Pregenerated sensors for PCDHB15 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047033Ensembl transcript IDs: ENSMUST00000050034.3
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GAGCGTGGAGGCTCTCCATTATCCTTGACCACCACTAGCAGCTTATaGTTGGGCACATCTCGCTCGCTTAGTAGCCTGGTGGTGCGCACC | + |
|
Preference number: 5 (lower is better) Translates to: ERGGSPLSLTTTSSL*LGTSRSLSSLVVRT Trigger: GGTGCGCACCACCAGGCTACTAAGCGAGCGAGATGTGCCCAAGCATAAGCTGCTAGTGGTGGTCAAGGATAATGGAGAGCCTCCACGCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050034.3 |
||
| CDS TCA 90 bp | CCTCCCCTCCATCATGCACGTGAATATGGAAATAATCATTGGGGCTaGTGGTGTAGTTACTCAGGCTGTTCGTTCCCACATCGGCATCCT | + |
|
Preference number: 5 (lower is better) Translates to: PPLHHAREYGNNHWG*WCSYSGCSFPHRHP Trigger: AGGATGCCGATGTGGGAACGAACAGCCTGAGTAACTACACCATCAGCCCCAATGATTATTTCCATATTCACGTGCATGATGGAGGGGAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050034.3 |
||
| CDS TCA 72 bp | CCAGCTGCGGGTCGTGAGGCAGCCGCAACGAGTAGGTaGTGTGGGCATTGGAGCCTGAGTCTGAGTCTGTGG | + |
|
Preference number: 6 (lower is better) Translates to: PAAGREAAATSR*CGHWSLSLSLW Trigger: CCACAGACTCAGACTCAGGCTCCAATGCCCACATCACCTACTCGTTGCGGCTGCCTCACGACCCGCAGCTGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050034.3 |
||
| CDS GCA 72 bp | CAAAGCAGACACCCGGAGAGGCTGCCCGGGCCCTCCTaGAGAGTCTTACTCCAACGAACAGCAGCACAGATA | + |
|
Preference number: 6 (lower is better) Translates to: QSRHPERLPGPS*RVLLQRTAAQI Trigger: TATCTGTGCTGCTGTTCGTTGGAGTAAGACTCTGCAGGAGGGCCCGGGCAGCCTCTCCGGGTGTCTGCTTTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050034.3 |
||
| CDS CAA 72 bp | CAGGGCCTCATAGTCCAGAGCCCTGAGCGCGAACAGTaGCCCATTGTCTGCATTGATGGAGATGAGCGAGTC | + |
|
Preference number: 6 (lower is better) Translates to: QGLIVQSPEREQ*PIVCIDGDERV Trigger: GACTCGCTCATCTCCATCAATGCAGACAATGGGCAACTGTTCGCGCTCAGGGCTCTGGACTATGAGGCCCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050034.3 |
||
| CDS TCA 72 bp | AAAGTCCCTCTCTCGGTTTCCTCTGCCACAGAATACTaGAGCTGTTCGGCGCTAGCCCAAGACGCTCCAAGA | + |
|
Preference number: 6 (lower is better) Translates to: KVPLSVSSATEY*SCSALAQDAPR Trigger: TCTTGGAGCGTCTTGGGCTAGCGCCGAACAGCTTCAGTATTCTGTGGCAGAGGAAACCGAGAGAGGGACTTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050034.3 |
||
| CDS GCA 72 bp | GGCTCTCCATTATCCTTGACCACCACTAGCAGCTTATaGTTGGGCACATCTCGCTCGCTTAGTAGCCTGGTG | + |
|
Preference number: 6 (lower is better) Translates to: GSPLSLTTTSSL*LGTSRSLSSLV Trigger: CACCAGGCTACTAAGCGAGCGAGATGTGCCCAAGCATAAGCTGCTAGTGGTGGTCAAGGATAATGGAGAGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050034.3 |
||
| CDS CAA 72 bp | GTGACACTGGCAGAGCGTGGAGGCTCTCCATTATCCTaGACCACCACTAGCAGCTTATGCTTGGGCACATCT | + |
|
Preference number: 6 (lower is better) Translates to: VTLAERGGSPLS*TTTSSLCLGTS Trigger: AGATGTGCCCAAGCATAAGCTGCTAGTGGTGGTCAAGGATAATGGAGAGCCTCCACGCTCTGCCAGTGTCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050034.3 |
||
| CDS CCA 72 bp | AGTCTATTTGTCCGTAACTTCCTGTGTCTAAGTCCCTaGCAGACACAGCGACAACCAAGGAGCCAACAGGGG | + |
|
Preference number: 6 (lower is better) Translates to: SLFVRNFLCLSP*QTQRQPRSQQG Trigger: CCCCTGTTGGCTCCTTGGTTGTCGCTGTGTCTGCCAGGGACTTAGACACAGGAAGTTACGGACAAATAGACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050034.3 |
||
| CDS CAA 72 bp | TCTCCATTATCCTTGACCACCACTAGCAGCTTATGCTaGGGCACATCTCGCTCGCTTAGTAGCCTGGTGGTG | + |
|
Preference number: 6 (lower is better) Translates to: SPLSLTTTSSLC*GTSRSLSSLVV Trigger: CACCACCAGGCTACTAAGCGAGCGAGATGTGCCCAAGCATAAGCTGCTAGTGGTGGTCAAGGATAATGGAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050034.3 |
||
| CDS TCA 72 bp | CATCATGCACGTGAATATGGAAATAATCATTGGGGCTaGTGGTGTAGTTACTCAGGCTGTTCGTTCCCACAT | + |
|
Preference number: 6 (lower is better) Translates to: HHAREYGNNHWG*WCSYSGCSFPH Trigger: ATGTGGGAACGAACAGCCTGAGTAACTACACCATCAGCCCCAATGATTATTTCCATATTCACGTGCATGATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050034.3 |
||
| CDS CAA 72 bp | ACCACCATCTCTGGCCTGAATAGTTATCGAATAAGTTaGAATCGCTTCATAGTTGAGTTCGCGTTTAAGATA | + |
|
Preference number: 6 (lower is better) Translates to: TTISGLNSYRIS*NRFIVEFAFKI Trigger: TATCTTAAACGCGAACTCAACTATGAAGCGATTCAAACTTATTCGATAACTATTCAGGCCAGAGATGGTGGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050034.3 |
||
| CDS CAA 72 bp | GCGTTTAAGATAAAGTTCGCCAGATGTAGAATTGATTaGAAACGTTTGGAGAATTCTTTCTGTGGCATAAAA | + |
|
Preference number: 6 (lower is better) Translates to: AFKIKFARCRID*KRLENSFCGIK Trigger: TTTTATGCCACAGAAAGAATTCTCCAAACGTTTCAAATCAATTCTACATCTGGCGAACTTTATCTTAAACGC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050034.3 |
||