATTTGCTGTGCCATCCTGGATTCTAACCCTCTGACCACCTGTCCCCACTaGTTTATTATGTGTTTTTAT | + |
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Preference number: 3 (lower is better) Translates to: QLFLPANICCAILDSNPLTTCPH*FIMCFY Trigger: ATAAAAACACATAATAAACAAGTGGGGACAGGTGGT...CAGAGGGTTAGAATCCAGGATGGCACAGCAAATGTTTGCTGGCAGGAACAGCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR-3UTR CAA 90 bp | GCTCTCAGCTGTTCCTGCCAGCAAACATTTGCTGTGCCATCCTGGATTCTAACCATACAACCATTTTCATaGACACCGTCACAAGAAAGA | + |
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Preference number: 3 (lower is better) Translates to: ALSCSCQQTFAVPSWILTIQPFS*TPSQER Trigger: TCTTTCTTGTGACGGTGTCAATGAAAATGGTTGTAT...GGTTAGAATCCAGGATGGCACAGCAAATGTTTGCTGGCAGGAACAGCTGAGAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR-3UTR CAA 90 bp | CAGCTGTTCCTGCCAGCAAACATTTGCTGTGCCATCCTGGATTCTAACCCTCTGTGGTTTTGTTTGACCTaGGCAATTTTACAGATGGAT | + |
|
Preference number: 3 (lower is better) Translates to: QLFLPANICCAILDSNPLWFCLT*AILQMD Trigger: ATCCATCTGTAAAATTGCCAAGGTCAAACAAAACCA...CAGAGGGTTAGAATCCAGGATGGCACAGCAAATGTTTGCTGGCAGGAACAGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| 3UTR CCA 72 bp | GGTAGAACTACTTGGAAAGGATTAGGAGGTATGGCCTaGTTGGAGGAAGTGTGTCATTGGAGCTTTGAGATT | + |
|
Preference number: 3 (lower is better) Translates to: GRTTWKGLGGMA*LEEVCHWSFEI Trigger: AATCTCAAAGCTCCAATGACACACTTCCTCCAACCAGGCCATACCTCCTAATCCTTTCCAAGTAGTTCTACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| 3UTR-3UTR CAA 90 bp | ACTACTTGGAAAGGATTAGGAGGTATGGCCTGGTTGGAGGAAGTGTGTCATTGGGTCTTTACTTCTATTTaGTCTGGGACAGAAGAGTTC | + |
|
Preference number: 3 (lower is better) Translates to: TTWKGLGGMAWLEEVCHWVFTSI*SGTEEF Trigger: GAACTCTTCTGTCCCAGACAAAATAGAAGTAAAGAC...CCAATGACACACTTCCTCCAACCAGGCCATACCTCCTAATCCTTTCCAAGTAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| 3UTR-3UTR CAA 90 bp | ACTACTTGGAAAGGATTAGGAGGTATGGCCTGGTTGGAGGAAGTGTGTCATTGGTGCCTCTTTGTGGTTTaGTTTGACCTTGGCAATTTT | + |
|
Preference number: 3 (lower is better) Translates to: TTWKGLGGMAWLEEVCHWCLFVV*FDLGNF Trigger: AAAATTGCCAAGGTCAAACAAAACCACAAAGAGGCA...CCAATGACACACTTCCTCCAACCAGGCCATACCTCCTAATCCTTTCCAAGTAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| 3UTR-3UTR CAA 90 bp | ACTACTTGGAAAGGATTAGGAGGTATGGCCTGGTTGGAGGAAGTGTGTCATTGGATACAGACTTTAGACTaGTTAGGAAATTCACAGGAG | + |
|
Preference number: 3 (lower is better) Translates to: TTWKGLGGMAWLEEVCHWIQTLD*LGNSQE Trigger: CTCCTGTGAATTTCCTAACAAGTCTAAAGTCTGTAT...CCAATGACACACTTCCTCCAACCAGGCCATACCTCCTAATCCTTTCCAAGTAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| 3UTR TCA 72 bp | TATGGCCTGGTTGGAGGAAGTGTGTCATTGGAGCTTTaGGATTTCAAAACACTCACACCATTCCTAGAGTTT | + |
|
Preference number: 3 (lower is better) Translates to: YGLVGGSVSLEL*DFKTLTPFLEF Trigger: AAACTCTAGGAATGGTGTGAGTGTTTTGAAATCTCAAAGCTCCAATGACACACTTCCTCCAACCAGGCCATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| 3UTR TCA 72 bp | GTACCATGCTTCTACACGTACCCAAACACACAATGTTaGAGTATGAATGAGAATGCTTGCCATGGGCTTCTA | + |
|
Preference number: 3 (lower is better) Translates to: VPCFYTYPNTQC*SMNENACHGLL Trigger: TAGAAGCCCATGGCAAGCATTCTCATTCATACTTCAACATTGTGTGTTTGGGTACGTGTAGAAGCATGGTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| 3UTR GCA 72 bp | TTCAAAACACTCACACCATTCCTAGAGTTTTCTCTCTaGTTCCAATGTGCAGATCAAGATGTGAGCTCTCAG | + |
|
Preference number: 3 (lower is better) Translates to: FKTLTPFLEFSL*FQCADQDVSSQ Trigger: CTGAGAGCTCACATCTTGATCTGCACATTGGAAGCAGAGAGAAAACTCTAGGAATGGTGTGAGTGTTTTGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| 3UTR CCA 72 bp | GATGCTGCTCTTCAGTGGAATCTGAGACAGACTCAGTaGCTTATGACCATATCAGGAAATTCAAGCAATAGA | + |
|
Preference number: 3 (lower is better) Translates to: DAALQWNLRQTQ*LMTISGNSSNR Trigger: TCTATTGCTTGAATTTCCTGATATGGTCATAAGCCACTGAGTCTGTCTCAGATTCCACTGAAGAGCAGCATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| 3UTR CCA 72 bp | AATGTGGTCATCATACTTTTGGATGCTGCTCTTCAGTaGAATCTGAGACAGACTCAGTGGCTTATGACCATA | + |
|
Preference number: 3 (lower is better) Translates to: NVVIILLDAALQ*NLRQTQWLMTI Trigger: TATGGTCATAAGCCACTGAGTCTGTCTCAGATTCCACTGAAGAGCAGCATCCAAAAGTATGATGACCACATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| 3UTR CCA 72 bp | CCTTCAAAAATAGAGAGGTCTTGGTGCTCATATGTCTaGAAAAGCTTGAAGCAACAAGACAGTTACCTGGAC | + |
|
Preference number: 3 (lower is better) Translates to: PSKIERSWCSYV*KSLKQQDSYLD Trigger: GTCCAGGTAACTGTCTTGTTGCTTCAAGCTTTTCCAGACATATGAGCACCAAGACCTCTCTATTTTTGAAGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| 3UTR TCA 72 bp | GACAACTTAGCTGACCTGCCTCTTTGTGGTTTTGTTTaGCCTTGGCAATTTTACAGATGGATTGACAACTGT | + |
|
Preference number: 3 (lower is better) Translates to: DNLADLPLCGFV*PWQFYRWIDNC Trigger: ACAGTTGTCAATCCATCTGTAAAATTGCCAAGGTCAAACAAAACCACAAAGAGGCAGGTCAGCTAAGTTGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| 3UTR GCA 72 bp | GGAAACACAGTTCCTTCAAAAATAGAGAGGTCTTGGTaGTCATATGTCTGGAAAAGCTTGAAGCAACAAGAC | + |
|
Preference number: 3 (lower is better) Translates to: GNTVPSKIERSW*SYVWKSLKQQD Trigger: GTCTTGTTGCTTCAAGCTTTTCCAGACATATGAGCACCAAGACCTCTCTATTTTTGAAGGAACTGTGTTTCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| 3UTR-3UTR CAA 90 bp | TTTAAGGTGAGTATGGTCTACACAGTGAGCTCCATGTCACTGAGAGTATGTAAGTGTATGATATGCTCATaGAAGTCCTGGTTCAATCCT | + |
|
Preference number: 3 (lower is better) Translates to: FKVSMVYTVSSMSLRVCKCMICS*KSWFNP Trigger: AGGATTGAACCAGGACTTCAATGAGCATATCATACA...CTTACATACTCTCAGTGACATGGAGCTCACTGTGTAGACCATACTCACCTTAAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| 3UTR CCA 72 bp | TATTCACAGGATTGTTTAGGTGCCATTTCTTCCACCTaGCTTACATTCTGTCCTCATAAAGTTAGTGAGACA | + |
|
Preference number: 3 (lower is better) Translates to: YSQDCLGAISST*LTFCPHKVSET Trigger: TGTCTCACTAACTTTATGAGGACAGAATGTAAGCCAGGTGGAAGAAATGGCACCTAAACAATCCTGTGAATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| 3UTR CCA 72 bp | AATTGTCAGTCTTCAAGGACAAGAACTGTTATAGACTaGTCATTCTCTACCCAAGATAAAACTCTCCCCTGT | + |
|
Preference number: 3 (lower is better) Translates to: NCQSSRTRTVID*SFSTQDKTLPC Trigger: ACAGGGGAGAGTTTTATCTTGGGTAGAGAATGACCAGTCTATAACAGTTCTTGTCCTTGAAGACTGACAATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| 3UTR CCA 72 bp | CCTAGGAAATGGATAATATTTAGGAACACTGAATCATaGTTCTGTCACTCACGCTCTATAGACCTGGAGAAA | + |
|
Preference number: 3 (lower is better) Translates to: PRKWIIFRNTES*FCHSRSIDLEK Trigger: TTTCTCCAGGTCTATAGAGCGTGAGTGACAGAACCATGATTCAGTGTTCCTAAATATTATCCATTTCCTAGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| 3UTR TCA 72 bp | CTTTATTGTCACGTCTTTACCATCTTTCTCTCTCCATaGTGCTCATCATCTCTCATTTTCCTCCTTCTAGAA | + |
|
Preference number: 3 (lower is better) Translates to: LYCHVFTIFLSP*CSSSLIFLLLE Trigger: TTCTAGAAGGAGGAAAATGAGAGATGATGAGCATCATGGAGAGAGAAAGATGGTAAAGACGTGACAATAAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| 3UTR TCA 72 bp | AGGGCAAAGTTGCTCCCTTTATACAACCATTTTCATTaGCACCGTCACAAGAAAGAGAAAGACATTACAAAG | + |
|
Preference number: 3 (lower is better) Translates to: RAKLLPLYNHFH*HRHKKEKDITK Trigger: CTTTGTAATGTCTTTCTCTTTCTTGTGACGGTGTCAATGAAAATGGTTGTATAAAGGGAGCAACTTTGCCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| 3UTR TCA 72 bp | CATACAAACATGTGCTCATGTGCATATGGGAGGATATaGCACAGTAAGATGATCTTTCTATGGAACTTGAAG | + |
|
Preference number: 3 (lower is better) Translates to: HTNMCSCAYGRI*HSKMIFLWNLK Trigger: CTTCAAGTTCCATAGAAAGATCATCTTACTGTGTCATATCCTCCCATATGCACATGAGCACATGTTTGTATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| 3UTR TCA 72 bp | TTATTATGTGTTTTTATCTATTTGGGTATCTATCACTaGGCTGTCCCCAAACTCACTATTGGCTCCTTCTCA | + |
|
Preference number: 3 (lower is better) Translates to: LLCVFIYLGIYH*AVPKLTIGSFS Trigger: TGAGAAGGAGCCAATAGTGAGTTTGGGGACAGCTCAGTGATAGATACCCAAATAGATAAAAACACATAATAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| 3UTR TCA 72 bp | TCATCAGATGTAATTGTTGGCTCAGAGACTGACTGCTaGAAAGCTCACATTTTAGAAAATTGGTTAGTGACT | + |
|
Preference number: 3 (lower is better) Translates to: SSDVIVGSETDC*KAHILENWLVT Trigger: AGTCACTAACCAATTTTCTAAAATGTGAGCTTTTCAGCAGTCAGTCTCTGAGCCAACAATTACATCTGATGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| 3UTR TCA 72 bp | GTATTTAAAGCAGTATTTGTGGTTGACCCTGATAGATaGCTGCTAAAATATGTACCATGCTTCTACACGTAC | + |
|
Preference number: 3 (lower is better) Translates to: VFKAVFVVDPDR*LLKYVPCFYTY Trigger: GTACGTGTAGAAGCATGGTACATATTTTAGCAGTCATCTATCAGGGTCAACCACAAATACTGCTTTAAATAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| 3UTR TCA 72 bp | ACAAGTAATTTATGTGGCATTACCTCAGTAGTGATGTaGGTGTATGATATGCTCATTGAAGTCCTGGTTCAA | + |
|
Preference number: 3 (lower is better) Translates to: TSNLCGITSVVM*VYDMLIEVLVQ Trigger: TTGAACCAGGACTTCAATGAGCATATCATACACTCACATCACTACTGAGGTAATGCCACATAAATTACTTGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| 3UTR TCA 72 bp | ACACAGACCATACTCTGTATGAAATCATTAGTGCTTTaGATGTTCAGCTCAAAAAGATACAATAAAGTGTCC | + |
|
Preference number: 3 (lower is better) Translates to: TQTILCMKSLVL*MFSSKRYNKVS Trigger: GGACACTTTATTGTATCTTTTTGAGCTGAACATTCAAAGCACTAATGATTTCATACAGAGTATGGTCTGTGT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| 3UTR TCA 72 bp | GTTTTTCTACAAAATGTCTTGTGTTGTTGGTTTGTTTaGATTGGAATCCAAACACAGACCATACTCTGTATG | + |
|
Preference number: 3 (lower is better) Translates to: VFLQNVLCCWFV*IGIQTQTILCM Trigger: CATACAGAGTATGGTCTGTGTTTGGATTCCAATTCAAACAAACCAACAACACAAGACATTTTGTAGAAAAAC 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| CDS-3UTR TCA 90 bp | CAGCTGTTCCTGCCAGCAAACATTTGCTGTGCCATCCTGGATTCTAACCCTCTGCCAGAGCCTGGCTGCTaGGTGCAGGTGAGCCTCGGT | + |
|
Preference number: 4 (lower is better) Translates to: QLFLPANICCAILDSNPLPEPGC*VQVSLG Trigger: ACCGAGGCTCACCTGCACTCAGCAGCCAGGCTCTGG...CAGAGGGTTAGAATCCAGGATGGCACAGCAAATGTTTGCTGGCAGGAACAGCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| CDS-3UTR CCA 90 bp | CAGCTGTTCCTGCCAGCAAACATTTGCTGTGCCATCCTGGATTCTAACCCTCTGCCAGAGAGGCTGCCCTaGCCCTCCTGCACAACCTTA | + |
|
Preference number: 4 (lower is better) Translates to: QLFLPANICCAILDSNPLPERLP*PSCTTL Trigger: TAAGGTTGTGCAGGAGGGCCAGGGCAGCCTCTCTGG...CAGAGGGTTAGAATCCAGGATGGCACAGCAAATGTTTGCTGGCAGGAACAGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| CDS-3UTR TCA 90 bp | CCTTTATTGTCACGTCTTTACCATCTTTCTCTCTCCATGATGCTCATCATCTCTGCTGCTGAGTGCAGGTaGGCCTCGGTCTGTCGCACC | + |
|
Preference number: 4 (lower is better) Translates to: PLLSRLYHLSLSMMLIISAAECR*ASVCRT Trigger: GGTGCGACAGACCGAGGCTCACCTGCACTCAGCAGC...AGAGATGATGAGCATCATGGAGAGAGAAAGATGGTAAAGACGTGACAATAAAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| CDS-3UTR GCA 90 bp | CCTTTATTGTCACGTCTTTACCATCTTTCTCTCTCCATGATGCTCATCATCTCTGCCACCCAGAGAGGCTaGCCTGGCCCTCCTGCACAA | + |
|
Preference number: 4 (lower is better) Translates to: PLLSRLYHLSLSMMLIISATQRG*PGPPAQ Trigger: TTGTGCAGGAGGGCCAGGGCAGCCTCTCTGGGTGGC...AGAGATGATGAGCATCATGGAGAGAGAAAGATGGTAAAGACGTGACAATAAAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| CDS-3UTR CCA 90 bp | TTCTCAACAGGCCTAATAGTTGTACCACAGAATAGATTTTCCAATGCAATCAATCGGGCTCCGCCGCCCTaGGCAGCAGCTCTGTGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: FSTGLIVVPQNRFSNAINRAPPP*AAALCR Trigger: CCTGCACAGAGCTGCTGCCCAGGGCGGCGGAGCCCG...ATTGATTGCATTGGAAAATCTATTCTGTGGTACAACTATTAGGCCTGTTGAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| 3UTR CAA 72 bp | AGCTTGAAGCAACAAGACAGTTACCTGGACCTTCTGTaGAGTCTGCTCTCCTGTCTGTACAACTCCTGTGCC | + |
|
Preference number: 4 (lower is better) Translates to: SLKQQDSYLDLL*SLLSCLYNSCA Trigger: GGCACAGGAGTTGTACAGACAGGAGAGCAGACTCAACAGAAGGTCCAGGTAACTGTCTTGTTGCTTCAAGCT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| CDS-3UTR CCA 90 bp | CCTTTATTGTCACGTCTTTACCATCTTTCTCTCTCCATGATGCTCATCATCTCTAGTCCCAGACCTGGGTaGCGTCCCTCCATCCAAAGC | + |
|
Preference number: 4 (lower is better) Translates to: PLLSRLYHLSLSMMLIISSPRPG*RPSIQS Trigger: GCTTTGGATGGAGGGACGCCACCCAGGTCTGGGACT...AGAGATGATGAGCATCATGGAGAGAGAAAGATGGTAAAGACGTGACAATAAAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| CDS-3UTR CCA 90 bp | AAGATAGTGTTAGTAAGGAGCTTACCACCACCTGTCCCCACTTGTTTATTATGTGACAGCTCATCCACCTaGAGCCCCAGGTCCTTTACC | + |
|
Preference number: 4 (lower is better) Translates to: KIVLVRSLPPPVPTCLLCDSSST*SPRSFT Trigger: GGTAAAGGACCTGGGGCTCCAGGTGGATGAGCTGTC...ACATAATAAACAAGTGGGGACAGGTGGTGGTAAGCTCCTTACTAACACTATCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| CDS-3UTR TCA 90 bp | GCTCTCAGCTGTTCCTGCCAGCAAACATTTGCTGTGCCATCCTGGATTCTAACCTTCACATCCATCACCTaGATTCTTACTGTAGATTTC | + |
|
Preference number: 4 (lower is better) Translates to: ALSCSCQQTFAVPSWILTFTSIT*ILTVDF Trigger: GAAATCTACAGTAAGAATTCAGGTGATGGATGTGAA...GGTTAGAATCCAGGATGGCACAGCAAATGTTTGCTGGCAGGAACAGCTGAGAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| 3UTR CAA 72 bp | GGGGAGCATTCTCTTAGTTCGCCCTCACATCCTTTATaGTCACGTCTTTACCATCTTTCTCTCTCCATGATG | + |
|
Preference number: 4 (lower is better) Translates to: GEHSLSSPSHPL*SRLYHLSLSMM Trigger: CATCATGGAGAGAGAAAGATGGTAAAGACGTGACAATAAAGGATGTGAGGGCGAACTAAGAGAATGCTCCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| CDS-3UTR TCA 90 bp | ACTCAGTGGCTTATGACCATATCAGGAAATTCAAGCAATAGAATAAGAGAGGAACAGAGTCTGTGGCGCTaGTGGTGCCTATGTGCAATG | + |
|
Preference number: 4 (lower is better) Translates to: TQWLMTISGNSSNRIREEQSLWR*WCLCAM Trigger: CATTGCACATAGGCACCATCAGCGCCACAGACTCTG...TTCCTCTCTTATTCTATTGCTTGAATTTCCTGATATGGTCATAAGCCACTGAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| 3UTR CAA 72 bp | GTATGGCCTGGTTGGAGGAAGTGTGTCATTGGAGCTTaGAGATTTCAAAACACTCACACCATTCCTAGAGTT | + |
|
Preference number: 4 (lower is better) Translates to: VWPGWRKCVIGA*RFQNTHTIPRV Trigger: AACTCTAGGAATGGTGTGAGTGTTTTGAAATCTCAAAGCTCCAATGACACACTTCCTCCAACCAGGCCATAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| 3UTR CAA 72 bp | AGAACTACTTGGAAAGGATTAGGAGGTATGGCCTGGTaGGAGGAAGTGTGTCATTGGAGCTTTGAGATTTCA | + |
|
Preference number: 4 (lower is better) Translates to: RTTWKGLGGMAW*EEVCHWSFEIS Trigger: TGAAATCTCAAAGCTCCAATGACACACTTCCTCCAACCAGGCCATACCTCCTAATCCTTTCCAAGTAGTTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| 3UTR CAA 72 bp | AGTATGAATGAGAATGCTTGCCATGGGCTTCTATGTTaGAATACTCGATCCCTACCTGGTAGAACTACTTGG | + |
|
Preference number: 4 (lower is better) Translates to: SMNENACHGLLC*NTRSLPGRTTW Trigger: CCAAGTAGTTCTACCAGGTAGGGATCGAGTATTCAAACATAGAAGCCCATGGCAAGCATTCTCATTCATACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| CDS-3UTR CCA 90 bp | AAGATAGTGTTAGTAAGGAGCTTACCACCACCTGTCCCCACTTGTTTATTATGTTTAATGCCCATGAGATaGTCAGGAAAGTGTCCCTCA | + |
|
Preference number: 4 (lower is better) Translates to: KIVLVRSLPPPVPTCLLCLMPMR*SGKCPS Trigger: TGAGGGACACTTTCCTGACCATCTCATGGGCATTAA...ACATAATAAACAAGTGGGGACAGGTGGTGGTAAGCTCCTTACTAACACTATCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| 3UTR CAA 72 bp | ATTATCTCACAGGCTTGCTTTCTCCTATTCACAGGATaGTTTAGGTGCCATTTCTTCCACCTGGCTTACATT | + |
|
Preference number: 4 (lower is better) Translates to: IISQACFLLFTG*FRCHFFHLAYI Trigger: AATGTAAGCCAGGTGGAAGAAATGGCACCTAAACAATCCTGTGAATAGGAGAAAGCAAGCCTGTGAGATAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| CDS-3UTR TCA 90 bp | ACTCAGTGGCTTATGACCATATCAGGAAATTCAAGCAATAGAATAAGAGAGGAAGCCTCAGAGTGTGCTTaGGACATTCCTAGGAAAACA | + |
|
Preference number: 4 (lower is better) Translates to: TQWLMTISGNSSNRIREEASECA*DIPRKT Trigger: TGTTTTCCTAGGAATGTCTCAAGCACACTCTGAGGC...TTCCTCTCTTATTCTATTGCTTGAATTTCCTGATATGGTCATAAGCCACTGAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| CDS-3UTR TCA 90 bp | ACTCAGTGGCTTATGACCATATCAGGAAATTCAAGCAATAGAATAAGAGAGGAATCTTTCCCAGGGAACTaGGGTTGTAAATTGGGGGAA | + |
|
Preference number: 4 (lower is better) Translates to: TQWLMTISGNSSNRIREESFPGN*GCKLGE Trigger: TTCCCCCAATTTACAACCTCAGTTCCCTGGGAAAGA...TTCCTCTCTTATTCTATTGCTTGAATTTCCTGATATGGTCATAAGCCACTGAGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| CDS-3UTR CCA 90 bp | CCTTTATTGTCACGTCTTTACCATCTTTCTCTCTCCATGATGCTCATCATCTCTACTGAGGTTGTAAATTaGGGGAAACTGGCTTCAAGA | + |
|
Preference number: 4 (lower is better) Translates to: PLLSRLYHLSLSMMLIISTEVVN*GKLASR Trigger: TCTTGAAGCCAGTTTCCCCCAATTTACAACCTCAGT...AGAGATGATGAGCATCATGGAGAGAGAAAGATGGTAAAGACGTGACAATAAAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| CDS-3UTR TCA 90 bp | GTCTCCTTATCTATAGTGTTGCCTCCAAAGGTTTTAGTCACTGAAATTTGTAAGATGGTAACGTGGAAATaGGAGTTCTGGCTTATCTCG | + |
|
Preference number: 4 (lower is better) Translates to: VSLSIVLPPKVLVTEICKMVTWK*EFWLIS Trigger: CGAGATAAGCCAGAACTCTCATTTCCACGTTACCAT...CTTACAAATTTCAGTGACTAAAACCTTTGGAGGCAACACTATAGATAAGGAGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| CDS-3UTR CCA 90 bp | AAGATAGTGTTAGTAAGGAGCTTACCACCACCTGTCCCCACTTGTTTATTATGTAAGCATGCTATTCTCTaGAACCGTCACTTCATAGAA | + |
|
Preference number: 4 (lower is better) Translates to: KIVLVRSLPPPVPTCLLCKHAIL*NRHFIE Trigger: TTCTATGAAGTGACGGTTCCAGAGAATAGCATGCTT...ACATAATAAACAAGTGGGGACAGGTGGTGGTAAGCTCCTTACTAACACTATCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| 3UTR CAA 72 bp | GTTAGGAAACACAGTTCCTTCAAAAATAGAGAGGTCTaGGTGCTCATATGTCTGGAAAAGCTTGAAGCAACA | + |
|
Preference number: 4 (lower is better) Translates to: VRKHSSFKNREV*VLICLEKLEAT Trigger: TGTTGCTTCAAGCTTTTCCAGACATATGAGCACCAAGACCTCTCTATTTTTGAAGGAACTGTGTTTCCTAAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| CDS-3UTR TCA 90 bp | TTCTCAACAGGCCTAATAGTTGTACCACAGAATAGATTTTCCAATGCAATCAATCTGGCTTCAAGAATCTaGACTCATTTGTCCCACTAC | + |
|
Preference number: 4 (lower is better) Translates to: FSTGLIVVPQNRFSNAINLASRI*THLSHY Trigger: GTAGTGGGACAAATGAGTTCAGATTCTTGAAGCCAG...ATTGATTGCATTGGAAAATCTATTCTGTGGTACAACTATTAGGCCTGTTGAGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
||
| CDS-3UTR CCA 90 bp | ACTCAGTGGCTTATGACCATATCAGGAAATTCAAGCAATAGAATAAGAGAGGAAATATCCTCTGATGCATaGGAAAAGGCGTACGATACT | + |
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Preference number: 4 (lower is better) Translates to: TQWLMTISGNSSNRIREEISSDA*EKAYDT Trigger: AGTATCGTACGCCTTTTCCCATGCATCAGAGGATAT...TTCCTCTCTTATTCTATTGCTTGAATTTCCTGATATGGTCATAAGCCACTGAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR CAA 72 bp | GAGAAAGTATGTACCTTTGTCTCCTTATCTATAGTGTaGCCTCCAAAGGTTTTAGTCACTGAAATTTGTAAG | + |
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Preference number: 4 (lower is better) Translates to: EKVCTFVSLSIV*PPKVLVTEICK Trigger: CTTACAAATTTCAGTGACTAAAACCTTTGGAGGCAACACTATAGATAAGGAGACAAAGGTACATACTTTCTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| 3UTR CAA 72 bp | CGTTTTTCTACAAAATGTCTTGTGTTGTTGGTTTGTTaGAATTGGAATCCAAACACAGACCATACTCTGTAT | + |
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Preference number: 4 (lower is better) Translates to: RFSTKCLVLLVC*NWNPNTDHTLY Trigger: ATACAGAGTATGGTCTGTGTTTGGATTCCAATTCAAACAAACCAACAACACAAGACATTTTGTAGAAAAACG 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| CDS-3UTR CAA 90 bp | GCTCTCAGCTGTTCCTGCCAGCAAACATTTGCTGTGCCATCCTGGATTCTAACCCATGGTATAGGAGGTTaGGGTGAAGGCAGGGGCATT | + |
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Preference number: 5 (lower is better) Translates to: ALSCSCQQTFAVPSWILTHGIGG*GEGRGI Trigger: AATGCCCCTGCCTTCACCCAAACCTCCTATACCATG...GGTTAGAATCCAGGATGGCACAGCAAATGTTTGCTGGCAGGAACAGCTGAGAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| CDS TCA 90 bp | TTTATGTTCAATTGCAAAGGCAGTTTATTATCACTAGAGGCCACTTaGGCCTCTCGTGCAGACAGCTCATCCACCTGGAGCCCCAGGTCC | + |
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Preference number: 5 (lower is better) Translates to: FMFNCKGSLLSLEAT*ASRADSSSTWSPRS Trigger: GGACCTGGGGCTCCAGGTGGATGAGCTGTCTGCACGAGAGGCTCAAGTGGCCTCTAGTGATAATAAACTGCCTTTGCAATTGAACATAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| CDS GCA 90 bp | TTGCAAAGGCAGTTTATTATCACTAGAGGCCACTTGAGCCTCTCGTaGAGACAGCTCATCCACCTGGAGCCCCAGGTCCTTTACCAAATT | + |
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Preference number: 5 (lower is better) Translates to: LQRQFIITRGHLSLS*RQLIHLEPQVLYQI Trigger: AATTTGGTAAAGGACCTGGGGCTCCAGGTGGATGAGCTGTCTGCACGAGAGGCTCAAGTGGCCTCTAGTGATAATAAACTGCCTTTGCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| CDS-3UTR CAA 90 bp | ACTACTTGGAAAGGATTAGGAGGTATGGCCTGGTTGGAGGAAGTGTGTCATTGGGAAGCAGGACTTGCCTaGTCTGCAGATAGAGTCCCT | + |
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Preference number: 5 (lower is better) Translates to: TTWKGLGGMAWLEEVCHWEAGLA*SADRVP Trigger: AGGGACTCTATCTGCAGACAAGGCAAGTCCTGCTTC...CCAATGACACACTTCCTCCAACCAGGCCATACCTCCTAATCCTTTCCAAGTAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| CDS-3UTR CAA 90 bp | AAGATAGTGTTAGTAAGGAGCTTACCACCACCTGTCCCCACTTGTTTATTATGTGCGAACAGCTGCCCGTaGTCAGCGTTAATGGAGATT | + |
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Preference number: 5 (lower is better) Translates to: KIVLVRSLPPPVPTCLLCANSCP*SALMEI Trigger: AATCTCCATTAACGCTGACAACGGGCAGCTGTTCGC...ACATAATAAACAAGTGGGGACAGGTGGTGGTAAGCTCCTTACTAACACTATCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| CDS-3UTR CAA 90 bp | GTCTCCTTATCTATAGTGTTGCCTCCAAAGGTTTTAGTCACTGAAATTTGTAAGAAAGAGAAGCAGGACTaGCCTTGTCTGCAGATAGAG | + |
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Preference number: 5 (lower is better) Translates to: VSLSIVLPPKVLVTEICKKEKQD*PCLQIE Trigger: CTCTATCTGCAGACAAGGCAAGTCCTGCTTCTCTTT...CTTACAAATTTCAGTGACTAAAACCTTTGGAGGCAACACTATAGATAAGGAGAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| CDS-3UTR CAA 90 bp | TTCTCAACAGGCCTAATAGTTGTACCACAGAATAGATTTTCCAATGCAATCAATAAGAATACGGGGGAGTaGTCATTTACATCCGTGACC | + |
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Preference number: 5 (lower is better) Translates to: FSTGLIVVPQNRFSNAINKNTGE*SFTSVT Trigger: GGTCACGGATGTAAATGACAACTCCCCCGTATTCTT...ATTGATTGCATTGGAAAATCTATTCTGTGGTACAACTATTAGGCCTGTTGAGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| CDS-3UTR CAA 90 bp | GTCTCCTTATCTATAGTGTTGCCTCCAAAGGTTTTAGTCACTGAAATTTGTAAGTGCAATGCAGGGCTGTaGTTCTCATGGAAAAACATG | + |
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Preference number: 5 (lower is better) Translates to: VSLSIVLPPKVLVTEICKCNAGL*FSWKNM Trigger: CATGTTTTTCCATGAGAACAACAGCCCTGCATTGCA...CTTACAAATTTCAGTGACTAAAACCTTTGGAGGCAACACTATAGATAAGGAGAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| CDS CCA 90 bp | GAATGTTCATTAATTGCAAATGTTTTTCGAATATCCTCTGATGCATaGGAAAAGGCGTACGATACTTCACCATTAATTCCTGAGTCTAAA | + |
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Preference number: 5 (lower is better) Translates to: ECSLIANVFRISSDA*EKAYDTSPLIPESK Trigger: TTTAGACTCAGGAATTAATGGTGAAGTATCGTACGCCTTTTCCCATGCATCAGAGGATATTCGAAAAACATTTGCAATTAATGAACATTC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| CDS GCA 72 bp | GGTATCCGGGCTCCGCCGCCCTGGGCAGCAGCTCTGTaGAGGGAGCAGAGGCGTTCTGCATCGGGTAGAGCA | + |
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Preference number: 6 (lower is better) Translates to: GIRAPPPWAAAL*REQRRSASGRA Trigger: TGCTCTACCCGATGCAGAACGCCTCTGCTCCCTGCACAGAGCTGCTGCCCAGGGCGGCGGAGCCCGGATACC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| CDS GCA 72 bp | CAGTACAGCCACCCAGAGAGGCTGCCCTGGCCCTCCTaGACAACCTTACTCCCACAAACAGCATTACAGAGA | + |
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Preference number: 6 (lower is better) Translates to: QYSHPERLPWPS*TTLLPQTALQR Trigger: TCTCTGTAATGCTGTTTGTGGGAGTAAGGTTGTGCAGGAGGGCCAGGGCAGCCTCTCTGGGTGGCTGTACTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| CDS GCA 72 bp | CAGTTTATTATCACTAGAGGCCACTTGAGCCTCTCGTaGAGACAGCTCATCCACCTGGAGCCCCAGGTCCTT | + |
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Preference number: 6 (lower is better) Translates to: QFIITRGHLSLS*RQLIHLEPQVL Trigger: AAGGACCTGGGGCTCCAGGTGGATGAGCTGTCTGCACGAGAGGCTCAAGTGGCCTCTAGTGATAATAAACTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| CDS CCA 72 bp | TGGGACAGAGTTCCCGCACTGTTAATGCCCATGAGATaGTCAGGAAAGTGTCCCTCAGGCACAGTACAGCCA | + |
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Preference number: 6 (lower is better) Translates to: WDRVPALLMPMR*SGKCPSGTVQP Trigger: TGGCTGTACTGTGCCTGAGGGACACTTTCCTGACCATCTCATGGGCATTAACAGTGCGGGAACTCTGTCCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| CDS CAA 90 bp | ATTTATGTTCAATTGCAAAGGCAGTTTATTATCACTAGAGGCCACTaGAGCCTCTCGTGCAGACAGCTCATCCACCTGGAGCCCCAGGTC | + |
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Preference number: 6 (lower is better) Translates to: IYVQLQRQFIITRGH*SLSCRQLIHLEPQV Trigger: GACCTGGGGCTCCAGGTGGATGAGCTGTCTGCACGAGAGGCTCAAGTGGCCTCTAGTGATAATAAACTGCCTTTGCAATTGAACATAAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| CDS CAA 90 bp | GTCCAGCGGTTCACTAAGGAGCAAATCTCCTGTATTTATGTTCAATaGCAAAGGCAGTTTATTATCACTAGAGGCCACTTGAGCCTCTCG | + |
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Preference number: 6 (lower is better) Translates to: VQRFTKEQISCIYVQ*QRQFIITRGHLSLS Trigger: CGAGAGGCTCAAGTGGCCTCTAGTGATAATAAACTGCCTTTGCAATTGAACATAAATACAGGAGATTTGCTCCTTAGTGAACCGCTGGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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| CDS CAA 90 bp | CCCTCCGGAATAGTACACACCATCTTGCCATTCTCACCCGAGTCCTaGTCTCGAATGCTAAAAATCATAACTAAAGTCTCTGCGGTATTT | + |
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Preference number: 6 (lower is better) Translates to: PSGIVHTILPFSPES*SRMLKIITKVSAVF Trigger: AAATACCGCAGAGACTTTAGTTATGATTTTTAGCATTCGAGACAAGGACTCGGGTGAGAATGGCAAGATGGTGTGTACTATTCCGGAGGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059571.7 |
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