Pregenerated sensors for PCDHB17 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000046387Ensembl transcript IDs: ENSMUST00000053856.6
Found 85 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CGCCAGTTTGCAGCCATAACTGAGCAATCACGCTGCCCCCTTCTGTaGCCCAGAATGCACATGACTGTGACTTATGCACACACTCTGTTT | + |
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Preference number: 1 (lower is better) Translates to: RQFAAITEQSRCPLL*PRMHMTVTYAHTLF Trigger: AAACAGAGTGTGTGCATAAGTCACAGTCATGTGCATTCTGGGGCACAGAAGGGGGCAGCGTGATTGCTCAGTTATGGCTGCAAACTGGCG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| 3UTR TCA 90 bp | ACTCTATCACATTCTCTAACAGAAGCGCCAGTTTGCAGCCATAACTaGGCAATCACGCTGCCCCCTTCTGTGCCCCAGAATGCACATGAC | + |
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Preference number: 1 (lower is better) Translates to: TLSHSLTEAPVCSHN*AITLPPSVPQNAHD Trigger: GTCATGTGCATTCTGGGGCACAGAAGGGGGCAGCGTGATTGCTCAGTTATGGCTGCAAACTGGCGCTTCTGTTAGAGAATGTGATAGAGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| 3UTR GCA 90 bp | CTTCTAGCGCAGACTCACTTTAATCTCCCTTGCATTTCTTTAGCCTaGAGCGCCACCATGTGGTTCCAACAGATTAAAAATGGCTGTATC | + |
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Preference number: 1 (lower is better) Translates to: LLAQTHFNLPCISLA*SATMWFQQIKNGCI Trigger: GATACAGCCATTTTTAATCTGTTGGAACCACATGGTGGCGCTGCAGGCTAAAGAAATGCAAGGGAGATTAAAGTGAGTCTGCGCTAGAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| 3UTR TCA 90 bp | GTAAGGAGGACAAGAAACAGCACGTGTCCTTCAGCTCCTACCATCTaGAATTCACGCTTTTTCATTTCACATACTTTGAAGTTTCTGTTG | + |
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Preference number: 1 (lower is better) Translates to: VRRTRNSTCPSAPTI*NSRFFISHTLKFLL Trigger: CAACAGAAACTTCAAAGTATGTGAAATGAAAAAGCGTGAATTTCAGATGGTAGGAGCTGAAGGACACGTGCTGTTTCTTGTCCTCCTTAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| 3UTR TCA 90 bp | AGAATAGCTTCTAGTTTTATCAGAATCTACCTTTCCCTCTATATGTaGCTAATTTGGACAGGAACTGTACCTTATCTCTGGTTGGAAAAT | + |
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Preference number: 1 (lower is better) Translates to: RIASSFIRIYLSLYM*LIWTGTVPYLWLEN Trigger: ATTTTCCAACCAGAGATAAGGTACAGTTCCTGTCCAAATTAGTCACATATAGAGGGAAAGGTAGATTCTGATAAAACTAGAAGCTATTCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| 3UTR-3UTR TCA 90 bp | ACTGAGCAATCACGCTGCCCCCTTCTGTGCCCCAGAATGCACATGACTGTGACTCCTGTGCTACAAATATaGGTAAAACCAAACATGAGG | + |
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Preference number: 2 (lower is better) Translates to: TEQSRCPLLCPRMHMTVTPVLQI*VKPNMR Trigger: CCTCATGTTTGGTTTTACTCATATTTGTAGCACAGG...AGTCACAGTCATGTGCATTCTGGGGCACAGAAGGGGGCAGCGTGATTGCTCAGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| 3UTR-3UTR TCA 90 bp | ACTGAGCAATCACGCTGCCCCCTTCTGTGCCCCAGAATGCACATGACTGTGACTCTTTCCCTCTATATGTaGCTAATTTGGACAGGAACT | + |
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Preference number: 2 (lower is better) Translates to: TEQSRCPLLCPRMHMTVTLSLYM*LIWTGT Trigger: AGTTCCTGTCCAAATTAGTCACATATAGAGGGAAAG...AGTCACAGTCATGTGCATTCTGGGGCACAGAAGGGGGCAGCGTGATTGCTCAGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| 3UTR-3UTR GCA 90 bp | GTGAGCATGCCTTCTGATAACATATTTCATAGTTCTGGAAACAGGCACAGGAACACTGAGCAATCACGCTaGCCCCTTCTGTGCCCCAGA | + |
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Preference number: 2 (lower is better) Translates to: VSMPSDNIFHSSGNRHRNTEQSR*PLLCPR Trigger: TCTGGGGCACAGAAGGGGGCAGCGTGATTGCTCAGT...GTTCCTGTGCCTGTTTCCAGAACTATGAAATATGTTATCAGAAGGCATGCTCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| 3UTR-3UTR TCA 90 bp | GCATGCCTTCTGATAACATATTTCATAGTTCTGGAAACAGGCACAGGAACACAGCATGAGGTCCGAGCCTaGAAAAGGACAGGCAAAGTG | + |
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Preference number: 2 (lower is better) Translates to: ACLLITYFIVLETGTGTQHEVRA*KRTGKV Trigger: CACTTTGCCTGTCCTTTTTCAGGCTCGGACCTCATG...CTGTGTTCCTGTGCCTGTTTCCAGAACTATGAAATATGTTATCAGAAGGCATGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| 3UTR-3UTR GCA 90 bp | CTGGCACCCGCTCATGCAAACAAAGGGGACAATGTGAGCATGCCTTCTGATAACACAATCTATTTACTGTaGCTTGAATACAGACCAGAA | + |
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Preference number: 2 (lower is better) Translates to: LAPAHANKGDNVSMPSDNTIYLL*LEYRPE Trigger: TTCTGGTCTGTATTCAAGGCACAGTAAATAGATTGT...GTTATCAGAAGGCATGCTCACATTGTCCCCTTTGTTTGCATGAGCGGGTGCCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| 3UTR CAA 90 bp | GTAACTTTGTTTCAACGCTGTATTGAACTCCATGCTAATTCTATTTaGTCTCTGGCACCCGCTCATGCAAACAAAGGGGACAATGTGAGC | + |
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Preference number: 2 (lower is better) Translates to: VTLFQRCIELHANSI*SLAPAHANKGDNVS Trigger: GCTCACATTGTCCCCTTTGTTTGCATGAGCGGGTGCCAGAGACAAAATAGAATTAGCATGGAGTTCAATACAGCGTTGAAACAAAGTTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| 3UTR-3UTR TCA 90 bp | AGAAAACTTATTCCAACTCTATCACATTCTCTAACAGAAGCGCCAGTTTGCAGCCTATTTACTGTGCCTTaGATACAGACCAGAACCATG | + |
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Preference number: 2 (lower is better) Translates to: RKLIPTLSHSLTEAPVCSLFTVP*IQTRTM Trigger: CATGGTTCTGGTCTGTATTCAAGGCACAGTAAATAG...GCTGCAAACTGGCGCTTCTGTTAGAGAATGTGATAGAGTTGGAATAAGTTTTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| 3UTR-3UTR CCA 90 bp | GTTCTGGAAACAGGCACAGGAACACAGGGAACGTGCAAACGAAATGTTTCACTAACTGTACCTTATCTCTaGTTGGAAAATCATTCAGTT | + |
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Preference number: 2 (lower is better) Translates to: VLETGTGTQGTCKRNVSLTVPYL*LENHSV Trigger: AACTGAATGATTTTCCAACCAGAGATAAGGTACAGT...TAGTGAAACATTTCGTTTGCACGTTCCCTGTGTTCCTGTGCCTGTTTCCAGAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| 3UTR-3UTR TCA 90 bp | GCATGCCTTCTGATAACATATTTCATAGTTCTGGAAACAGGCACAGGAACACAGAAATCCCATCTCTGTTaGATGGAAAAATCACACCAT | + |
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Preference number: 2 (lower is better) Translates to: ACLLITYFIVLETGTGTQKSHLC*MEKSHH Trigger: ATGGTGTGATTTTTCCATTCAACAGAGATGGGATTT...CTGTGTTCCTGTGCCTGTTTCCAGAACTATGAAATATGTTATCAGAAGGCATGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| 3UTR-3UTR TCA 90 bp | AGAAAACTTATTCCAACTCTATCACATTCTCTAACAGAAGCGCCAGTTTGCAGCTCAGCTCCTACCATCTaGAATTCACGCTTTTTCATT | + |
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Preference number: 2 (lower is better) Translates to: RKLIPTLSHSLTEAPVCSSAPTI*NSRFFI Trigger: AATGAAAAAGCGTGAATTTCAGATGGTAGGAGCTGA...GCTGCAAACTGGCGCTTCTGTTAGAGAATGTGATAGAGTTGGAATAAGTTTTCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| 3UTR-3UTR CCA 90 bp | AGAAAACTTATTCCAACTCTATCACATTCTCTAACAGAAGCGCCAGTTTGCAGCAACAAAAATCAAAGGTaGCTAATCACCAAGTCTGGC | + |
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Preference number: 2 (lower is better) Translates to: RKLIPTLSHSLTEAPVCSNKNQR*LITKSG Trigger: GCCAGACTTGGTGATTAGCCACCTTTGATTTTTGTT...GCTGCAAACTGGCGCTTCTGTTAGAGAATGTGATAGAGTTGGAATAAGTTTTCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| 3UTR-3UTR GCA 90 bp | GCATGCCTTCTGATAACATATTTCATAGTTCTGGAAACAGGCACAGGAACACAGAAAAGTTTCAGCGAATaGATTAACTGCAGAGAAAAC | + |
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Preference number: 2 (lower is better) Translates to: ACLLITYFIVLETGTGTQKSFSE*INCREN Trigger: GTTTTCTCTGCAGTTAATGCATTCGCTGAAACTTTT...CTGTGTTCCTGTGCCTGTTTCCAGAACTATGAAATATGTTATCAGAAGGCATGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| 3UTR-3UTR TCA 90 bp | TTTCTCAGAAAACTTATTCCAACTCTATCACATTCTCTAACAGAAGCGCCAGTTAAGAAAAGATTAGATTaGCCCCCAAATCCCATCTCT | + |
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Preference number: 2 (lower is better) Translates to: FLRKLIPTLSHSLTEAPVKKRLD*PPNPIS Trigger: AGAGATGGGATTTGGGGGTCAATCTAATCTTTTCTT...AACTGGCGCTTCTGTTAGAGAATGTGATAGAGTTGGAATAAGTTTTCTGAGAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| 3UTR CAA 90 bp | CCACCATGTGGTTCCAACAGATTAAAAATGGCTGTATCTAATTTTTaGTGCCCACACATACATCTTTATGAAATATTTCCCATAGCATGT | + |
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Preference number: 2 (lower is better) Translates to: PPCGSNRLKMAVSNF*CPHIHLYEIFPIAC Trigger: ACATGCTATGGGAAATATTTCATAAAGATGTATGTGTGGGCACAAAAAATTAGATACAGCCATTTTTAATCTGTTGGAACCACATGGTGG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| 3UTR-3UTR GCA 90 bp | GCACATGACTGTGACTTATGCACACACTCTGTTTATTATGTAAATAGAATAGCTAGCGAATGCATTAACTaGAGAGAAAACCTTTTGGTT | + |
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Preference number: 2 (lower is better) Translates to: AHDCDLCTHSVYYVNRIASECIN*RENLLV Trigger: AACCAAAAGGTTTTCTCTGCAGTTAATGCATTCGCT...AGCTATTCTATTTACATAATAAACAGAGTGTGTGCATAAGTCACAGTCATGTGC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| 3UTR-3UTR CCA 90 bp | TTTCTCAGAAAACTTATTCCAACTCTATCACATTCTCTAACAGAAGCGCCAGTTCCCATCTCTGTTGAATaGAAAAATCACACCATTTAT | + |
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Preference number: 2 (lower is better) Translates to: FLRKLIPTLSHSLTEAPVPISVE*KNHTIY Trigger: ATAAATGGTGTGATTTTTCCATTCAACAGAGATGGG...AACTGGCGCTTCTGTTAGAGAATGTGATAGAGTTGGAATAAGTTTTCTGAGAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| 3UTR TCA 72 bp | CATTCTCTAACAGAAGCGCCAGTTTGCAGCCATAACTaGGCAATCACGCTGCCCCCTTCTGTGCCCCAGAAT | + |
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Preference number: 3 (lower is better) Translates to: HSLTEAPVCSHN*AITLPPSVPQN Trigger: ATTCTGGGGCACAGAAGGGGGCAGCGTGATTGCTCAGTTATGGCTGCAAACTGGCGCTTCTGTTAGAGAATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| 3UTR-3UTR CAA 90 bp | CTGGCACCCGCTCATGCAAACAAAGGGGACAATGTGAGCATGCCTTCTGATAACGTACCTTATCTCTGGTaGGAAAATCATTCAGTTACT | + |
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Preference number: 3 (lower is better) Translates to: LAPAHANKGDNVSMPSDNVPYLW*ENHSVT Trigger: AGTAACTGAATGATTTTCCAACCAGAGATAAGGTAC...GTTATCAGAAGGCATGCTCACATTGTCCCCTTTGTTTGCATGAGCGGGTGCCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| 3UTR TCA 72 bp | CTCTGGCACCCGCTCATGCAAACAAAGGGGACAATGTaGGCATGCCTTCTGATAACATATTTCATAGTTCTG | + |
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Preference number: 3 (lower is better) Translates to: LWHPLMQTKGTM*ACLLITYFIVL Trigger: CAGAACTATGAAATATGTTATCAGAAGGCATGCTCACATTGTCCCCTTTGTTTGCATGAGCGGGTGCCAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| 3UTR GCA 72 bp | CAGACTCACTTTAATCTCCCTTGCATTTCTTTAGCCTaGAGCGCCACCATGTGGTTCCAACAGATTAAAAAT | + |
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Preference number: 3 (lower is better) Translates to: QTHFNLPCISLA*SATMWFQQIKN Trigger: ATTTTTAATCTGTTGGAACCACATGGTGGCGCTGCAGGCTAAAGAAATGCAAGGGAGATTAAAGTGAGTCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| 3UTR-3UTR CAA 90 bp | GCATGCCTTCTGATAACATATTTCATAGTTCTGGAAACAGGCACAGGAACACAGTCTATTTACTGTGCCTaGAATACAGACCAGAACCAT | + |
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Preference number: 3 (lower is better) Translates to: ACLLITYFIVLETGTGTQSIYCA*NTDQNH Trigger: ATGGTTCTGGTCTGTATTCAAGGCACAGTAAATAGA...CTGTGTTCCTGTGCCTGTTTCCAGAACTATGAAATATGTTATCAGAAGGCATGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| 3UTR-3UTR CAA 90 bp | GCATGCCTTCTGATAACATATTTCATAGTTCTGGAAACAGGCACAGGAACACAGCTATATGTGACTAATTaGGACAGGAACTGTACCTTA | + |
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Preference number: 3 (lower is better) Translates to: ACLLITYFIVLETGTGTQLYVTN*DRNCTL Trigger: TAAGGTACAGTTCCTGTCCAAATTAGTCACATATAG...CTGTGTTCCTGTGCCTGTTTCCAGAACTATGAAATATGTTATCAGAAGGCATGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| 3UTR TCA 72 bp | ACAAGAAACAGCACGTGTCCTTCAGCTCCTACCATCTaGAATTCACGCTTTTTCATTTCACATACTTTGAAG | + |
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Preference number: 3 (lower is better) Translates to: TRNSTCPSAPTI*NSRFFISHTLK Trigger: CTTCAAAGTATGTGAAATGAAAAAGCGTGAATTTCAGATGGTAGGAGCTGAAGGACACGTGCTGTTTCTTGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| 3UTR GCA 72 bp | CCTTCTGTGCCCCAGAATGCACATGACTGTGACTTATaGACACACTCTGTTTATTATGTAAATAGAATAGCT | + |
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Preference number: 3 (lower is better) Translates to: PSVPQNAHDCDL*THSVYYVNRIA Trigger: AGCTATTCTATTTACATAATAAACAGAGTGTGTGCATAAGTCACAGTCATGTGCATTCTGGGGCACAGAAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| 3UTR TCA 72 bp | ATCTATTTACTGTGCCTTGAATACAGACCAGAACCATaGCAAATCAGTACAGATCCTAACATTGCTGAAAGC | + |
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Preference number: 3 (lower is better) Translates to: IYLLCLEYRPEP*QISTDPNIAES Trigger: GCTTTCAGCAATGTTAGGATCTGTACTGATTTGTCATGGTTCTGGTCTGTATTCAAGGCACAGTAAATAGAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR TCA 90 bp | CTGGCACCCGCTCATGCAAACAAAGGGGACAATGTGAGCATGCCTTCTGATAACGGGTCCCCACACCTCTaGCATCCACCAGATGGCCAG | + |
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Preference number: 4 (lower is better) Translates to: LAPAHANKGDNVSMPSDNGSPHL*HPPDGQ Trigger: CTGGCCATCTGGTGGATGTCAGAGGTGTGGGGACCC...GTTATCAGAAGGCATGCTCACATTGTCCCCTTTGTTTGCATGAGCGGGTGCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR TCA 90 bp | ACTGAGCAATCACGCTGCCCCCTTCTGTGCCCCAGAATGCACATGACTGTGACTCGGTATGTTGGCTGCTaGAACTTGGGTGCATTATCG | + |
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Preference number: 4 (lower is better) Translates to: TEQSRCPLLCPRMHMTVTRYVGC*NLGALS Trigger: CGATAATGCACCCAAGTTTCAGCAGCCAACATACCG...AGTCACAGTCATGTGCATTCTGGGGCACAGAAGGGGGCAGCGTGATTGCTCAGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR GCA 90 bp | ACTGAGCAATCACGCTGCCCCCTTCTGTGCCCCAGAATGCACATGACTGTGACTCCTGCCCCTGACACATaGAGCAAAACAAAGAAAGCC | + |
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Preference number: 4 (lower is better) Translates to: TEQSRCPLLCPRMHMTVTPAPDT*SKTKKA Trigger: GGCTTTCTTTGTTTTGCTGCATGTGTCAGGGGCAGG...AGTCACAGTCATGTGCATTCTGGGGCACAGAAGGGGGCAGCGTGATTGCTCAGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR GCA 90 bp | CTGGCACCCGCTCATGCAAACAAAGGGGACAATGTGAGCATGCCTTCTGATAACCTGAGCGCGAACAGCTaGCCATTGTCTGCGTTGATG | + |
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Preference number: 4 (lower is better) Translates to: LAPAHANKGDNVSMPSDNLSANS*PLSALM Trigger: CATCAACGCAGACAATGGGCAGCTGTTCGCGCTCAG...GTTATCAGAAGGCATGCTCACATTGTCCCCTTTGTTTGCATGAGCGGGTGCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR GCA 90 bp | CTGGCACCCGCTCATGCAAACAAAGGGGACAATGTGAGCATGCCTTCTGATAACTGGGCAGCAGTTCTGTaGAAGGCGCAGAGGAGTTCT | + |
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Preference number: 4 (lower is better) Translates to: LAPAHANKGDNVSMPSDNWAAVL*KAQRSS Trigger: AGAACTCCTCTGCGCCTTGCACAGAACTGCTGCCCA...GTTATCAGAAGGCATGCTCACATTGTCCCCTTTGTTTGCATGAGCGGGTGCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR TCA 90 bp | ACTGAGCAATCACGCTGCCCCCTTCTGTGCCCCAGAATGCACATGACTGTGACTAGCAGATCTCCAGATTaGAGGTTGAGCTGCAAATGC | + |
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Preference number: 4 (lower is better) Translates to: TEQSRCPLLCPRMHMTVTSRSPD*RLSCKC Trigger: GCATTTGCAGCTCAACCTTCAATCTGGAGATCTGCT...AGTCACAGTCATGTGCATTCTGGGGCACAGAAGGGGGCAGCGTGATTGCTCAGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR TCA 90 bp | CTGGCACCCGCTCATGCAAACAAAGGGGACAATGTGAGCATGCCTTCTGATAACTGTCCACTACTTCAATaGGAACCTGTGCCGTCCCAG | + |
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Preference number: 4 (lower is better) Translates to: LAPAHANKGDNVSMPSDNCPLLQ*EPVPSQ Trigger: CTGGGACGGCACAGGTTCTCATTGAAGTAGTGGACA...GTTATCAGAAGGCATGCTCACATTGTCCCCTTTGTTTGCATGAGCGGGTGCCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR GCA 90 bp | ACTGAGCAATCACGCTGCCCCCTTCTGTGCCCCAGAATGCACATGACTGTGACTATCTTTCCCAAGATTTaGCACAAAGGAGCCCCTCTC | + |
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Preference number: 4 (lower is better) Translates to: TEQSRCPLLCPRMHMTVTIFPKI*HKGAPL Trigger: GAGAGGGGCTCCTTTGTGGCAAATCTTGGGAAAGAT...AGTCACAGTCATGTGCATTCTGGGGCACAGAAGGGGGCAGCGTGATTGCTCAGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR GCA 90 bp | GCATGCCTTCTGATAACATATTTCATAGTTCTGGAAACAGGCACAGGAACACAGCCGACCTGGCCCTCCTaGACAGCCTCACCCCCACAA | + |
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Preference number: 4 (lower is better) Translates to: ACLLITYFIVLETGTGTQPTWPS*TASPPQ Trigger: TTGTGGGGGTGAGGCTGTGCAGGAGGGCCAGGTCGG...CTGTGTTCCTGTGCCTGTTTCCAGAACTATGAAATATGTTATCAGAAGGCATGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR GCA 90 bp | AGAAAACTTATTCCAACTCTATCACATTCTCTAACAGAAGCGCCAGTTTGCAGCGAGTCCAGGGCCAGCTaGGGGTCGTGGGAAGGCAAC | + |
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Preference number: 4 (lower is better) Translates to: RKLIPTLSHSLTEAPVCSESRAS*GSWEGN Trigger: GTTGCCTTCCCACGACCCGCAGCTGGCCCTGGACTC...GCTGCAAACTGGCGCTTCTGTTAGAGAATGTGATAGAGTTGGAATAAGTTTTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR GCA 90 bp | CTGGCACCCGCTCATGCAAACAAAGGGGACAATGTGAGCATGCCTTCTGATAACGCCTTTGTCTCAGATTaGACATCCATGCAGTCTCCA | + |
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Preference number: 4 (lower is better) Translates to: LAPAHANKGDNVSMPSDNAFVSD*TSMQSP Trigger: TGGAGACTGCATGGATGTGCAATCTGAGACAAAGGC...GTTATCAGAAGGCATGCTCACATTGTCCCCTTTGTTTGCATGAGCGGGTGCCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR CCA 90 bp | CTGGCACCCGCTCATGCAAACAAAGGGGACAATGTGAGCATGCCTTCTGATAACCTGTTTCTTCCTCTATaGAATAGGGGCCCAGTTCTG | + |
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Preference number: 4 (lower is better) Translates to: LAPAHANKGDNVSMPSDNLFLPL*NRGPVL Trigger: CAGAACTGGGCCCCTATTCCATAGAGGAAGAAACAG...GTTATCAGAAGGCATGCTCACATTGTCCCCTTTGTTTGCATGAGCGGGTGCCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR CCA 90 bp | GTTCTGGAAACAGGCACAGGAACACAGGGAACGTGCAAACGAAATGTTTCACTAGAACACACGGCTCAATaGGGCCACATAGCTCCTCTC | + |
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Preference number: 4 (lower is better) Translates to: VLETGTGTQGTCKRNVSLEHTAQ*GHIAPL Trigger: GAGAGGAGCTATGTGGCCCCATTGAGCCGTGTGTTC...TAGTGAAACATTTCGTTTGCACGTTCCCTGTGTTCCTGTGCCTGTTTCCAGAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR CCA 90 bp | AGAAAACTTATTCCAACTCTATCACATTCTCTAACAGAAGCGCCAGTTTGCAGCTCAGAGAGGCCGACCTaGCCCTCCTGCACAGCCTCA | + |
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Preference number: 4 (lower is better) Translates to: RKLIPTLSHSLTEAPVCSSERPT*PSCTAS Trigger: TGAGGCTGTGCAGGAGGGCCAGGTCGGCCTCTCTGA...GCTGCAAACTGGCGCTTCTGTTAGAGAATGTGATAGAGTTGGAATAAGTTTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR GCA 90 bp | CTGGCACCCGCTCATGCAAACAAAGGGGACAATGTGAGCATGCCTTCTGATAACAAGAAAGCCAGGACTTaGCTTTGTCTCAGATTGCAC | + |
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Preference number: 4 (lower is better) Translates to: LAPAHANKGDNVSMPSDNKKART*LCLRLH Trigger: GTGCAATCTGAGACAAAGGCAAGTCCTGGCTTTCTT...GTTATCAGAAGGCATGCTCACATTGTCCCCTTTGTTTGCATGAGCGGGTGCCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR TCA 90 bp | GTGAGCATGCCTTCTGATAACATATTTCATAGTTCTGGAAACAGGCACAGGAACCAGAGTCTGTGGCACTaGTGGTGCCTATGTGCATGG | + |
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Preference number: 4 (lower is better) Translates to: VSMPSDNIFHSSGNRHRNQSLWH*WCLCAW Trigger: CCATGCACATAGGCACCATCAGTGCCACAGACTCTG...GTTCCTGTGCCTGTTTCCAGAACTATGAAATATGTTATCAGAAGGCATGCTCAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR TCA 90 bp | GTGAGCATGCCTTCTGATAACATATTTCATAGTTCTGGAAACAGGCACAGGAACGCAACAGCGAGTAGCTaGTGTGGGAATTGGAGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: VSMPSDNIFHSSGNRHRNATASS*CGNWSQ Trigger: CTGGCTCCAATTCCCACATCAGCTACTCGCTGTTGC...GTTCCTGTGCCTGTTTCCAGAACTATGAAATATGTTATCAGAAGGCATGCTCAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR CCA 90 bp | CTGGCACCCGCTCATGCAAACAAAGGGGACAATGTGAGCATGCCTTCTGATAACTTTTCCATTAACACTTaGAAGTGTAGAACACACGGC | + |
|
Preference number: 4 (lower is better) Translates to: LAPAHANKGDNVSMPSDNFSINT*KCRTHG Trigger: GCCGTGTGTTCTACACTTCCAAGTGTTAATGGAAAA...GTTATCAGAAGGCATGCTCACATTGTCCCCTTTGTTTGCATGAGCGGGTGCCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR TCA 90 bp | GCATGCCTTCTGATAACATATTTCATAGTTCTGGAAACAGGCACAGGAACACAGTGTTTTCTTGGGAAATaGTCCGAGCCCTGCGATTGG | + |
|
Preference number: 4 (lower is better) Translates to: ACLLITYFIVLETGTGTQCFLGK*SEPCDW Trigger: CCAATCGCAGGGCTCGGATCATTTCCCAAGAAAACA...CTGTGTTCCTGTGCCTGTTTCCAGAACTATGAAATATGTTATCAGAAGGCATGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR CCA 90 bp | GTGAGCATGCCTTCTGATAACATATTTCATAGTTCTGGAAACAGGCACAGGAACGTACCAGAGAACCGGTaGGACTGTTCTCGGGAATTT | + |
|
Preference number: 4 (lower is better) Translates to: VSMPSDNIFHSSGNRHRNVPENR*DCSREF Trigger: AAATTCCCGAGAACAGTCCCACCGGTTCTCTGGTAC...GTTCCTGTGCCTGTTTCCAGAACTATGAAATATGTTATCAGAAGGCATGCTCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR CCA 90 bp | TTTCTCAGAAAACTTATTCCAACTCTATCACATTCTCTAACAGAAGCGCCAGTTAGCGCAGGTGAGCCTTaGTCTATTGCACCCACGTGG | + |
|
Preference number: 4 (lower is better) Translates to: FLRKLIPTLSHSLTEAPVSAGEP*SIAPTW Trigger: CCACGTGGGTGCAATAGACCAAGGCTCACCTGCGCT...AACTGGCGCTTCTGTTAGAGAATGTGATAGAGTTGGAATAAGTTTTCTGAGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR TCA 90 bp | GTGAGCATGCCTTCTGATAACATATTTCATAGTTCTGGAAACAGGCACAGGAACCAGGAAATGAGAGTTTaGGCTGAGCCTATAGGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: VSMPSDNIFHSSGNRHRNQEMRV*AEPIGL Trigger: CAGACCTATAGGCTCAGCTCAAACTCTCATTTCCTG...GTTCCTGTGCCTGTTTCCAGAACTATGAAATATGTTATCAGAAGGCATGCTCAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR TCA 90 bp | AGAAAACTTATTCCAACTCTATCACATTCTCTAACAGAAGCGCCAGTTTGCAGCGTCCAAGTCATTGGCTaGGACTGTGAGTACCAGAGA | + |
|
Preference number: 4 (lower is better) Translates to: RKLIPTLSHSLTEAPVCSVQVIG*DCEYQR Trigger: TCTCTGGTACTCACAGTCTCAGCCAATGACTTGGAC...GCTGCAAACTGGCGCTTCTGTTAGAGAATGTGATAGAGTTGGAATAAGTTTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR TCA 90 bp | GCACATGACTGTGACTTATGCACACACTCTGTTTATTATGTAAATAGAATAGCTCAGCGTGCATTTTCCTaGGAGACCTCCCCCATCCGT | + |
|
Preference number: 4 (lower is better) Translates to: AHDCDLCTHSVYYVNRIAQRAFS*ETSPIR Trigger: ACGGATGGGGGAGGTCTCTCAGGAAAATGCACGCTG...AGCTATTCTATTTACATAATAAACAGAGTGTGTGCATAAGTCACAGTCATGTGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR GCA 90 bp | GTGAGCATGCCTTCTGATAACATATTTCATAGTTCTGGAAACAGGCACAGGAACCCTTCAGTAACAGCGTaGATTTTCCTGAGAGACCTC | + |
|
Preference number: 4 (lower is better) Translates to: VSMPSDNIFHSSGNRHRNPSVTA*IFLRDL Trigger: GAGGTCTCTCAGGAAAATGCACGCTGTTACTGAAGG...GTTCCTGTGCCTGTTTCCAGAACTATGAAATATGTTATCAGAAGGCATGCTCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR CCA 90 bp | GTGAGCATGCCTTCTGATAACATATTTCATAGTTCTGGAAACAGGCACAGGAACGTAGCCTTGAGAAGTTaGAATGACAGCCAGGCATTC | + |
|
Preference number: 4 (lower is better) Translates to: VSMPSDNIFHSSGNRHRNVALRS*NDSQAF Trigger: GAATGCCTGGCTGTCATTCCAACTTCTCAAGGCTAC...GTTCCTGTGCCTGTTTCCAGAACTATGAAATATGTTATCAGAAGGCATGCTCAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| 3UTR CAA 72 bp | TTTCAACGCTGTATTGAACTCCATGCTAATTCTATTTaGTCTCTGGCACCCGCTCATGCAAACAAAGGGGAC | + |
|
Preference number: 4 (lower is better) Translates to: FQRCIELHANSI*SLAPAHANKGD Trigger: GTCCCCTTTGTTTGCATGAGCGGGTGCCAGAGACAAAATAGAATTAGCATGGAGTTCAATACAGCGTTGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR TCA 90 bp | GTGAGCATGCCTTCTGATAACATATTTCATAGTTCTGGAAACAGGCACAGGAACGTTACAACCAGGAAATaGGAGTTTGAGCTGAGCCTA | + |
|
Preference number: 4 (lower is better) Translates to: VSMPSDNIFHSSGNRHRNVTTRK*EFELSL Trigger: TAGGCTCAGCTCAAACTCTCATTTCCTGGTTGTAAC...GTTCCTGTGCCTGTTTCCAGAACTATGAAATATGTTATCAGAAGGCATGCTCAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR CCA 90 bp | GCATGCCTTCTGATAACATATTTCATAGTTCTGGAAACAGGCACAGGAACACAGTCTTTACCAGAGCACTaGTCTAGAGAGCTAGGGAAA | + |
|
Preference number: 4 (lower is better) Translates to: ACLLITYFIVLETGTGTQSLPEH*SRELGK Trigger: TTTCCCTAGCTCTCTAGACCAGTGCTCTGGTAAAGA...CTGTGTTCCTGTGCCTGTTTCCAGAACTATGAAATATGTTATCAGAAGGCATGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR TCA 90 bp | AGAAAACTTATTCCAACTCTATCACATTCTCTAACAGAAGCGCCAGTTTGCAGCACCCTCAGTTCAGCCTaGAATACCTCTAAAGGGTTT | + |
|
Preference number: 4 (lower is better) Translates to: RKLIPTLSHSLTEAPVCSTLSSA*NTSKGF Trigger: AAACCCTTTAGAGGTATTTCAGGCTGAACTGAGGGT...GCTGCAAACTGGCGCTTCTGTTAGAGAATGTGATAGAGTTGGAATAAGTTTTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR TCA 90 bp | GCACATGACTGTGACTTATGCACACACTCTGTTTATTATGTAAATAGAATAGCTCTTGAGAAGTTGGAATaGCAGCCAGGCATTCTGGCC | + |
|
Preference number: 4 (lower is better) Translates to: AHDCDLCTHSVYYVNRIALEKLE*QPGILA Trigger: GGCCAGAATGCCTGGCTGTCATTCCAACTTCTCAAG...AGCTATTCTATTTACATAATAAACAGAGTGTGTGCATAAGTCACAGTCATGTGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR CCA 90 bp | AGAAAACTTATTCCAACTCTATCACATTCTCTAACAGAAGCGCCAGTTTGCAGCTGCTCTTTGTTTTCTTaGGAAATGATCCGAGCCCTG | + |
|
Preference number: 4 (lower is better) Translates to: RKLIPTLSHSLTEAPVCSCSLFS*EMIRAL Trigger: CAGGGCTCGGATCATTTCCCAAGAAAACAAAGAGCA...GCTGCAAACTGGCGCTTCTGTTAGAGAATGTGATAGAGTTGGAATAAGTTTTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR CCA 90 bp | GTTCTGGAAACAGGCACAGGAACACAGGGAACGTGCAAACGAAATGTTTCACTATGTCAAGTGCTCTCTTaGTCACTAAAGTGTAAAAGT | + |
|
Preference number: 4 (lower is better) Translates to: VLETGTGTQGTCKRNVSLCQVLS*SLKCKS Trigger: ACTTTTACACTTTAGTGACCAAGAGAGCACTTGACA...TAGTGAAACATTTCGTTTGCACGTTCCCTGTGTTCCTGTGCCTGTTTCCAGAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR TCA 90 bp | GCATGCCTTCTGATAACATATTTCATAGTTCTGGAAACAGGCACAGGAACACAGCCAGTTTCTCATTTATaGGCAGATCTCCAGATTGAA | + |
|
Preference number: 4 (lower is better) Translates to: ACLLITYFIVLETGTGTQPVSHL*ADLQIE Trigger: TTCAATCTGGAGATCTGCTCATAAATGAGAAACTGG...CTGTGTTCCTGTGCCTGTTTCCAGAACTATGAAATATGTTATCAGAAGGCATGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR TCA 90 bp | GTGAGCATGCCTTCTGATAACATATTTCATAGTTCTGGAAACAGGCACAGGAACTTTGCTAATATCTTCTaGAGGCTGAGAAAGTGCATA | + |
|
Preference number: 4 (lower is better) Translates to: VSMPSDNIFHSSGNRHRNFANIF*RLRKCI Trigger: TATGCACTTTCTCAGCCTTCAGAAGATATTAGCAAA...GTTCCTGTGCCTGTTTCCAGAACTATGAAATATGTTATCAGAAGGCATGCTCAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| 3UTR CAA 72 bp | TATCAGAATCTACCTTTCCCTCTATATGTGACTAATTaGGACAGGAACTGTACCTTATCTCTGGTTGGAAAA | + |
|
Preference number: 4 (lower is better) Translates to: YQNLPFPLYVTN*DRNCTLSLVGK Trigger: TTTTCCAACCAGAGATAAGGTACAGTTCCTGTCCAAATTAGTCACATATAGAGGGAAAGGTAGATTCTGATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS GCA 90 bp | CCTCAGGCACGGAATAACCACTCAGAGAGGCCGACCTGGCCCTCCTaGACAGCCTCACCCCCACAAACAGCAGCACAGACAAGAGGAAGA | + |
|
Preference number: 5 (lower is better) Translates to: PQARNNHSERPTWPS*TASPPQTAAQTRGR Trigger: TCTTCCTCTTGTCTGTGCTGCTGTTTGTGGGGGTGAGGCTGTGCAGGAGGGCCAGGTCGGCCTCTCTGAGTGGTTATTCCGTGCCTGAGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR CAA 90 bp | GCATGCCTTCTGATAACATATTTCATAGTTCTGGAAACAGGCACAGGAACACAGTCATCGTGCGCGGGATaGCGCGCCACCTCTGGCAGA | + |
|
Preference number: 5 (lower is better) Translates to: ACLLITYFIVLETGTGTQSSCAG*RATSGR Trigger: TCTGCCAGAGGTGGCGCGCAATCCCGCGCACGATGA...CTGTGTTCCTGTGCCTGTTTCCAGAACTATGAAATATGTTATCAGAAGGCATGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS GCA 90 bp | TTTGTTTTCTTGGGAAATGATCCGAGCCCTGCGATTGGATATCTCTaGCAGGTCCACCCCCAGATCTTTCCCAAGATTTGCCACAAAGGA | + |
|
Preference number: 5 (lower is better) Translates to: FVFLGNDPSPAIGYL*QVHPQIFPKICHKG Trigger: TCCTTTGTGGCAAATCTTGGGAAAGATCTGGGGGTGGACCTGGCAGAGATATCCAATCGCAGGGCTCGGATCATTTCCCAAGAAAACAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS TCA 90 bp | ATACTTTTCCATAATCTCCACTGTCCAAGTCATTGGCTGAGACTGTaGGTACCAGAGAACCGGTGGGACTGTTCTCGGGAATTTGCACTC | + |
|
Preference number: 5 (lower is better) Translates to: ILFHNLHCPSHWLRL*VPENRWDCSREFAL Trigger: GAGTGCAAATTCCCGAGAACAGTCCCACCGGTTCTCTGGTACTCACAGTCTCAGCCAATGACTTGGACAGTGGAGATTATGGAAAAGTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS TCA 90 bp | TGCATACAATACTTTTCCATAATCTCCACTGTCCAAGTCATTGGCTaGGACTGTGAGTACCAGAGAACCGGTGGGACTGTTCTCGGGAAT | + |
|
Preference number: 5 (lower is better) Translates to: CIQYFSIISTVQVIG*DCEYQRTGGTVLGN Trigger: ATTCCCGAGAACAGTCCCACCGGTTCTCTGGTACTCACAGTCTCAGCCAATGACTTGGACAGTGGAGATTATGGAAAAGTATTGTATGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR CAA 90 bp | CTGGCACCCGCTCATGCAAACAAAGGGGACAATGTGAGCATGCCTTCTGATAACACAGTGATGGTGATGTaGTATTTCTCTCTTTCTTCC | + |
|
Preference number: 5 (lower is better) Translates to: LAPAHANKGDNVSMPSDNTVMVM*YFSLSS Trigger: GGAAGAAAGAGAGAAATACAACATCACCATCACTGT...GTTATCAGAAGGCATGCTCACATTGTCCCCTTTGTTTGCATGAGCGGGTGCCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR CAA 90 bp | GTGAGCATGCCTTCTGATAACATATTTCATAGTTCTGGAAACAGGCACAGGAACGATCTTTCCCAAGATTaGCCACAAAGGAGCCCCTCT | + |
|
Preference number: 5 (lower is better) Translates to: VSMPSDNIFHSSGNRHRNDLSQD*PQRSPS Trigger: AGAGGGGCTCCTTTGTGGCAAATCTTGGGAAAGATC...GTTCCTGTGCCTGTTTCCAGAACTATGAAATATGTTATCAGAAGGCATGCTCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR CAA 90 bp | GTTCTGGAAACAGGCACAGGAACACAGGGAACGTGCAAACGAAATGTTTCACTAATGCTCTTTGTTTTCTaGGGAAATGATCCGAGCCCT | + |
|
Preference number: 5 (lower is better) Translates to: VLETGTGTQGTCKRNVSLMLFVF*GNDPSP Trigger: AGGGCTCGGATCATTTCCCAAGAAAACAAAGAGCAT...TAGTGAAACATTTCGTTTGCACGTTCCCTGTGTTCCTGTGCCTGTTTCCAGAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR CAA 90 bp | TTTCTCAGAAAACTTATTCCAACTCTATCACATTCTCTAACAGAAGCGCCAGTTAGCCAGGACTTGCCTTaGTCTCAGATTGCACATCCA | + |
|
Preference number: 5 (lower is better) Translates to: FLRKLIPTLSHSLTEAPVSQDLP*SQIAHP Trigger: TGGATGTGCAATCTGAGACAAAGGCAAGTCCTGGCT...AACTGGCGCTTCTGTTAGAGAATGTGATAGAGTTGGAATAAGTTTTCTGAGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR CAA 90 bp | GCATGCCTTCTGATAACATATTTCATAGTTCTGGAAACAGGCACAGGAACACAGTTGGGTGCATTATCGTaGATGTCCACTACTTCAATG | + |
|
Preference number: 5 (lower is better) Translates to: ACLLITYFIVLETGTGTQLGALS*MSTTSM Trigger: CATTGAAGTAGTGGACATCAACGATAATGCACCCAA...CTGTGTTCCTGTGCCTGTTTCCAGAACTATGAAATATGTTATCAGAAGGCATGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR CAA 90 bp | GCACATGACTGTGACTTATGCACACACTCTGTTTATTATGTAAATAGAATAGCTTGCCTTTGTCTCAGATaGCACATCCATGCAGTCTCC | + |
|
Preference number: 5 (lower is better) Translates to: AHDCDLCTHSVYYVNRIACLCLR*HIHAVS Trigger: GGAGACTGCATGGATGTGCAATCTGAGACAAAGGCA...AGCTATTCTATTTACATAATAAACAGAGTGTGTGCATAAGTCACAGTCATGTGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR CAA 90 bp | GTGAGCATGCCTTCTGATAACATATTTCATAGTTCTGGAAACAGGCACAGGAACAGCTGCAAATGCTCTTaGTTTTCTTGGGAAATGATC | + |
|
Preference number: 5 (lower is better) Translates to: VSMPSDNIFHSSGNRHRNSCKCS*FSWEMI Trigger: GATCATTTCCCAAGAAAACAAAGAGCATTTGCAGCT...GTTCCTGTGCCTGTTTCCAGAACTATGAAATATGTTATCAGAAGGCATGCTCAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS-3UTR CAA 90 bp | GCACATGACTGTGACTTATGCACACACTCTGTTTATTATGTAAATAGAATAGCTGCAATCATTTTTCCATaGTTCGCTGAATCAGGATCT | + |
|
Preference number: 5 (lower is better) Translates to: AHDCDLCTHSVYYVNRIAAIIFP*FAESGS Trigger: AGATCCTGATTCAGCGAACAATGGAAAAATGATTGC...AGCTATTCTATTTACATAATAAACAGAGTGTGTGCATAAGTCACAGTCATGTGC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS TCA 72 bp | CCAGCTGCGGGTCGTGGGAAGGCAACAGCGAGTAGCTaGTGTGGGAATTGGAGCCAGCGTCAGAGTCTGTGG | + |
|
Preference number: 6 (lower is better) Translates to: PAAGRGKATASS*CGNWSQRQSLW Trigger: CCACAGACTCTGACGCTGGCTCCAATTCCCACATCAGCTACTCGCTGTTGCCTTCCCACGACCCGCAGCTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS CAA 72 bp | GAGTACCAGAGAACCGGTGGGACTGTTCTCGGGAATTaGCACTCGGTATGTTGGCTGCTGAAACTTGGGTGC | + |
|
Preference number: 6 (lower is better) Translates to: EYQRTGGTVLGN*HSVCWLLKLGC Trigger: GCACCCAAGTTTCAGCAGCCAACATACCGAGTGCAAATTCCCGAGAACAGTCCCACCGGTTCTCTGGTACTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS CAA 72 bp | TCTTTGTTTTCTTGGGAAATGATCCGAGCCCTGCGATaGGATATCTCTGCCAGGTCCACCCCCAGATCTTTC | + |
|
Preference number: 6 (lower is better) Translates to: SLFSWEMIRALR*DISARSTPRSF Trigger: GAAAGATCTGGGGGTGGACCTGGCAGAGATATCCAATCGCAGGGCTCGGATCATTTCCCAAGAAAACAAAGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS CAA 90 bp | TGCAAATGCTCTTTGTTTTCTTGGGAAATGATCCGAGCCCTGCGATaGGATATCTCTGCCAGGTCCACCCCCAGATCTTTCCCAAGATTT | + |
|
Preference number: 6 (lower is better) Translates to: CKCSLFSWEMIRALR*DISARSTPRSFPRF Trigger: AAATCTTGGGAAAGATCTGGGGGTGGACCTGGCAGAGATATCCAATCGCAGGGCTCGGATCATTTCCCAAGAAAACAAAGAGCATTTGCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS TCA 72 bp | TACTTTTCCATAATCTCCACTGTCCAAGTCATTGGCTaGGACTGTGAGTACCAGAGAACCGGTGGGACTGTT | + |
|
Preference number: 6 (lower is better) Translates to: YFSIISTVQVIG*DCEYQRTGGTV Trigger: AACAGTCCCACCGGTTCTCTGGTACTCACAGTCTCAGCCAATGACTTGGACAGTGGAGATTATGGAAAAGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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| CDS CCA 72 bp | AGTGAGGAATTTTCCTCTATTTCTTTACCAGAGCACTaGTCTAGAGAGCTAGGGAAAACTGGCTTTAAGAAG | + |
|
Preference number: 6 (lower is better) Translates to: SEEFSSISLPEH*SRELGKTGFKK Trigger: CTTCTTAAAGCCAGTTTTCCCTAGCTCTCTAGACCAGTGCTCTGGTAAAGAAATAGAGGAAAATTCCTCACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053856.6 |
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