Pregenerated sensors for PCDHB13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047307Ensembl transcript IDs: ENSMUST00000056915.3
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | GAAACCTGTGGTGGGCATATGCTTTTACTTCCACCACCCAGAAGACAGAGGCAGCCAGGGCAGCCAGGATaGCCCAAGGAAAGAGGGATG | + |
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Preference number: 2 (lower is better) Translates to: ETCGGHMLLLPPPRRQRQPGQPG*PKERGM Trigger: CATCCCTCTTTCCTTGGGGCATCCTGGCTGCCCTGG...CTGCCTCTGTCTTCTGGGTGGTGGAAGTAAAAGCATATGCCCACCACAGGTTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| 3UTR-3UTR CCA 90 bp | TTCCAAGACAGCCAGGTCAATCTAGTGAGATTCAGACCATCTCAGGCTACACAGGGAGTGAAGAACTCTTaGAGGGTGAACCAGGAAGGG | + |
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Preference number: 2 (lower is better) Translates to: FQDSQVNLVRFRPSQATQGVKNS*RVNQEG Trigger: CCCTTCCTGGTTCACCCTCCAAGAGTTCTTCACTCC...CTGTGTAGCCTGAGATGGTCTGAATCTCACTAGATTGACCTGGCTGTCTTGGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| 3UTR-3UTR GCA 90 bp | ATGCTTTTACTTCCACCACCCAGAAGACAGAGGCAGGGGATCGATATGAGTTCACTCAGTGGTTTAGTTTaGCTAACATGCATGAGACAC | + |
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Preference number: 2 (lower is better) Translates to: MLLLPPPRRQRQGIDMSSLSGLV*LTCMRH Trigger: GTGTCTCATGCATGTTAGGCAAACTAAACCACTGAG...TGAACTCATATCGATCCCCTGCCTCTGTCTTCTGGGTGGTGGAAGTAAAAGCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| 3UTR GCA 72 bp | ATCTCAGGCTACACAGTGAAACCTGTGGTGGGCATATaGTTTTACTTCCACCACCCAGAAGACAGAGGCAGG | + |
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Preference number: 3 (lower is better) Translates to: ISGYTVKPVVGI*FYFHHPEDRGR Trigger: CCTGCCTCTGTCTTCTGGGTGGTGGAAGTAAAAGCATATGCCCACCACAGGTTTCACTGTGTAGCCTGAGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| 3UTR-3UTR CAA 90 bp | GCAAAAGAGAAGGGGGATGGAGTGAAGAACTCTTGGAGGGTGAACCAGGAAGGGACTCAGTGGTTTAGTTaGCCTAACATGCATGAGACA | + |
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Preference number: 3 (lower is better) Translates to: AKEKGDGVKNSWRVNQEGTQWFS*PNMHET Trigger: TGTCTCATGCATGTTAGGCAAACTAAACCACTGAGT...CCCTTCCTGGTTCACCCTCCAAGAGTTCTTCACTCCATCCCCCTTCTCTTTTGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| 3UTR TCA 72 bp | AATCTAGTGAGATTCAGACCATCTCAGGCTACACAGTaGAACCTGTGGTGGGCATATGCTTTTACTTCCACC | + |
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Preference number: 3 (lower is better) Translates to: NLVRFRPSQATQ*NLWWAYAFTST Trigger: GGTGGAAGTAAAAGCATATGCCCACCACAGGTTTCACTGTGTAGCCTGAGATGGTCTGAATCTCACTAGATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| 3UTR GCA 72 bp | GCTATCATAAAAAGTAAGAGCATAAACTTCTGTCAATaGACATCGATAGCGTGCAGATATAGGTTAAAAGAT | + |
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Preference number: 3 (lower is better) Translates to: AIIKSKSINFCQ*TSIACRYRLKD Trigger: ATCTTTTAACCTATATCTGCACGCTATCGATGTGCATTGACAGAAGTTTATGCTCTTACTTTTTATGATAGC 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR GCA 90 bp | GCAAAAGAGAAGGGGGATGGAGTGAAGAACTCTTGGAGGGTGAACCAGGAAGGGCAGGTATCCGGGCTCTaGAGCCCTGGGAAGCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: AKEKGDGVKNSWRVNQEGQVSGL*SPGKQL Trigger: GAGCTGCTTCCCAGGGCTGCAGAGCCCGGATACCTG...CCCTTCCTGGTTCACCCTCCAAGAGTTCTTCACTCCATCCCCCTTCTCTTTTGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR TCA 90 bp | GCAAAAGAGAAGGGGGATGGAGTGAAGAACTCTTGGAGGGTGAACCAGGAAGGGCGCTGCGATTGCGAGTaGGCACGTGGAAGTGAGGGT | + |
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Preference number: 4 (lower is better) Translates to: AKEKGDGVKNSWRVNQEGRCDCE*ARGSEG Trigger: ACCCTCACTTCCACGTGCTCACTCGCAATCGCAGCG...CCCTTCCTGGTTCACCCTCCAAGAGTTCTTCACTCCATCCCCCTTCTCTTTTGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR GCA 90 bp | GAAACCTGTGGTGGGCATATGCTTTTACTTCCACCACCCAGAAGACAGAGGCAGAGCAGCAGCAGCCTGTaGTTGGGCACATCGCGCTCG | + |
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Preference number: 4 (lower is better) Translates to: ETCGGHMLLLPPPRRQRQSSSSL*LGTSRS Trigger: CGAGCGCGATGTGCCCAAGCACAGGCTGCTGCTGCT...CTGCCTCTGTCTTCTGGGTGGTGGAAGTAAAAGCATATGCCCACCACAGGTTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR TCA 90 bp | GCAAAAGAGAAGGGGGATGGAGTGAAGAACTCTTGGAGGGTGAACCAGGAAGGGGCAGCACATGAAGAGTaGCACTGGCAGAGCGTGGAG | + |
|
Preference number: 4 (lower is better) Translates to: AKEKGDGVKNSWRVNQEGAAHEE*HWQSVE Trigger: CTCCACGCTCTGCCAGTGTCACTCTTCATGTGCTGC...CCCTTCCTGGTTCACCCTCCAAGAGTTCTTCACTCCATCCCCCTTCTCTTTTGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR TCA 90 bp | TTCCAAGACAGCCAGGTCAATCTAGTGAGATTCAGACCATCTCAGGCTACACAGGAGTCCCAGCGCCGCTaGCATCCACCAGATGGCCAG | + |
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Preference number: 4 (lower is better) Translates to: FQDSQVNLVRFRPSQATQESQRR*HPPDGQ Trigger: CTGGCCATCTGGTGGATGTCAGCGGCGCTGGGACTC...CTGTGTAGCCTGAGATGGTCTGAATCTCACTAGATTGACCTGGCTGTCTTGGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR GCA 90 bp | GCAAAAGAGAAGGGGGATGGAGTGAAGAACTCTTGGAGGGTGAACCAGGAAGGGGCTCAGGGAACTTCTTaGCATCGCTGCGATTGCGAG | + |
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Preference number: 4 (lower is better) Translates to: AKEKGDGVKNSWRVNQEGAQGTS*HRCDCE Trigger: CTCGCAATCGCAGCGATGGCAAGAAGTTCCCTGAGC...CCCTTCCTGGTTCACCCTCCAAGAGTTCTTCACTCCATCCCCCTTCTCTTTTGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR TCA 90 bp | ATGCTTTTACTTCCACCACCCAGAAGACAGAGGCAGGGGATCGATATGAGTTCAAATTTCTGTGGTCCCTaGCCTGGGCGGAGACCCACC | + |
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Preference number: 4 (lower is better) Translates to: MLLLPPPRRQRQGIDMSSNFCGP*PGRRPT Trigger: GGTGGGTCTCCGCCCAGGTCAGGGACCACAGAAATT...TGAACTCATATCGATCCCCTGCCTCTGTCTTCTGGGTGGTGGAAGTAAAAGCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR TCA 90 bp | ATGCTTTTACTTCCACCACCCAGAAGACAGAGGCAGGGGATCGATATGAGTTCATGGAGACCAGCGAGGTaGGGGTCAGCTGCTTGTCCT | + |
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Preference number: 4 (lower is better) Translates to: MLLLPPPRRQRQGIDMSSWRPAR*GSAACP Trigger: AGGACAAGCAGCTGACCCTCACCTCGCTGGTCTCCA...TGAACTCATATCGATCCCCTGCCTCTGTCTTCTGGGTGGTGGAAGTAAAAGCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR TCA 90 bp | ATGCTTTTACTTCCACCACCCAGAAGACAGAGGCAGGGGATCGATATGAGTTCACCAGCACTTGGCTGCTaGGCGCTGGAGAACCTTGGT | + |
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Preference number: 4 (lower is better) Translates to: MLLLPPPRRQRQGIDMSSPALGC*ALENLG Trigger: ACCAAGGTTCTCCAGCGCTCAGCAGCCAAGTGCTGG...TGAACTCATATCGATCCCCTGCCTCTGTCTTCTGGGTGGTGGAAGTAAAAGCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR GCA 90 bp | GAAACCTGTGGTGGGCATATGCTTTTACTTCCACCACCCAGAAGACAGAGGCAGTGGGAAGCAGCTCTGTaGAGGGTGCAGAGGCATTCT | + |
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Preference number: 4 (lower is better) Translates to: ETCGGHMLLLPPPRRQRQWEAAL*RVQRHS Trigger: AGAATGCCTCTGCACCCTGCACAGAGCTGCTTCCCA...CTGCCTCTGTCTTCTGGGTGGTGGAAGTAAAAGCATATGCCCACCACAGGTTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR CCA 90 bp | GCAAAAGAGAAGGGGGATGGAGTGAAGAACTCTTGGAGGGTGAACCAGGAAGGGCTGACATCCACCAGATaGCCAGGAAAGTGTCCCTCA | + |
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Preference number: 4 (lower is better) Translates to: AKEKGDGVKNSWRVNQEGLTSTR*PGKCPS Trigger: TGAGGGACACTTTCCTGGCCATCTGGTGGATGTCAG...CCCTTCCTGGTTCACCCTCCAAGAGTTCTTCACTCCATCCCCCTTCTCTTTTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR GCA 90 bp | TTCCAAGACAGCCAGGTCAATCTAGTGAGATTCAGACCATCTCAGGCTACACAGCAGCTCTGTGCAGGGTaGAGAGGCATTCTGCATCGG | + |
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Preference number: 4 (lower is better) Translates to: FQDSQVNLVRFRPSQATQQLCAG*RGILHR Trigger: CCGATGCAGAATGCCTCTGCACCCTGCACAGAGCTG...CTGTGTAGCCTGAGATGGTCTGAATCTCACTAGATTGACCTGGCTGTCTTGGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR CCA 90 bp | TTCCAAGACAGCCAGGTCAATCTAGTGAGATTCAGACCATCTCAGGCTACACAGCTTCAGCATCCTCTGTaGAGTCCTGCGCCACCTCTG | + |
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Preference number: 4 (lower is better) Translates to: FQDSQVNLVRFRPSQATQLQHPL*SPAPPL Trigger: CAGAGGTGGCGCAGGACTCCACAGAGGATGCTGAAG...CTGTGTAGCCTGAGATGGTCTGAATCTCACTAGATTGACCTGGCTGTCTTGGAA 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR TCA 90 bp | GCAAAAGAGAAGGGGGATGGAGTGAAGAACTCTTGGAGGGTGAACCAGGAAGGGGACTGTAATAAGCAGTaGGCCAATGGGACTGTTCTC | + |
|
Preference number: 4 (lower is better) Translates to: AKEKGDGVKNSWRVNQEGDCNKQ*ANGTVL Trigger: GAGAACAGTCCCATTGGCTCACTGCTTATTACAGTC...CCCTTCCTGGTTCACCCTCCAAGAGTTCTTCACTCCATCCCCCTTCTCTTTTGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR TCA 90 bp | TTCCAAGACAGCCAGGTCAATCTAGTGAGATTCAGACCATCTCAGGCTACACAGTCCACCAGCAGCACATaGAGAGTGACACTGGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: FQDSQVNLVRFRPSQATQSTSST*RVTLAE Trigger: CTCTGCCAGTGTCACTCTTCATGTGCTGCTGGTGGA...CTGTGTAGCCTGAGATGGTCTGAATCTCACTAGATTGACCTGGCTGTCTTGGAA 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR CCA 90 bp | GCAAAAGAGAAGGGGGATGGAGTGAAGAACTCTTGGAGGGTGAACCAGGAAGGGCTGTCTCCTCCAGCATaGCATACTGAATTGATCCTG | + |
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Preference number: 4 (lower is better) Translates to: AKEKGDGVKNSWRVNQEGLSPPA*HTELIL Trigger: CAGGATCAATTCAGTATGCCATGCTGGAGGAGACAG...CCCTTCCTGGTTCACCCTCCAAGAGTTCTTCACTCCATCCCCCTTCTCTTTTGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR TCA 90 bp | ATGCTTTTACTTCCACCACCCAGAAGACAGAGGCAGGGGATCGATATGAGTTCAGTGAGCACGTGGAAGTaGGGGTTATCACTGACAGTG | + |
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Preference number: 4 (lower is better) Translates to: MLLLPPPRRQRQGIDMSSVSTWK*GLSLTV Trigger: CACTGTCAGTGATAACCCTCACTTCCACGTGCTCAC...TGAACTCATATCGATCCCCTGCCTCTGTCTTCTGGGTGGTGGAAGTAAAAGCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR GCA 90 bp | ATGCTTTTACTTCCACCACCCAGAAGACAGAGGCAGGGGATCGATATGAGTTCACGCACTTCGCCATTGTaGGCCCACACACTAAACAGT | + |
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Preference number: 4 (lower is better) Translates to: MLLLPPPRRQRQGIDMSSRTSPL*AHTLNS Trigger: ACTGTTTAGTGTGTGGGCGCACAATGGCGAAGTGCG...TGAACTCATATCGATCCCCTGCCTCTGTCTTCTGGGTGGTGGAAGTAAAAGCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR CCA 90 bp | GAAACCTGTGGTGGGCATATGCTTTTACTTCCACCACCCAGAAGACAGAGGCAGTGCCACTATGATACCTaGCAAATTTTCAGGGATGGG | + |
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Preference number: 4 (lower is better) Translates to: ETCGGHMLLLPPPRRQRQCHYDT*QIFRDG Trigger: CCCATCCCTGAAAATTTGCCAGGTATCATAGTGGCA...CTGCCTCTGTCTTCTGGGTGGTGGAAGTAAAAGCATATGCCCACCACAGGTTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR CCA 90 bp | TTCCAAGACAGCCAGGTCAATCTAGTGAGATTCAGACCATCTCAGGCTACACAGATATTTGAATTTCTGTaGTCCCTGACCTGGGCGGAG | + |
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Preference number: 4 (lower is better) Translates to: FQDSQVNLVRFRPSQATQIFEFL*SLTWAE Trigger: CTCCGCCCAGGTCAGGGACCACAGAAATTCAAATAT...CTGTGTAGCCTGAGATGGTCTGAATCTCACTAGATTGACCTGGCTGTCTTGGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR CCA 90 bp | TTCCAAGACAGCCAGGTCAATCTAGTGAGATTCAGACCATCTCAGGCTACACAGGGCACAGAAGGAAAGTaGGGATTAATTGCCTTTCGC | + |
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Preference number: 4 (lower is better) Translates to: FQDSQVNLVRFRPSQATQGTEGK*GLIAFR Trigger: GCGAAAGGCAATTAATCCCCACTTTCCTTCTGTGCC...CTGTGTAGCCTGAGATGGTCTGAATCTCACTAGATTGACCTGGCTGTCTTGGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR GCA 90 bp | TTCCAAGACAGCCAGGTCAATCTAGTGAGATTCAGACCATCTCAGGCTACACAGTCACTTGCCTTGTCTTaGACCACATTTTTGCGTGTG | + |
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Preference number: 4 (lower is better) Translates to: FQDSQVNLVRFRPSQATQSLALS*TTFLRV Trigger: CACACGCAAAAATGTGGTGCAAGACAAGGCAAGTGA...CTGTGTAGCCTGAGATGGTCTGAATCTCACTAGATTGACCTGGCTGTCTTGGAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR GCA 90 bp | GAAACCTGTGGTGGGCATATGCTTTTACTTCCACCACCCAGAAGACAGAGGCAGATGGTAAGACTGGAATaGTTCAAAATCCAACGTGCT | + |
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Preference number: 4 (lower is better) Translates to: ETCGGHMLLLPPPRRQRQMVRLE*FKIQRA Trigger: AGCACGTTGGATTTTGAAGCATTCCAGTCTTACCAT...CTGCCTCTGTCTTCTGGGTGGTGGAAGTAAAAGCATATGCCCACCACAGGTTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR CCA 90 bp | ATGCTTTTACTTCCACCACCCAGAAGACAGAGGCAGGGGATCGATATGAGTTCAGAACACATAACCTGCTaGTTATTTCCAGAGTCCGCA | + |
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Preference number: 4 (lower is better) Translates to: MLLLPPPRRQRQGIDMSSEHITC*LFPESA Trigger: TGCGGACTCTGGAAATAACCAGCAGGTTATGTGTTC...TGAACTCATATCGATCCCCTGCCTCTGTCTTCTGGGTGGTGGAAGTAAAAGCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR TCA 90 bp | GAAACCTGTGGTGGGCATATGCTTTTACTTCCACCACCCAGAAGACAGAGGCAGAGGTGGAGCTATTTCTaGTATTTTAAGGAGCATTTC | + |
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Preference number: 4 (lower is better) Translates to: ETCGGHMLLLPPPRRQRQRWSYF*YFKEHF Trigger: GAAATGCTCCTTAAAATATCAGAAATAGCTCCACCT...CTGCCTCTGTCTTCTGGGTGGTGGAAGTAAAAGCATATGCCCACCACAGGTTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR GCA 90 bp | TTCCAAGACAGCCAGGTCAATCTAGTGAGATTCAGACCATCTCAGGCTACACAGATCAAAACCATCACTTaGCTTGTCTTGCACCACATT | + |
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Preference number: 4 (lower is better) Translates to: FQDSQVNLVRFRPSQATQIKTIT*LVLHHI Trigger: AATGTGGTGCAAGACAAGGCAAGTGATGGTTTTGAT...CTGTGTAGCCTGAGATGGTCTGAATCTCACTAGATTGACCTGGCTGTCTTGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR TCA 90 bp | ATGCTTTTACTTCCACCACCCAGAAGACAGAGGCAGGGGATCGATATGAGTTCATCTAAGACTAATATTTaGATTTCTGTGGTCCCTGAC | + |
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Preference number: 4 (lower is better) Translates to: MLLLPPPRRQRQGIDMSSSKTNI*ISVVPD Trigger: GTCAGGGACCACAGAAATTCAAATATTAGTCTTAGA...TGAACTCATATCGATCCCCTGCCTCTGTCTTCTGGGTGGTGGAAGTAAAAGCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR GCA 90 bp | ATGCTTTTACTTCCACCACCCAGAAGACAGAGGCAGGGGATCGATATGAGTTCAAAAGTGGGGATTAATTaGCTTTCGCAATTTGAACTC | + |
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Preference number: 4 (lower is better) Translates to: MLLLPPPRRQRQGIDMSSKVGIN*LSQFEL Trigger: GAGTTCAAATTGCGAAAGGCAATTAATCCCCACTTT...TGAACTCATATCGATCCCCTGCCTCTGTCTTCTGGGTGGTGGAAGTAAAAGCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR CAA 90 bp | GCAAAAGAGAAGGGGGATGGAGTGAAGAACTCTTGGAGGGTGAACCAGGAAGGGGCCGCTCTGAACTTCTaGCACAGCCTCACCCCCACA | + |
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Preference number: 5 (lower is better) Translates to: AKEKGDGVKNSWRVNQEGAALNF*HSLTPT Trigger: TGTGGGGGTGAGGCTGTGCAAGAAGTTCAGAGCGGC...CCCTTCCTGGTTCACCCTCCAAGAGTTCTTCACTCCATCCCCCTTCTCTTTTGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR CAA 90 bp | ATGCTTTTACTTCCACCACCCAGAAGACAGAGGCAGGGGATCGATATGAGTTCACACGCGCACCAGCACTaGGCTGCTGAGCGCTGGAGA | + |
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Preference number: 5 (lower is better) Translates to: MLLLPPPRRQRQGIDMSSHAHQH*AAERWR Trigger: TCTCCAGCGCTCAGCAGCCAAGTGCTGGTGCGCGTG...TGAACTCATATCGATCCCCTGCCTCTGTCTTCTGGGTGGTGGAAGTAAAAGCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR CAA 90 bp | TTCCAAGACAGCCAGGTCAATCTAGTGAGATTCAGACCATCTCAGGCTACACAGGAGCGCTGGAGAACCTaGGTCTGTGGCGTCTACGCG | + |
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Preference number: 5 (lower is better) Translates to: FQDSQVNLVRFRPSQATQERWRT*VCGVYA Trigger: CGCGTAGACGCCACAGACCAAGGTTCTCCAGCGCTC...CTGTGTAGCCTGAGATGGTCTGAATCTCACTAGATTGACCTGGCTGTCTTGGAA 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR CAA 90 bp | GCAAAAGAGAAGGGGGATGGAGTGAAGAACTCTTGGAGGGTGAACCAGGAAGGGTCAGGGATGGGGCTGTaGAGTGAGGATAGGATCACT | + |
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Preference number: 5 (lower is better) Translates to: AKEKGDGVKNSWRVNQEGSGMGL*SEDRIT Trigger: AGTGATCCTATCCTCACTCAACAGCCCCATCCCTGA...CCCTTCCTGGTTCACCCTCCAAGAGTTCTTCACTCCATCCCCCTTCTCTTTTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR CAA 90 bp | GAAACCTGTGGTGGGCATATGCTTTTACTTCCACCACCCAGAAGACAGAGGCAGGCATGGCATACTGAATaGATCCTGAACCCACCTCCC | + |
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Preference number: 5 (lower is better) Translates to: ETCGGHMLLLPPPRRQRQAWHTE*ILNPPP Trigger: GGGAGGTGGGTTCAGGATCAATTCAGTATGCCATGC...CTGCCTCTGTCTTCTGGGTGGTGGAAGTAAAAGCATATGCCCACCACAGGTTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR CAA 90 bp | ATGCTTTTACTTCCACCACCCAGAAGACAGAGGCAGGGGATCGATATGAGTTCAAGCTCAGGGAACTTCTaGCCATCGCTGCGATTGCGA | + |
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Preference number: 5 (lower is better) Translates to: MLLLPPPRRQRQGIDMSSSSGNF*PSLRLR Trigger: TCGCAATCGCAGCGATGGCAAGAAGTTCCCTGAGCT...TGAACTCATATCGATCCCCTGCCTCTGTCTTCTGGGTGGTGGAAGTAAAAGCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR CAA 90 bp | ATGCTTTTACTTCCACCACCCAGAAGACAGAGGCAGGGGATCGATATGAGTTCACCTGAGCGCAAACAGTaGCCCGTTGTCTGCGTTGAT | + |
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Preference number: 5 (lower is better) Translates to: MLLLPPPRRQRQGIDMSSPERKQ*PVVCVD Trigger: ATCAACGCAGACAACGGGCAACTGTTTGCGCTCAGG...TGAACTCATATCGATCCCCTGCCTCTGTCTTCTGGGTGGTGGAAGTAAAAGCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS GCA 90 bp | CTCTGTGTTCCTCTCAGAGGGCACAGAAGGAAAGTGGGGATTAATTaGCTTTCGCAATTTGAACTCACCAGTCCCAGTGTCTCCTCTCAG | + |
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Preference number: 5 (lower is better) Translates to: LCVPLRGHRRKVGIN*LSQFELTSPSVSSQ Trigger: CTGAGAGGAGACACTGGGACTGGTGAGTTCAAATTGCGAAAGGCAATTAATCCCCACTTTCCTTCTGTGCCCTCTGAGAGGAACACAGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR CAA 90 bp | GCAAAAGAGAAGGGGGATGGAGTGAAGAACTCTTGGAGGGTGAACCAGGAAGGGATCACTTGCCTTGTCTaGCACCACATTTTTGCGTGT | + |
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Preference number: 5 (lower is better) Translates to: AKEKGDGVKNSWRVNQEGITCLV*HHIFAC Trigger: ACACGCAAAAATGTGGTGCAAGACAAGGCAAGTGAT...CCCTTCCTGGTTCACCCTCCAAGAGTTCTTCACTCCATCCCCCTTCTCTTTTGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR CAA 90 bp | TTCCAAGACAGCCAGGTCAATCTAGTGAGATTCAGACCATCTCAGGCTACACAGACCTGCACTGTTATGTaGTGCTGGGTTGTGAGCCTG | + |
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Preference number: 5 (lower is better) Translates to: FQDSQVNLVRFRPSQATQTCTVM*CWVVSL Trigger: CAGGCTCACAACCCAGCACAACATAACAGTGCAGGT...CTGTGTAGCCTGAGATGGTCTGAATCTCACTAGATTGACCTGGCTGTCTTGGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR CAA 90 bp | GCAAAAGAGAAGGGGGATGGAGTGAAGAACTCTTGGAGGGTGAACCAGGAAGGGAATCAAAACCATCACTaGCCTTGTCTTGCACCACAT | + |
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Preference number: 5 (lower is better) Translates to: AKEKGDGVKNSWRVNQEGNQNHH*PCLAPH Trigger: ATGTGGTGCAAGACAAGGCAAGTGATGGTTTTGATT...CCCTTCCTGGTTCACCCTCCAAGAGTTCTTCACTCCATCCCCCTTCTCTTTTGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR CAA 90 bp | ATGCTTTTACTTCCACCACCCAGAAGACAGAGGCAGGGGATCGATATGAGTTCAAAGTGCTTAGTCAGGTaGGCCACAAACGTGCCACTT | + |
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Preference number: 5 (lower is better) Translates to: MLLLPPPRRQRQGIDMSSKCLVR*ATNVPL Trigger: AAGTGGCACGTTTGTGGCCAACCTGACTAAGCACTT...TGAACTCATATCGATCCCCTGCCTCTGTCTTCTGGGTGGTGGAAGTAAAAGCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR CAA 90 bp | TTCCAAGACAGCCAGGTCAATCTAGTGAGATTCAGACCATCTCAGGCTACACAGATTGCCTTTCGCAATTaGAACTCACCAGTCCCAGTG | + |
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Preference number: 5 (lower is better) Translates to: FQDSQVNLVRFRPSQATQIAFRN*NSPVPV Trigger: CACTGGGACTGGTGAGTTCAAATTGCGAAAGGCAAT...CTGTGTAGCCTGAGATGGTCTGAATCTCACTAGATTGACCTGGCTGTCTTGGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR CAA 90 bp | ATGCTTTTACTTCCACCACCCAGAAGACAGAGGCAGGGGATCGATATGAGTTCAAAACCATCACTTGCCTaGTCTTGCACCACATTTTTG | + |
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Preference number: 5 (lower is better) Translates to: MLLLPPPRRQRQGIDMSSKPSLA*SCTTFL Trigger: CAAAAATGTGGTGCAAGACAAGGCAAGTGATGGTTT...TGAACTCATATCGATCCCCTGCCTCTGTCTTCTGGGTGGTGGAAGTAAAAGCAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS-3UTR CAA 90 bp | TTCCAAGACAGCCAGGTCAATCTAGTGAGATTCAGACCATCTCAGGCTACACAGAGAAGAAACGGAAGATaGTCATCTATGGAACACATA | + |
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Preference number: 5 (lower is better) Translates to: FQDSQVNLVRFRPSQATQRRNGR*SSMEHI Trigger: TATGTGTTCCATAGATGACAATCTTCCGTTTCTTCT...CTGTGTAGCCTGAGATGGTCTGAATCTCACTAGATTGACCTGGCTGTCTTGGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS TCA 90 bp | ATCTATGGAACACATAACCTGCTGGTTATTTCCAGAGTCCGCATCTaGAACACTGAATACTGCCACTATGATACCTGGCAAATTTTCAGG | + |
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Preference number: 5 (lower is better) Translates to: IYGTHNLLVISRVRI*NTEYCHYDTWQIFR Trigger: CCTGAAAATTTGCCAGGTATCATAGTGGCAGTATTCAGTGTTTCAGATGCGGACTCTGGAAATAACCAGCAGGTTATGTGTTCCATAGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS TCA 72 bp | CCTCAGGCACAGAGTAGCCACCGAGAGAGGCCGCTCTaGACTTCTTGCACAGCCTCACCCCCACAAACAGCA | + |
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Preference number: 6 (lower is better) Translates to: PQAQSSHRERPL*TSCTASPPQTA Trigger: TGCTGTTTGTGGGGGTGAGGCTGTGCAAGAAGTTCAGAGCGGCCTCTCTCGGTGGCTACTCTGTGCCTGAGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS GCA 72 bp | CCTCTCAGAGGGCACAGAAGGAAAGTGGGGATTAATTaGCTTTCGCAATTTGAACTCACCAGTCCCAGTGTC | + |
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Preference number: 6 (lower is better) Translates to: PLRGHRRKVGIN*LSQFELTSPSV Trigger: GACACTGGGACTGGTGAGTTCAAATTGCGAAAGGCAATTAATCCCCACTTTCCTTCTGTGCCCTCTGAGAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS CCA 72 bp | TCCTCTGTGTTCCTCTCAGAGGGCACAGAAGGAAAGTaGGGATTAATTGCCTTTCGCAATTTGAACTCACCA | + |
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Preference number: 6 (lower is better) Translates to: SSVFLSEGTEGK*GLIAFRNLNSP Trigger: TGGTGAGTTCAAATTGCGAAAGGCAATTAATCCCCACTTTCCTTCTGTGCCCTCTGAGAGGAACACAGAGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS CAA 72 bp | ACTATGATACCTGGCAAATTTTCAGGGATGGGGCTGTaGAGTGAGGATAGGATCACTTCTGGAGCGTTATCA | + |
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Preference number: 6 (lower is better) Translates to: TMIPGKFSGMGL*SEDRITSGALS Trigger: TGATAACGCTCCAGAAGTGATCCTATCCTCACTCAACAGCCCCATCCCTGAAAATTTGCCAGGTATCATAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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| CDS TCA 72 bp | ACACATAACCTGCTGGTTATTTCCAGAGTCCGCATCTaGAACACTGAATACTGCCACTATGATACCTGGCAA | + |
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Preference number: 6 (lower is better) Translates to: THNLLVISRVRI*NTEYCHYDTWQ Trigger: TTGCCAGGTATCATAGTGGCAGTATTCAGTGTTTCAGATGCGGACTCTGGAAATAACCAGCAGGTTATGTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056915.3 |
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