Pregenerated sensors for PCDHB18 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048347Ensembl transcript IDs: ENSMUST00000055949.4
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGCAATGAAGTAGCCATGTTTAGAAAGCAGCATGGGGTACTTGCTTaGAAAAGGAAGGAAACAAGTGGGACACAAGAGTTAGGAATGATT | + |
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Preference number: 1 (lower is better) Translates to: GNEVAMFRKQHGVLA*KRKETSGTQELGMI Trigger: AATCATTCCTAACTCTTGTGTCCCACTTGTTTCCTTCCTTTTCCAAGCAAGTACCCCATGCTGCTTTCTAAACATGGCTACTTCATTGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| 3UTR CCA 90 bp | TTGCCATATATGTCACCAAGAATGAACATAAAACTGAGCTCTTGCTaGGTGGTAGTGATACATAAGTTTAATCCCAGCATTCGGGCAGCA | + |
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Preference number: 1 (lower is better) Translates to: LPYMSPRMNIKLSSC*VVVIHKFNPSIRAA Trigger: TGCTGCCCGAATGCTGGGATTAAACTTATGTATCACTACCACCCAGCAAGAGCTCAGTTTTATGTTCATTCTTGGTGACATATATGGCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| 3UTR GCA 90 bp | AATTTGCCATATATGTCACCAAGAATGAACATAAAACTGAGCTCTTaGTGGGTGGTAGTGATACATAAGTTTAATCCCAGCATTCGGGCA | + |
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Preference number: 1 (lower is better) Translates to: NLPYMSPRMNIKLSS*WVVVIHKFNPSIRA Trigger: TGCCCGAATGCTGGGATTAAACTTATGTATCACTACCACCCAGCAAGAGCTCAGTTTTATGTTCATTCTTGGTGACATATATGGCAAATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| 3UTR-3UTR CCA 90 bp | CAAAGAAATAGCCACAGCTACAGTATTCTCAGACTACTGAGGGTAAGTTTTCCAAAACTGAGCTCTTGCTaGGTGGTAGTGATACATAAG | + |
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Preference number: 2 (lower is better) Translates to: QRNSHSYSILRLLRVSFPKLSSC*VVVIHK Trigger: CTTATGTATCACTACCACCCAGCAAGAGCTCAGTTT...TGGAAAACTTACCCTCAGTAGTCTGAGAATACTGTAGCTGTGGCTATTTCTTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| 3UTR-3UTR CCA 90 bp | CAAAGAAATAGCCACAGCTACAGTATTCTCAGACTACTGAGGGTAAGTTTTCCAAAGGAAGGAAACAAGTaGGACACAAGAGTTAGGAAT | + |
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Preference number: 2 (lower is better) Translates to: QRNSHSYSILRLLRVSFPKEGNK*DTRVRN Trigger: ATTCCTAACTCTTGTGTCCCACTTGTTTCCTTCCTT...TGGAAAACTTACCCTCAGTAGTCTGAGAATACTGTAGCTGTGGCTATTTCTTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| 3UTR-3UTR GCA 90 bp | GAGCAGTGCAAGAAAGTAGAACATGGACCAAATAGAGTGAAAATACAAAATGAAAGTGAGTATAAAGCATaGCTGGCTGGAGATAGAGCT | + |
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Preference number: 2 (lower is better) Translates to: EQCKKVEHGPNRVKIQNESEYKA*LAGDRA Trigger: AGCTCTATCTCCAGCCAGGCATGCTTTATACTCACT...TTCATTTTGTATTTTCACTCTATTTGGTCCATGTTCTACTTTCTTGCACTGCTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| 3UTR-3UTR CCA 90 bp | CAAAGAAATAGCCACAGCTACAGTATTCTCAGACTACTGAGGGTAAGTTTTCCAACCATGCAAAAGGCTTaGTCAATTCTTAGCAACAAA | + |
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Preference number: 2 (lower is better) Translates to: QRNSHSYSILRLLRVSFPTMQKA*SILSNK Trigger: TTTGTTGCTAAGAATTGACCAAGCCTTTTGCATGGT...TGGAAAACTTACCCTCAGTAGTCTGAGAATACTGTAGCTGTGGCTATTTCTTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| 3UTR-3UTR GCA 90 bp | GAGCAGTGCAAGAAAGTAGAACATGGACCAAATAGAGTGAAAATACAAAATGAAGAGGTCAGCCTGGTCTaGAGAACTAATTTTAGGATA | + |
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Preference number: 2 (lower is better) Translates to: EQCKKVEHGPNRVKIQNEEVSLV*RTNFRI Trigger: TATCCTAAAATTAGTTCTGCAGACCAGGCTGACCTC...TTCATTTTGTATTTTCACTCTATTTGGTCCATGTTCTACTTTCTTGCACTGCTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| 3UTR-3UTR CCA 90 bp | GAGCAGTGCAAGAAAGTAGAACATGGACCAAATAGAGTGAAAATACAAAATGAAAGTATAAAGCATGCCTaGCTGGAGATAGAGCTCTAT | + |
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Preference number: 2 (lower is better) Translates to: EQCKKVEHGPNRVKIQNESIKHA*LEIELY Trigger: ATAGAGCTCTATCTCCAGCCAGGCATGCTTTATACT...TTCATTTTGTATTTTCACTCTATTTGGTCCATGTTCTACTTTCTTGCACTGCTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| 3UTR-3UTR GCA 90 bp | GAGCAGTGCAAGAAAGTAGAACATGGACCAAATAGAGTGAAAATACAAAATGAATCTCCTAAGTGCCTCTaGATCTATTTCAATGAAATT | + |
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Preference number: 2 (lower is better) Translates to: EQCKKVEHGPNRVKIQNESPKCL*IYFNEI Trigger: AATTTCATTGAAATAGATGCAGAGGCACTTAGGAGA...TTCATTTTGTATTTTCACTCTATTTGGTCCATGTTCTACTTTCTTGCACTGCTC 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| 3UTR CCA 72 bp | GAGTATAAAGCATGCCTGGCTGGAGATAGAGCTCTATaGTGGAGCATTTTCTTACCATGCAAAAGGCTTGGT | + |
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Preference number: 3 (lower is better) Translates to: EYKACLAGDRAL*WSIFLPCKRLG Trigger: ACCAAGCCTTTTGCATGGTAAGAAAATGCTCCACCATAGAGCTCTATCTCCAGCCAGGCATGCTTTATACTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| 3UTR CCA 72 bp | TATAAAGCATGCCTGGCTGGAGATAGAGCTCTATGGTaGAGCATTTTCTTACCATGCAAAAGGCTTGGTCAA | + |
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Preference number: 3 (lower is better) Translates to: YKACLAGDRALW*SIFLPCKRLGQ Trigger: TTGACCAAGCCTTTTGCATGGTAAGAAAATGCTCCACCATAGAGCTCTATCTCCAGCCAGGCATGCTTTATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| 3UTR CCA 72 bp | GTAGCCATGTTTAGAAAGCAGCATGGGGTACTTGCTTaGAAAAGGAAGGAAACAAGTGGGACACAAGAGTTA | + |
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Preference number: 3 (lower is better) Translates to: VAMFRKQHGVLA*KRKETSGTQEL Trigger: TAACTCTTGTGTCCCACTTGTTTCCTTCCTTTTCCAAGCAAGTACCCCATGCTGCTTTCTAAACATGGCTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| 3UTR TCA 72 bp | CAGAGAGTGCAGCTCAAGGTAACTCACTGCTTTGATTaGTCGCTTAATATGGAAAGAGAGGAGCAGAAAAAT | + |
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Preference number: 3 (lower is better) Translates to: QRVQLKVTHCFD*SLNMEREEQKN Trigger: ATTTTTCTGCTCCTCTCTTTCCATATTAAGCGATCAATCAAAGCAGTGAGTTACCTTGAGCTGCACTCTCTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| 3UTR-3UTR CAA 90 bp | GAGCAGTGCAAGAAAGTAGAACATGGACCAAATAGAGTGAAAATACAAAATGAAAGCAGCATGGGGTACTaGCTTGGAAAAGGAAGGAAA | + |
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Preference number: 3 (lower is better) Translates to: EQCKKVEHGPNRVKIQNESSMGY*LGKGRK Trigger: TTTCCTTCCTTTTCCAAGCAAGTACCCCATGCTGCT...TTCATTTTGTATTTTCACTCTATTTGGTCCATGTTCTACTTTCTTGCACTGCTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| 3UTR GCA 72 bp | TATATGTCACCAAGAATGAACATAAAACTGAGCTCTTaGTGGGTGGTAGTGATACATAAGTTTAATCCCAGC | + |
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Preference number: 3 (lower is better) Translates to: YMSPRMNIKLSS*WVVVIHKFNPS Trigger: GCTGGGATTAAACTTATGTATCACTACCACCCAGCAAGAGCTCAGTTTTATGTTCATTCTTGGTGACATATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| CDS-3UTR GCA 90 bp | ATAAAGCATGCCTGGCTGGAGATAGAGCTCTATGGTGGAGCATTTTCTTACCATCCGCCCTGGCCCTCCTaGACAGTCTCACCCCCACAA | + |
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Preference number: 4 (lower is better) Translates to: IKHAWLEIELYGGAFSYHPPWPS*TVSPPQ Trigger: TTGTGGGGGTGAGACTGTGCAGGAGGGCCAGGGCGG...ATGGTAAGAAAATGCTCCACCATAGAGCTCTATCTCCAGCCAGGCATGCTTTAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| CDS-3UTR GCA 90 bp | CAAAGAAATAGCCACAGCTACAGTATTCTCAGACTACTGAGGGTAAGTTTTCCACAGGTAGCCGGGCTCTaGGGTCCTGGGCAGCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: QRNSHSYSILRLLRVSFPQVAGL*GPGQQL Trigger: GAGCTGCTGCCCAGGACCGCAGAGCCCGGCTACCTG...TGGAAAACTTACCCTCAGTAGTCTGAGAATACTGTAGCTGTGGCTATTTCTTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| CDS-3UTR GCA 90 bp | TTAAAAGTGAGTATAAAGCATGCCTGGCTGGAGATAGAGCTCTATGGTGGAGCATCCACCAGCAGCACCTaGAGTGTGACACTGGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: LKVSIKHAWLEIELYGGASTSST*SVTLAE Trigger: CTCTGCCAGTGTCACACTGCAGGTGCTGCTGGTGGA...TGCTCCACCATAGAGCTCTATCTCCAGCCAGGCATGCTTTATACTCACTTTTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| CDS-3UTR CCA 90 bp | ATAAAGCATGCCTGGCTGGAGATAGAGCTCTATGGTGGAGCATTTTCTTACCATCCTCTTCCCCTTGAGTaGGATTGTGCGCCACCTCTG | + |
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Preference number: 4 (lower is better) Translates to: IKHAWLEIELYGGAFSYHPLPLE*DCAPPL Trigger: CAGAGGTGGCGCACAATCCCACTCAAGGGGAAGAGG...ATGGTAAGAAAATGCTCCACCATAGAGCTCTATCTCCAGCCAGGCATGCTTTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| CDS-3UTR GCA 90 bp | ATAAAGCATGCCTGGCTGGAGATAGAGCTCTATGGTGGAGCATTTTCTTACCATCACCCTAGTTCTCTTTaGAGCCAGTGCTTCCACCCC | + |
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Preference number: 4 (lower is better) Translates to: IKHAWLEIELYGGAFSYHHPSSL*SQCFHP Trigger: GGGGTGGAAGCACTGGCTGCAAAGAGAACTAGGGTG...ATGGTAAGAAAATGCTCCACCATAGAGCTCTATCTCCAGCCAGGCATGCTTTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| CDS-3UTR GCA 90 bp | TTAAAAGTGAGTATAAAGCATGCCTGGCTGGAGATAGAGCTCTATGGTGGAGCAAGACTGAACTCTGGCTaGCCCTCCCAATCCAGAGCT | + |
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Preference number: 4 (lower is better) Translates to: LKVSIKHAWLEIELYGGARLNSG*PSQSRA Trigger: AGCTCTGGATTGGGAGGGGCAGCCAGAGTTCAGTCT...TGCTCCACCATAGAGCTCTATCTCCAGCCAGGCATGCTTTATACTCACTTTTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| CDS-3UTR TCA 90 bp | TTAAAAGTGAGTATAAAGCATGCCTGGCTGGAGATAGAGCTCTATGGTGGAGCACGGGGGCGTTGTCATTaGTATCAGATACCTGTACTC | + |
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Preference number: 4 (lower is better) Translates to: LKVSIKHAWLEIELYGGARGRCH*YQIPVL Trigger: GAGTACAGGTATCTGATATCAATGACAACGCCCCCG...TGCTCCACCATAGAGCTCTATCTCCAGCCAGGCATGCTTTATACTCACTTTTAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| CDS-3UTR TCA 90 bp | GAGCAGTGCAAGAAAGTAGAACATGGACCAAATAGAGTGAAAATACAAAATGAACTAGAGCCTGGCTGCTaGGCTCAGGTGAGCCTCGGT | + |
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Preference number: 4 (lower is better) Translates to: EQCKKVEHGPNRVKIQNELEPGC*AQVSLG Trigger: ACCGAGGCTCACCTGAGCTCAGCAGCCAGGCTCTAG...TTCATTTTGTATTTTCACTCTATTTGGTCCATGTTCTACTTTCTTGCACTGCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| CDS-3UTR GCA 90 bp | TTAAAAGTGAGTATAAAGCATGCCTGGCTGGAGATAGAGCTCTATGGTGGAGCATGGTGTAGTTTTGGATaGCATTCCGTCCGCCATCTG | + |
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Preference number: 4 (lower is better) Translates to: LKVSIKHAWLEIELYGGAWCSFG*HSVRHL Trigger: CAGATGGCGGACGGAATGGCATCCAAAACTACACCA...TGCTCCACCATAGAGCTCTATCTCCAGCCAGGCATGCTTTATACTCACTTTTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| CDS-3UTR CCA 90 bp | AATGCAGGAGATAGATGCATGAAACTGCCAAAAACGGACTCAGTGAAAGTTAAATCTGTGGCACCCACGTaGAACTCGAAGGCCTGTAAG | + |
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Preference number: 4 (lower is better) Translates to: NAGDRCMKLPKTDSVKVKSVAPT*NSKACK Trigger: CTTACAGGCCTTCGAGTTCCACGTGGGTGCCACAGA...TTTAACTTTCACTGAGTCCGTTTTTGGCAGTTTCATGCATCTATCTCCTGCATT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| CDS-3UTR TCA 90 bp | TTAAAAGTGAGTATAAAGCATGCCTGGCTGGAGATAGAGCTCTATGGTGGAGCAAGCAAATCTCCAGTGTaGGAATCCAGAAACAAGTGC | + |
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Preference number: 4 (lower is better) Translates to: LKVSIKHAWLEIELYGGASKSPV*ESRNKC Trigger: GCACTTGTTTCTGGATTCTCACACTGGAGATTTGCT...TGCTCCACCATAGAGCTCTATCTCCAGCCAGGCATGCTTTATACTCACTTTTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| CDS-3UTR TCA 90 bp | ATAAAGCATGCCTGGCTGGAGATAGAGCTCTATGGTGGAGCATTTTCTTACCATCCCCAGAGAAAGGATTaGTTTGAAAGGTTGCTCGAA | + |
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Preference number: 4 (lower is better) Translates to: IKHAWLEIELYGGAFSYHPQRKD*FERLLE Trigger: TTCGAGCAACCTTTCAAATCAATCCTTTCTCTGGGG...ATGGTAAGAAAATGCTCCACCATAGAGCTCTATCTCCAGCCAGGCATGCTTTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| CDS-3UTR TCA 90 bp | GAGCAGTGCAAGAAAGTAGAACATGGACCAAATAGAGTGAAAATACAAAATGAACAGAGTCTGTGGCGCTaGTGGTGCCTATGTGCATGG | + |
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Preference number: 4 (lower is better) Translates to: EQCKKVEHGPNRVKIQNEQSLWR*WCLCAW Trigger: CCATGCACATAGGCACCATCAGCGCCACAGACTCTG...TTCATTTTGTATTTTCACTCTATTTGGTCCATGTTCTACTTTCTTGCACTGCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| CDS-3UTR CCA 90 bp | CAAAGAAATAGCCACAGCTACAGTATTCTCAGACTACTGAGGGTAAGTTTTCCAGACAACAAGGCCTATTaGACTGTTTTCTGGAGCCTG | + |
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Preference number: 4 (lower is better) Translates to: QRNSHSYSILRLLRVSFPDNKAY*TVFWSL Trigger: CAGGCTCCAGAAAACAGTCCAATAGGCCTTGTTGTC...TGGAAAACTTACCCTCAGTAGTCTGAGAATACTGTAGCTGTGGCTATTTCTTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| CDS-3UTR TCA 90 bp | CAAAGAAATAGCCACAGCTACAGTATTCTCAGACTACTGAGGGTAAGTTTTCCACCAGTTTCTCATTTGTaGGCAAATCTCCAGTGTGAG | + |
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Preference number: 4 (lower is better) Translates to: QRNSHSYSILRLLRVSFPPVSHL*ANLQCE Trigger: CTCACACTGGAGATTTGCTCACAAATGAGAAACTGG...TGGAAAACTTACCCTCAGTAGTCTGAGAATACTGTAGCTGTGGCTATTTCTTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| CDS-3UTR TCA 90 bp | ATAAAGCATGCCTGGCTGGAGATAGAGCTCTATGGTGGAGCATTTTCTTACCATGAGAAAGGATTGATTTaGAAGGTTGCTCGAATATCC | + |
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Preference number: 4 (lower is better) Translates to: IKHAWLEIELYGGAFSYHEKGLI*KVARIS Trigger: GGATATTCGAGCAACCTTTCAAATCAATCCTTTCTC...ATGGTAAGAAAATGCTCCACCATAGAGCTCTATCTCCAGCCAGGCATGCTTTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| CDS-3UTR CCA 90 bp | ATAAAGCATGCCTGGCTGGAGATAGAGCTCTATGGTGGAGCATTTTCTTACCATTATTGGACTGTTTTCTaGAGCCTGGATTTCATACAG | + |
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Preference number: 4 (lower is better) Translates to: IKHAWLEIELYGGAFSYHYWTVF*SLDFIQ Trigger: CTGTATGAAATCCAGGCTCCAGAAAACAGTCCAATA...ATGGTAAGAAAATGCTCCACCATAGAGCTCTATCTCCAGCCAGGCATGCTTTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| CDS-3UTR GCA 90 bp | TTAAAAGTGAGTATAAAGCATGCCTGGCTGGAGATAGAGCTCTATGGTGGAGCAATTGATTTGAAAGGTTaGTCGAATATCCTCAGAAGC | + |
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Preference number: 4 (lower is better) Translates to: LKVSIKHAWLEIELYGGAIDLKG*SNILRS Trigger: GCTTCTGAGGATATTCGAGCAACCTTTCAAATCAAT...TGCTCCACCATAGAGCTCTATCTCCAGCCAGGCATGCTTTATACTCACTTTTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| CDS-3UTR CCA 90 bp | CAAAGAAATAGCCACAGCTACAGTATTCTCAGACTACTGAGGGTAAGTTTTCCATTCTTGGGGAAACTGTaGGGCATTATCATTGATGTC | + |
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Preference number: 4 (lower is better) Translates to: QRNSHSYSILRLLRVSFPFLGKL*GIIIDV Trigger: GACATCAATGATAATGCCCCACAGTTTCCCCAAGAA...TGGAAAACTTACCCTCAGTAGTCTGAGAATACTGTAGCTGTGGCTATTTCTTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| CDS-3UTR TCA 90 bp | AATGCAGGAGATAGATGCATGAAACTGCCAAAAACGGACTCAGTGAAAGTTAAATCGATTTCAAGAACTTaGAATCACTGGTACCAGAGG | + |
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Preference number: 4 (lower is better) Translates to: NAGDRCMKLPKTDSVKVKSISRT*NHWYQR Trigger: CCTCTGGTACCAGTGATTTCAAGTTCTTGAAATCGA...TTTAACTTTCACTGAGTCCGTTTTTGGCAGTTTCATGCATCTATCTCCTGCATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| CDS-3UTR GCA 90 bp | CAAAGAAATAGCCACAGCTACAGTATTCTCAGACTACTGAGGGTAAGTTTTCCACGAATAGGATATTTCTaGATTGACTCCAGAGTCTAC | + |
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Preference number: 4 (lower is better) Translates to: QRNSHSYSILRLLRVSFPRIGYF*IDSRVY Trigger: GTAGACTCTGGAGTCAATGCAGAAATATCCTATTCG...TGGAAAACTTACCCTCAGTAGTCTGAGAATACTGTAGCTGTGGCTATTTCTTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| CDS-3UTR TCA 90 bp | AATGCAGGAGATAGATGCATGAAACTGCCAAAAACGGACTCAGTGAAAGTTAAAGTGGGGCATTATCATTaGTGTCCAAAACCAGAATAT | + |
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Preference number: 4 (lower is better) Translates to: NAGDRCMKLPKTDSVKVKVGHYH*CPKPEY Trigger: ATATTCTGGTTTTGGACATCAATGATAATGCCCCAC...TTTAACTTTCACTGAGTCCGTTTTTGGCAGTTTCATGCATCTATCTCCTGCATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| CDS-3UTR TCA 90 bp | GAGCAGTGCAAGAAAGTAGAACATGGACCAAATAGAGTGAAAATACAAAATGAAGTCCTGGAATATGGGTaGGTGATCATTTATATCCAG | + |
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Preference number: 4 (lower is better) Translates to: EQCKKVEHGPNRVKIQNEVLEYG*VIIYIQ Trigger: CTGGATATAAATGATCACTCACCCATATTCCAGGAC...TTCATTTTGTATTTTCACTCTATTTGGTCCATGTTCTACTTTCTTGCACTGCTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| CDS-3UTR GCA 90 bp | GAGCAGTGCAAGAAAGTAGAACATGGACCAAATAGAGTGAAAATACAAAATGAAAAGAGAAATAGCACTTaGCTTTGTCTGGAGACACAT | + |
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Preference number: 4 (lower is better) Translates to: EQCKKVEHGPNRVKIQNEKRNST*LCLETH Trigger: ATGTGTCTCCAGACAAAGGCAAGTGCTATTTCTCTT...TTCATTTTGTATTTTCACTCTATTTGGTCCATGTTCTACTTTCTTGCACTGCTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| CDS-3UTR CCA 90 bp | GAGCAGTGCAAGAAAGTAGAACATGGACCAAATAGAGTGAAAATACAAAATGAAATTTCATACAGTTCTTaGGGAAACTGTGGGGCATTA | + |
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Preference number: 4 (lower is better) Translates to: EQCKKVEHGPNRVKIQNEISYSS*GNCGAL Trigger: TAATGCCCCACAGTTTCCCCAAGAACTGTATGAAAT...TTCATTTTGTATTTTCACTCTATTTGGTCCATGTTCTACTTTCTTGCACTGCTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| CDS-3UTR CAA 90 bp | ATAAAGCATGCCTGGCTGGAGATAGAGCTCTATGGTGGAGCATTTTCTTACCATTCCCAATCCAGAGCTTaGTCTAGCACAAGCTCAGGA | + |
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Preference number: 5 (lower is better) Translates to: IKHAWLEIELYGGAFSYHSQSRA*SSTSSG Trigger: TCCTGAGCTTGTGCTAGACAAAGCTCTGGATTGGGA...ATGGTAAGAAAATGCTCCACCATAGAGCTCTATCTCCAGCCAGGCATGCTTTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| CDS-3UTR CAA 90 bp | ATAAAGCATGCCTGGCTGGAGATAGAGCTCTATGGTGGAGCATTTTCTTACCATCTTGATTGCAAACAGTaGCCCGTTGTCAGCATTGAT | + |
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Preference number: 5 (lower is better) Translates to: IKHAWLEIELYGGAFSYHLDCKQ*PVVSID Trigger: ATCAATGCTGACAACGGGCAACTGTTTGCAATCAAG...ATGGTAAGAAAATGCTCCACCATAGAGCTCTATCTCCAGCCAGGCATGCTTTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| CDS-3UTR CAA 90 bp | CAAAGAAATAGCCACAGCTACAGTATTCTCAGACTACTGAGGGTAAGTTTTCCAGATTTCATACAGTTCTaGGGGAAACTGTGGGGCATT | + |
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Preference number: 5 (lower is better) Translates to: QRNSHSYSILRLLRVSFPDFIQF*GKLWGI Trigger: AATGCCCCACAGTTTCCCCAAGAACTGTATGAAATC...TGGAAAACTTACCCTCAGTAGTCTGAGAATACTGTAGCTGTGGCTATTTCTTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| CDS-3UTR CAA 90 bp | CAAAGAAATAGCCACAGCTACAGTATTCTCAGACTACTGAGGGTAAGTTTTCCATTTCTAATCGAAATGTaGTTCCCACAGCTGTGTTTT | + |
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Preference number: 5 (lower is better) Translates to: QRNSHSYSILRLLRVSFPFLIEM*FPQLCF Trigger: AAAACACAGCTGTGGGAACAACATTTCGATTAGAAA...TGGAAAACTTACCCTCAGTAGTCTGAGAATACTGTAGCTGTGGCTATTTCTTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| CDS-3UTR CAA 90 bp | AATGCAGGAGATAGATGCATGAAACTGCCAAAAACGGACTCAGTGAAAGTTAAATTCTCAACAACTTCGTaGACAAGTGATGACATGATC | + |
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Preference number: 5 (lower is better) Translates to: NAGDRCMKLPKTDSVKVKFSTTS*TSDDMI Trigger: GATCATGTCATCACTTGTCAACGAAGTTGTTGAGAA...TTTAACTTTCACTGAGTCCGTTTTTGGCAGTTTCATGCATCTATCTCCTGCATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| CDS-3UTR CAA 90 bp | GAGCAGTGCAAGAAAGTAGAACATGGACCAAATAGAGTGAAAATACAAAATGAAATCGATTTCAAGAACTaGAAATCACTGGTACCAGAG | + |
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Preference number: 5 (lower is better) Translates to: EQCKKVEHGPNRVKIQNEIDFKN*KSLVPE Trigger: CTCTGGTACCAGTGATTTCAAGTTCTTGAAATCGAT...TTCATTTTGTATTTTCACTCTATTTGGTCCATGTTCTACTTTCTTGCACTGCTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| CDS TCA 72 bp | CATATTGGTAGTTCTGGGACAGTGTTCCTGTACCGCTaGCGTCCACAAGGTGTCCAGGAAAGTGTCCCTCTG | + |
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Preference number: 6 (lower is better) Translates to: HIGSSGTVFLYR*RPQGVQESVPL Trigger: CAGAGGGACACTTTCCTGGACACCTTGTGGACGTCAGCGGTACAGGAACACTGTCCCAGAACTACCAATATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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| CDS GCA 72 bp | AAACACAGACCCCCGAGCAGGAAGAGAAATAGCACTTaGCTTTGTCTGGAGACACATGATCCTCTGGCTGCC | + |
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Preference number: 6 (lower is better) Translates to: KHRPPSRKRNST*LCLETHDPLAA Trigger: GGCAGCCAGAGGATCATGTGTCTCCAGACAAAGGCAAGTGCTATTTCTCTTCCTGCTCGGGGGTCTGTGTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055949.4 |
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