Pregenerated sensors for PCDHB12 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000043458Ensembl transcript IDs: ENSMUST00000055495.6
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GACATAGGGCAGCAGAAGCAGATGGACTGCCACAAATTTAAAGTCTATTTGTACAGAGTTAAGGAAAAATaGGGTCACCACTTCAAAACA | + |
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Preference number: 2 (lower is better) Translates to: DIGQQKQMDCHKFKVYLYRVKEK*GHHFKT Trigger: TGTTTTGAAGTGGTGACCTCATTTTTCCTTAACTCT...GTACAAATAGACTTTAAATTTGTGGCAGTCCATCTGCTTCTGCTGCCCTATGTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS-3UTR TCA 90 bp | GACATAGGGCAGCAGAAGCAGATGGACTGCCACAAATTTAAAGTCTATTTGTACCGAGGGCCTGGCTGCTaGGCGCAGGTGAGCCTCCAT | + |
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Preference number: 4 (lower is better) Translates to: DIGQQKQMDCHKFKVYLYRGPGC*AQVSLH Trigger: ATGGAGGCTCACCTGCGCTCAGCAGCCAGGCCCTCG...GTACAAATAGACTTTAAATTTGTGGCAGTCCATCTGCTTCTGCTGCCCTATGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS-3UTR GCA 90 bp | GACATAGGGCAGCAGAAGCAGATGGACTGCCACAAATTTAAAGTCTATTTGTACATCACCCAGGGAGGCTaGCCTGGCCCTCCTGCACAG | + |
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Preference number: 4 (lower is better) Translates to: DIGQQKQMDCHKFKVYLYITQGG*PGPPAQ Trigger: CTGTGCAGGAGGGCCAGGGCAGCCTCCCTGGGTGAT...GTACAAATAGACTTTAAATTTGTGGCAGTCCATCTGCTTCTGCTGCCCTATGTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS-3UTR GCA 90 bp | CTGAGTCTACTTGTTCATGCTCATAATCTGGACATAGGGCAGCAGAAGCAGATGAGCAGCAGCAGCTTGTaGTTTGGAGCATCGCGCTCA | + |
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Preference number: 4 (lower is better) Translates to: LSLLVHAHNLDIGQQKQMSSSSL*FGASRS Trigger: TGAGCGCGATGCTCCAAAGCACAAGCTGCTGCTGCT...CATCTGCTTCTGCTGCCCTATGTCCAGATTATGAGCATGAACAAGTAGACTCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS-3UTR CCA 90 bp | GACATAGGGCAGCAGAAGCAGATGGACTGCCACAAATTTAAAGTCTATTTGTACCAGGCTCTGCTGCCCTaGGCAATAGCTCCGTACAGG | + |
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Preference number: 4 (lower is better) Translates to: DIGQQKQMDCHKFKVYLYQALLP*AIAPYR Trigger: CCTGTACGGAGCTATTGCCCAGGGCAGCAGAGCCTG...GTACAAATAGACTTTAAATTTGTGGCAGTCCATCTGCTTCTGCTGCCCTATGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS-3UTR CCA 90 bp | TCTGTAACAATGACAGCAGTTCCAGTTACAGCAAATATAAGTCCCCCACAAAAGATCCCGCGCCACCTCTaGCAGAGGCAGGTAAGGCTG | + |
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Preference number: 4 (lower is better) Translates to: SVTMTAVPVTANISPPQKIPRHL*QRQVRL Trigger: CAGCCTTACCTGCCTCTGCCAGAGGTGGCGCGGGAT...CTTTTGTGGGGGACTTATATTTGCTGTAACTGGAACTGCTGTCATTGTTACAGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS-3UTR GCA 90 bp | ACCCTGTCTGAAATAACAAAAACGAAACAAGTCATCTGTAACAATGACAGCAGTCTGCCCTGGCCCTCCTaGACAGTCTCACCCCCACAA | + |
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Preference number: 4 (lower is better) Translates to: TLSEITKTKQVICNNDSSLPWPS*TVSPPQ Trigger: TTGTGGGGGTGAGACTGTGCAGGAGGGCCAGGGCAG...ACTGCTGTCATTGTTACAGATGACTTGTTTCGTTTTTGTTATTTCAGACAGGGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS-3UTR CCA 90 bp | CTGAGTCTACTTGTTCATGCTCATAATCTGGACATAGGGCAGCAGAAGCAGATGAACACAGTCCCTGGCTaGGCGTTCTCAGGAATTGTT | + |
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Preference number: 4 (lower is better) Translates to: LSLLVHAHNLDIGQQKQMNTVPG*AFSGIV Trigger: AACAATTCCTGAGAACGCCCAGCCAGGGACTGTGTT...CATCTGCTTCTGCTGCCCTATGTCCAGATTATGAGCATGAACAAGTAGACTCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS-3UTR CCA 90 bp | TCTGAAATAACAAAAACGAAACAAGTCATCTGTAACAATGACAGCAGTTCCAGTACACGCACGAGGGCCTaGCTGCTGAGCGCAGGTGAG | + |
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Preference number: 4 (lower is better) Translates to: SEITKTKQVICNNDSSSSTRTRA*LLSAGE Trigger: CTCACCTGCGCTCAGCAGCCAGGCCCTCGTGCGTGT...ACTGGAACTGCTGTCATTGTTACAGATGACTTGTTTCGTTTTTGTTATTTCAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS-3UTR CCA 90 bp | AAGCAGATGGACTGCCACAAATTTAAAGTCTATTTGTACATAGTCATTTCAGGTCCAGGGAGGCTGCCCTaGCCCTCCTGCACAGTCTCA | + |
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Preference number: 4 (lower is better) Translates to: KQMDCHKFKVYLYIVISGPGRLP*PSCTVS Trigger: TGAGACTGTGCAGGAGGGCCAGGGCAGCCTCCCTGG...ACCTGAAATGACTATGTACAAATAGACTTTAAATTTGTGGCAGTCCATCTGCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS-3UTR TCA 90 bp | AAGTCATCTGTAACAATGACAGCAGTTCCAGTTACAGCAAATATAAGTCCCCCACAGCCACCACTTTGGTaGTCAGGTATCCAGGCTCTG | + |
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Preference number: 4 (lower is better) Translates to: KSSVTMTAVPVTANISPPQPPLW*SGIQAL Trigger: CAGAGCCTGGATACCTGATCACCAAAGTGGTGGCTG...TGGGGGACTTATATTTGCTGTAACTGGAACTGCTGTCATTGTTACAGATGACTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS-3UTR TCA 90 bp | TCTGTAACAATGACAGCAGTTCCAGTTACAGCAAATATAAGTCCCCCACAAAAGCTTGAGCAGTTGGAATaGCAGCCAGGCATTCTGGCC | + |
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Preference number: 4 (lower is better) Translates to: SVTMTAVPVTANISPPQKLEQLE*QPGILA Trigger: GGCCAGAATGCCTGGCTGTCATTCCAACTGCTCAAG...CTTTTGTGGGGGACTTATATTTGCTGTAACTGGAACTGCTGTCATTGTTACAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS-3UTR CCA 90 bp | ACACAAAGCAGTAGAACCAAATTTTCTAGAGTGGGATCACATCTGAATAGTCTGCAATGTGAACTTCGGTaGTTCCTGACCTGGGTGGGG | + |
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Preference number: 4 (lower is better) Translates to: TQSSRTKFSRVGSHLNSLQCELR*FLTWVG Trigger: CCCCACCCAGGTCAGGAACCACCGAAGTTCACATTG...CAGACTATTCAGATGTGATCCCACTCTAGAAAATTTGGTTCTACTGCTTTGTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS-3UTR TCA 90 bp | AAGTCATCTGTAACAATGACAGCAGTTCCAGTTACAGCAAATATAAGTCCCCCACCTATGTCAGAGTCATaGGCTGCCTTCAGAGGAAAC | + |
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Preference number: 4 (lower is better) Translates to: KSSVTMTAVPVTANISPPPMSES*AAFRGN Trigger: GTTTCCTCTGAAGGCAGCTCATGACTCTGACATAGG...TGGGGGACTTATATTTGCTGTAACTGGAACTGCTGTCATTGTTACAGATGACTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS-3UTR GCA 90 bp | GACATAGGGCAGCAGAAGCAGATGGACTGCCACAAATTTAAAGTCTATTTGTACGTCAGAGTCATGAGCTaGCTTCAGAGGAAACACAGT | + |
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Preference number: 4 (lower is better) Translates to: DIGQQKQMDCHKFKVYLYVRVMS*LQRKHS Trigger: ACTGTGTTTCCTCTGAAGGCAGCTCATGACTCTGAC...GTACAAATAGACTTTAAATTTGTGGCAGTCCATCTGCTTCTGCTGCCCTATGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS-3UTR CCA 90 bp | ACCCTGTCTGAAATAACAAAAACGAAACAAGTCATCTGTAACAATGACAGCAGTAGGAAACACAGTCCCTaGCTGGGCGTTCTCAGGAAT | + |
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Preference number: 4 (lower is better) Translates to: TLSEITKTKQVICNNDSSRKHSP*LGVLRN Trigger: ATTCCTGAGAACGCCCAGCCAGGGACTGTGTTTCCT...ACTGCTGTCATTGTTACAGATGACTTGTTTCGTTTTTGTTATTTCAGACAGGGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS-3UTR TCA 90 bp | CATATATCTCAAGAGTTGACTCATGGCACTATACAATTGTACATCAGAAAGAGACCAGTTCTTCAACCCTaGGCCCCAGATCTTTTGCCA | + |
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Preference number: 4 (lower is better) Translates to: HISQELTHGTIQLYIRKRPVLQP*APDLLP Trigger: TGGCAAAAGATCTGGGGCTCAGGGTTGAAGAACTGG...TCTCTTTCTGATGTACAATTGTATAGTGCCATGAGTCAACTCTTGAGATATATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS-3UTR GCA 90 bp | TCTGTAACAATGACAGCAGTTCCAGTTACAGCAAATATAAGTCCCCCACAAAAGCCCTCCATCGGTGGCTaGAATTTCTATGGTATAATG | + |
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Preference number: 4 (lower is better) Translates to: SVTMTAVPVTANISPPQKPSIGG*NFYGIM Trigger: CATTATACCATAGAAATTGCAGCCACCGATGGAGGG...CTTTTGTGGGGGACTTATATTTGCTGTAACTGGAACTGCTGTCATTGTTACAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS-3UTR TCA 90 bp | TCTGAAATAACAAAAACGAAACAAGTCATCTGTAACAATGACAGCAGTTCCAGTTCCACGACTTCAATGTaGACTTCGGTGGTTCCTGAC | + |
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Preference number: 4 (lower is better) Translates to: SEITKTKQVICNNDSSSSSTTSM*TSVVPD Trigger: GTCAGGAACCACCGAAGTTCACATTGAAGTCGTGGA...ACTGGAACTGCTGTCATTGTTACAGATGACTTGTTTCGTTTTTGTTATTTCAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS-3UTR GCA 90 bp | GACATAGGGCAGCAGAAGCAGATGGACTGCCACAAATTTAAAGTCTATTTGTACAGAATTCAACGCTATTaGGCACAACAGCATTTTCTC | + |
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Preference number: 4 (lower is better) Translates to: DIGQQKQMDCHKFKVYLYRIQRY*AQQHFL Trigger: GAGAAAATGCTGTTGTGCGCAATAGCGTTGAATTCT...GTACAAATAGACTTTAAATTTGTGGCAGTCCATCTGCTTCTGCTGCCCTATGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS-3UTR CCA 90 bp | ACCCTGTCTGAAATAACAAAAACGAAACAAGTCATCTGTAACAATGACAGCAGTGTAACCACATGGAAATaGATGTTGGGATTGACTGTG | + |
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Preference number: 4 (lower is better) Translates to: TLSEITKTKQVICNNDSSVTTWK*MLGLTV Trigger: CACAGTCAATCCCAACATCCATTTCCATGTGGTTAC...ACTGCTGTCATTGTTACAGATGACTTGTTTCGTTTTTGTTATTTCAGACAGGGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS-3UTR CCA 90 bp | ACACAAAGCAGTAGAACCAAATTTTCTAGAGTGGGATCACATCTGAATAGTCTGACTCTCCTTTTCTTCTaGCATGGAATATCTAATTGC | + |
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Preference number: 4 (lower is better) Translates to: TQSSRTKFSRVGSHLNSLTLLFF*HGISNC Trigger: GCAATTAGATATTCCATGCCAGAAGAAAAGGAGAGT...CAGACTATTCAGATGTGATCCCACTCTAGAAAATTTGGTTCTACTGCTTTGTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS-3UTR CCA 90 bp | CATATATCTCAAGAGTTGACTCATGGCACTATACAATTGTACATCAGAAAGAGATGGCTGCAATTTCTATaGTATAATGGTGACTTACCT | + |
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Preference number: 4 (lower is better) Translates to: HISQELTHGTIQLYIRKRWLQFL*YNGDLP Trigger: AGGTAAGTCACCATTATACCATAGAAATTGCAGCCA...TCTCTTTCTGATGTACAATTGTATAGTGCCATGAGTCAACTCTTGAGATATATG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS CCA 90 bp | GGTGAATTGTCATTGTCATCTAGCACTACCACACGCACGAGGGCCTaGCTGCTGAGCGCAGGTGAGCCTCCATCTGTGGCGTCCACGTGC | + |
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Preference number: 5 (lower is better) Translates to: GELSLSSSTTTRTRA*LLSAGEPPSVASTC Trigger: GCACGTGGACGCCACAGATGGAGGCTCACCTGCGCTCAGCAGCCAGGCCCTCGTGCGTGTGGTAGTGCTAGATGACAATGACAATTCACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS GCA 90 bp | CCTCAGGTACAGAGTAATCACCCAGGGAGGCTGCCCTGGCCCTCCTaGACAGTCTCACCCCCACAAACAACAGCACAGACAAGAGGAAGA | + |
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Preference number: 5 (lower is better) Translates to: PQVQSNHPGRLPWPS*TVSPPQTTAQTRGR Trigger: TCTTCCTCTTGTCTGTGCTGTTGTTTGTGGGGGTGAGACTGTGCAGGAGGGCCAGGGCAGCCTCCCTGGGTGATTACTCTGTACCTGAGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS-3UTR CAA 90 bp | AAGTCATCTGTAACAATGACAGCAGTTCCAGTTACAGCAAATATAAGTCCCCCAACCAGCAGCAGCAGCTaGTGCTTTGGAGCATCGCGC | + |
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Preference number: 5 (lower is better) Translates to: KSSVTMTAVPVTANISPPTSSSS*CFGASR Trigger: GCGCGATGCTCCAAAGCACAAGCTGCTGCTGCTGGT...TGGGGGACTTATATTTGCTGTAACTGGAACTGCTGTCATTGTTACAGATGACTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS CCA 90 bp | TCAGGAATTGTTAGAAGCATTTCCGTGTCAGAGAACTCCGGAGAGTaGTCGTTTATATCAGTGAGCTGCAGTTCAGTTTGGAAGAACTGC | + |
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Preference number: 5 (lower is better) Translates to: SGIVRSISVSENSGE*SFISVSCSSVWKNC Trigger: GCAGTTCTTCCAAACTGAACTGCAGCTCACTGATATAAACGACCACTCTCCGGAGTTCTCTGACACGGAAATGCTTCTAACAATTCCTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS-3UTR CAA 90 bp | ATAACAAAAACGAAACAAGTCATCTGTAACAATGACAGCAGTTCCAGTTACAGCCAGGGTATAGGATGTTaGGGTGAAGGCAGGGGCGTT | + |
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Preference number: 5 (lower is better) Translates to: ITKTKQVICNNDSSSSYSQGIGC*GEGRGV Trigger: AACGCCCCTGCCTTCACCCAAACATCCTATACCCTG...GCTGTAACTGGAACTGCTGTCATTGTTACAGATGACTTGTTTCGTTTTTGTTAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS-3UTR CAA 90 bp | TCTGTAACAATGACAGCAGTTCCAGTTACAGCAAATATAAGTCCCCCACAAAAGGGGCGTTCTCAGGAATaGTTAGAAGCATTTCCGTGT | + |
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Preference number: 5 (lower is better) Translates to: SVTMTAVPVTANISPPQKGRSQE*LEAFPC Trigger: ACACGGAAATGCTTCTAACAATTCCTGAGAACGCCC...CTTTTGTGGGGGACTTATATTTGCTGTAACTGGAACTGCTGTCATTGTTACAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS-3UTR CAA 90 bp | AAGTCATCTGTAACAATGACAGCAGTTCCAGTTACAGCAAATATAAGTCCCCCAATGACAACTAAGGCATaGAGGGGACTGTTCTCAGGA | + |
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Preference number: 5 (lower is better) Translates to: KSSVTMTAVPVTANISPPMTTKA*RGLFSG Trigger: TCCTGAGAACAGTCCCCTCAATGCCTTAGTTGTCAT...TGGGGGACTTATATTTGCTGTAACTGGAACTGCTGTCATTGTTACAGATGACTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS-3UTR CAA 90 bp | CTGAGTCTACTTGTTCATGCTCATAATCTGGACATAGGGCAGCAGAAGCAGATGAAAGGTGAATTGTCATaGTCATCTAGCACTACCACA | + |
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Preference number: 5 (lower is better) Translates to: LSLLVHAHNLDIGQQKQMKGELS*SSSTTT Trigger: TGTGGTAGTGCTAGATGACAATGACAATTCACCTTT...CATCTGCTTCTGCTGCCCTATGTCCAGATTATGAGCATGAACAAGTAGACTCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS-3UTR CAA 90 bp | TCTGAAATAACAAAAACGAAACAAGTCATCTGTAACAATGACAGCAGTTCCAGTCCTGGCTCTGTAGCCTaGAGCAGTTGGAATGACAGC | + |
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Preference number: 5 (lower is better) Translates to: SEITKTKQVICNNDSSSSPGSVA*SSWNDS Trigger: GCTGTCATTCCAACTGCTCAAGGCTACAGAGCCAGG...ACTGGAACTGCTGTCATTGTTACAGATGACTTGTTTCGTTTTTGTTATTTCAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS-3UTR CAA 90 bp | AAGTCATCTGTAACAATGACAGCAGTTCCAGTTACAGCAAATATAAGTCCCCCAAGCACGAAAGGTGAATaGTCATTGTCATCTAGCACT | + |
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Preference number: 5 (lower is better) Translates to: KSSVTMTAVPVTANISPPSTKGE*SLSSST Trigger: AGTGCTAGATGACAATGACAATTCACCTTTCGTGCT...TGGGGGACTTATATTTGCTGTAACTGGAACTGCTGTCATTGTTACAGATGACTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS TCA 90 bp | GACTTACCTCGAAATCTAGCTCTTTGGTCAGACGGATTTCTCCTGTaGTTTTGTCTATTACAAATGGTTGAGATAATCCATCCCCTTGAA | + |
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Preference number: 5 (lower is better) Translates to: DLPRNLALWSDGFLL*FCLLQMVEIIHPLE Trigger: TTCAAGGGGATGGATTATCTCAACCATTTGTAATAGACAAAATCACAGGAGAAATCCGTCTGACCAAAGAGCTAGATTTCGAGGTAAGTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS TCA 72 bp | TACCACACGCACGAGGGCCTGGCTGCTGAGCGCAGGTaGGCCTCCATCTGTGGCGTCCACGTGCAGTTCGAA | + |
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Preference number: 6 (lower is better) Translates to: YHTHEGLAAERR*ASICGVHVQFE Trigger: TTCGAACTGCACGTGGACGCCACAGATGGAGGCTCACCTGCGCTCAGCAGCCAGGCCCTCGTGCGTGTGGTA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS TCA 72 bp | CATCTAGCACTACCACACGCACGAGGGCCTGGCTGCTaGGCGCAGGTGAGCCTCCATCTGTGGCGTCCACGT | + |
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Preference number: 6 (lower is better) Translates to: HLALPHARGPGC*AQVSLHLWRPR Trigger: ACGTGGACGCCACAGATGGAGGCTCACCTGCGCTCAGCAGCCAGGCCCTCGTGCGTGTGGTAGTGCTAGATG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS CCA 72 bp | TCATTGTCATCTAGCACTACCACACGCACGAGGGCCTaGCTGCTGAGCGCAGGTGAGCCTCCATCTGTGGCG | + |
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Preference number: 6 (lower is better) Translates to: SLSSSTTTRTRA*LLSAGEPPSVA Trigger: CGCCACAGATGGAGGCTCACCTGCGCTCAGCAGCCAGGCCCTCGTGCGTGTGGTAGTGCTAGATGACAATGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS CAA 72 bp | GAGGAAACACAGTCCCTGGCTGGGCGTTCTCAGGAATaGTTAGAAGCATTTCCGTGTCAGAGAACTCCGGAG | + |
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Preference number: 6 (lower is better) Translates to: EETQSLAGRSQE*LEAFPCQRTPE Trigger: CTCCGGAGTTCTCTGACACGGAAATGCTTCTAACAATTCCTGAGAACGCCCAGCCAGGGACTGTGTTTCCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS CAA 72 bp | CATCTGCAAGAGCTCTTTGTTTCCTCTGTAATGGATTaGAGCTCCTCTAGTGGCCAGTTCTTCAACCCTGAG | + |
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Preference number: 6 (lower is better) Translates to: HLQELFVSSVMD*SSSSGQFFNPE Trigger: CTCAGGGTTGAAGAACTGGCCACTAGAGGAGCTCAAATCCATTACAGAGGAAACAAAGAGCTCTTGCAGATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS GCA 72 bp | ATAATCCATCCCCTTGAAACAGAGAATAGGCGACATTaGCATATATCCCAGCATCTAAGTCCGTGGCAGAGA | + |
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Preference number: 6 (lower is better) Translates to: IIHPLETENRRH*HISQHLSPWQR Trigger: TCTCTGCCACGGACTTAGATGCTGGGATATATGGCAATGTCGCCTATTCTCTGTTTCAAGGGGATGGATTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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| CDS TCA 72 bp | CGAAATCTAGCTCTTTGGTCAGACGGATTTCTCCTGTaGTTTTGTCTATTACAAATGGTTGAGATAATCCAT | + |
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Preference number: 6 (lower is better) Translates to: RNLALWSDGFLL*FCLLQMVEIIH Trigger: ATGGATTATCTCAACCATTTGTAATAGACAAAATCACAGGAGAAATCCGTCTGACCAAAGAGCTAGATTTCG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055495.6 |
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