Pregenerated sensors for PCDHB11 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000051486Ensembl transcript IDs: ENSMUST00000053073.6
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGAGACAAGGCCACAGTGAGTATCATGCTTAGAATGTACAGTTCCTaGGTATGTTATCCAGTGCCATGCAACCATGCAGTTATTTTTCCT | + |
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Preference number: 1 (lower is better) Translates to: RDKATVSIMLRMYSS*VCYPVPCNHAVIFP Trigger: AGGAAAAATAACTGCATGGTTGCATGGCACTGGATAACATACCCAGGAACTGTACATTCTAAGCATGATACTCACTGTGGCCTTGTCTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| 3UTR GCA 90 bp | AATTTGACTATGTTGGATTGCTTGTATCTTTTTGTTACTTGGAAATaGCTGGCAGACATGCATGATCTACCACTGATTATACTCTTAGAG | + |
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Preference number: 1 (lower is better) Translates to: NLTMLDCLYLFVTWK*LADMHDLPLIILLE Trigger: CTCTAAGAGTATAATCAGTGGTAGATCATGCATGTCTGCCAGGCATTTCCAAGTAACAAAAAGATACAAGCAATCCAACATAGTCAAATT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| 3UTR CAA 90 bp | TCAGTTCAAAATTACATCATGGTAGGTAAGGTGCAGTACAGGAGCTaGAAGCAACTGGTAACACTGCATCTCAAGCAAGAAGAAGAAAGC | + |
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Preference number: 2 (lower is better) Translates to: SVQNYIMVGKVQYRS*KQLVTLHLKQEEES Trigger: GCTTTCTTCTTCTTGCTTGAGATGCAGTGTTACCAGTTGCTTCAAGCTCCTGTACTGCACCTTACCTACCATGATGTAATTTTGAACTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| 3UTR-3UTR GCA 90 bp | TTTTGGCTCTCAGTTCAAAATTACATCATGGTAGGTAAGGTGCAGTACAGGAGCTTTGTTACTTGGAAATaGCTGGCAGACATGCATGAT | + |
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Preference number: 2 (lower is better) Translates to: FWLSVQNYIMVGKVQYRSFVTWK*LADMHD Trigger: ATCATGCATGTCTGCCAGGCATTTCCAAGTAACAAA...GCTCCTGTACTGCACCTTACCTACCATGATGTAATTTTGAACTGAGAGCCAAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| 3UTR-3UTR TCA 90 bp | GAATTTGACTATGTTGGATTGCTTGTATCTTTTTGTTACTTGGAAATGCCTGGCGATTTCAGCTGGGAGTaGAGCTCACTAATAGAATGT | + |
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Preference number: 2 (lower is better) Translates to: EFDYVGLLVSFCYLEMPGDFSWE*SSLIEC Trigger: ACATTCTATTAGTGAGCTTCACTCCCAGCTGAAATC...GCCAGGCATTTCCAAGTAACAAAAAGATACAAGCAATCCAACATAGTCAAATTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| 3UTR-3UTR CCA 90 bp | ATGTTATCCAGTGCCATGCAACCATGCAGTTATTTTTCCTATTTCAAGGATAAATATCTTTTTGTTACTTaGAAATGCCTGGCAGACATG | + |
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Preference number: 2 (lower is better) Translates to: MLSSAMQPCSYFSYFKDKYLFVT*KCLADM Trigger: CATGTCTGCCAGGCATTTCCAAGTAACAAAAAGATA...TTTATCCTTGAAATAGGAAAAATAACTGCATGGTTGCATGGCACTGGATAACAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| 3UTR-3UTR CCA 90 bp | ATGTTATCCAGTGCCATGCAACCATGCAGTTATTTTTCCTATTTCAAGGATAAATGGAAAGGTCTGTTTTaGCTCTCAGTTCAAAATTAC | + |
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Preference number: 2 (lower is better) Translates to: MLSSAMQPCSYFSYFKDKWKGLF*LSVQNY Trigger: GTAATTTTGAACTGAGAGCCAAAACAGACCTTTCCA...TTTATCCTTGAAATAGGAAAAATAACTGCATGGTTGCATGGCACTGGATAACAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| 3UTR CCA 72 bp | GCCACAGTGAGTATCATGCTTAGAATGTACAGTTCCTaGGTATGTTATCCAGTGCCATGCAACCATGCAGTT | + |
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Preference number: 3 (lower is better) Translates to: ATVSIMLRMYSS*VCYPVPCNHAV Trigger: AACTGCATGGTTGCATGGCACTGGATAACATACCCAGGAACTGTACATTCTAAGCATGATACTCACTGTGGC 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| 3UTR-3UTR CAA 90 bp | ATGTTATCCAGTGCCATGCAACCATGCAGTTATTTTTCCTATTTCAAGGATAAAGTGCAGTACAGGAGCTaGAAGCAACTGGTAACACTG | + |
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Preference number: 3 (lower is better) Translates to: MLSSAMQPCSYFSYFKDKVQYRS*KQLVTL Trigger: CAGTGTTACCAGTTGCTTCAAGCTCCTGTACTGCAC...TTTATCCTTGAAATAGGAAAAATAACTGCATGGTTGCATGGCACTGGATAACAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| 3UTR-3UTR CAA 90 bp | TTTTGGCTCTCAGTTCAAAATTACATCATGGTAGGTAAGGTGCAGTACAGGAGCATTGCTTGTATCTTTTaGTTACTTGGAAATGCCTGG | + |
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Preference number: 3 (lower is better) Translates to: FWLSVQNYIMVGKVQYRSIACIF*LLGNAW Trigger: CCAGGCATTTCCAAGTAACAAAAAGATACAAGCAAT...GCTCCTGTACTGCACCTTACCTACCATGATGTAATTTTGAACTGAGAGCCAAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| 3UTR CCA 72 bp | TTGACTATGTTGGATTGCTTGTATCTTTTTGTTACTTaGAAATGCCTGGCAGACATGCATGATCTACCACTG | + |
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Preference number: 3 (lower is better) Translates to: LTMLDCLYLFVT*KCLADMHDLPL Trigger: CAGTGGTAGATCATGCATGTCTGCCAGGCATTTCCAAGTAACAAAAAGATACAAGCAATCCAACATAGTCAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| 3UTR GCA 72 bp | AGAATGTACAGTTCCTGGGTATGTTATCCAGTGCCATaGAACCATGCAGTTATTTTTCCTATTTCAAGGATA | + |
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Preference number: 3 (lower is better) Translates to: RMYSSWVCYPVP*NHAVIFPISRI Trigger: TATCCTTGAAATAGGAAAAATAACTGCATGGTTGCATGGCACTGGATAACATACCCAGGAACTGTACATTCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| 3UTR GCA 72 bp | TGCTTAGAATGTACAGTTCCTGGGTATGTTATCCAGTaGCATGCAACCATGCAGTTATTTTTCCTATTTCAA | + |
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Preference number: 3 (lower is better) Translates to: CLECTVPGYVIQ*HATMQLFFLFQ Trigger: TTGAAATAGGAAAAATAACTGCATGGTTGCATGGCACTGGATAACATACCCAGGAACTGTACATTCTAAGCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| 3UTR TCA 72 bp | TCTTTTTGTTACTTGGAAATGCCTGGCAGACATGCATaGTCTACCACTGATTATACTCTTAGAGTCTTAACA | + |
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Preference number: 3 (lower is better) Translates to: SFCYLEMPGRHA*STTDYTLRVLT Trigger: TGTTAAGACTCTAAGAGTATAATCAGTGGTAGATCATGCATGTCTGCCAGGCATTTCCAAGTAACAAAAAGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| 3UTR GCA 72 bp | ATGTTGGATTGCTTGTATCTTTTTGTTACTTGGAAATaGCTGGCAGACATGCATGATCTACCACTGATTATA | + |
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Preference number: 3 (lower is better) Translates to: MLDCLYLFVTWK*LADMHDLPLII Trigger: TATAATCAGTGGTAGATCATGCATGTCTGCCAGGCATTTCCAAGTAACAAAAAGATACAAGCAATCCAACAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| 3UTR-3UTR CAA 90 bp | ATGTTATCCAGTGCCATGCAACCATGCAGTTATTTTTCCTATTTCAAGGATAAAGTATCTTTTTGTTACTaGGAAATGCCTGGCAGACAT | + |
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Preference number: 3 (lower is better) Translates to: MLSSAMQPCSYFSYFKDKVSFCY*EMPGRH Trigger: ATGTCTGCCAGGCATTTCCAAGTAACAAAAAGATAC...TTTATCCTTGAAATAGGAAAAATAACTGCATGGTTGCATGGCACTGGATAACAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| 3UTR-3UTR CAA 90 bp | ATGTTATCCAGTGCCATGCAACCATGCAGTTATTTTTCCTATTTCAAGGATAAAGTTCTAGATCTCAAGTaGACAACTGAGATTAACACA | + |
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Preference number: 3 (lower is better) Translates to: MLSSAMQPCSYFSYFKDKVLDLK*TTEINT Trigger: TGTGTTAATCTCAGTTGTCAACTTGAGATCTAGAAC...TTTATCCTTGAAATAGGAAAAATAACTGCATGGTTGCATGGCACTGGATAACAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS-3UTR CCA 90 bp | TTTTGGCTCTCAGTTCAAAATTACATCATGGTAGGTAAGGTGCAGTACAGGAGCCAGACTCCGCCTCCCTaGGCAGCAGCTCTGTGCAAG | + |
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Preference number: 4 (lower is better) Translates to: FWLSVQNYIMVGKVQYRSQTPPP*AAALCK Trigger: CTTGCACAGAGCTGCTGCCCAGGGAGGCGGAGTCTG...GCTCCTGTACTGCACCTTACCTACCATGATGTAATTTTGAACTGAGAGCCAAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS-3UTR GCA 90 bp | TTTTGGCTCTCAGTTCAAAATTACATCATGGTAGGTAAGGTGCAGTACAGGAGCTGGGCAGCAGCTCTGTaGAAGGCGCAGAGGCGTTCT | + |
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Preference number: 4 (lower is better) Translates to: FWLSVQNYIMVGKVQYRSWAAAL*KAQRRS Trigger: AGAACGCCTCTGCGCCTTGCACAGAGCTGCTGCCCA...GCTCCTGTACTGCACCTTACCTACCATGATGTAATTTTGAACTGAGAGCCAAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS-3UTR GCA 90 bp | TTTTGGCTCTCAGTTCAAAATTACATCATGGTAGGTAAGGTGCAGTACAGGAGCCTGAATGGGGTCCTGTaGCACCTCAGGCAGAGAAAG | + |
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Preference number: 4 (lower is better) Translates to: FWLSVQNYIMVGKVQYRSLNGVL*HLRQRK Trigger: CTTTCTCTGCCTGAGGTGGCACAGGACCCCATTCAG...GCTCCTGTACTGCACCTTACCTACCATGATGTAATTTTGAACTGAGAGCCAAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS-3UTR TCA 90 bp | TTTTGGCTCTCAGTTCAAAATTACATCATGGTAGGTAAGGTGCAGTACAGGAGCCAGGGTTTTCCAGTATaGCCTGGAAGTGCAGCACAC | + |
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Preference number: 4 (lower is better) Translates to: FWLSVQNYIMVGKVQYRSQGFPV*PGSAAH Trigger: GTGTGCTGCACTTCCAGGTCATACTGGAAAACCCTG...GCTCCTGTACTGCACCTTACCTACCATGATGTAATTTTGAACTGAGAGCCAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS-3UTR TCA 90 bp | GAATTTGACTATGTTGGATTGCTTGTATCTTTTTGTTACTTGGAAATGCCTGGCCTGAGTCTGTGGCGCTaGTGGTGCCTATCTGCAGGG | + |
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Preference number: 4 (lower is better) Translates to: EFDYVGLLVSFCYLEMPGLSLWR*WCLSAG Trigger: CCCTGCAGATAGGCACCATCAGCGCCACAGACTCAG...GCCAGGCATTTCCAAGTAACAAAAAGATACAAGCAATCCAACATAGTCAAATTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS-3UTR TCA 90 bp | GAATTTGACTATGTTGGATTGCTTGTATCTTTTTGTTACTTGGAAATGCCTGGCCCAGAGTCTGGCTGCTaGGTGCAGGAGAGCCTTGGT | + |
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Preference number: 4 (lower is better) Translates to: EFDYVGLLVSFCYLEMPGPESGC*VQESLG Trigger: ACCAAGGCTCTCCTGCACTCAGCAGCCAGACTCTGG...GCCAGGCATTTCCAAGTAACAAAAAGATACAAGCAATCCAACATAGTCAAATTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS-3UTR CCA 90 bp | ATGTTATCCAGTGCCATGCAACCATGCAGTTATTTTTCCTATTTCAAGGATAAAAGTGCAGGAGAGCCTTaGTCTGTGGCGCCTACGCGG | + |
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Preference number: 4 (lower is better) Translates to: MLSSAMQPCSYFSYFKDKSAGEP*SVAPTR Trigger: CCGCGTAGGCGCCACAGACCAAGGCTCTCCTGCACT...TTTATCCTTGAAATAGGAAAAATAACTGCATGGTTGCATGGCACTGGATAACAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS-3UTR CCA 90 bp | TTTTGGCTCTCAGTTCAAAATTACATCATGGTAGGTAAGGTGCAGTACAGGAGCTCTCTCCCAGCCTCCTaGACCATTACATTGGGAATC | + |
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Preference number: 4 (lower is better) Translates to: FWLSVQNYIMVGKVQYRSSLPAS*TITLGI Trigger: GATTCCCAATGTAATGGTCCAGGAGGCTGGGAGAGA...GCTCCTGTACTGCACCTTACCTACCATGATGTAATTTTGAACTGAGAGCCAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS-3UTR TCA 90 bp | ATGTTATCCAGTGCCATGCAACCATGCAGTTATTTTTCCTATTTCAAGGATAAATGGTGTGCTGGGTTGTaGGCCTGGGTGTGCCCAAAT | + |
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Preference number: 4 (lower is better) Translates to: MLSSAMQPCSYFSYFKDKWCAGL*AWVCPN Trigger: ATTTGGGCACACCCAGGCTCACAACCCAGCACACCA...TTTATCCTTGAAATAGGAAAAATAACTGCATGGTTGCATGGCACTGGATAACAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS-3UTR CCA 90 bp | TTTTGGCTCTCAGTTCAAAATTACATCATGGTAGGTAAGGTGCAGTACAGGAGCAACACAGTTCCTGGCTaGGCGTTCTCAGGGATTTTT | + |
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Preference number: 4 (lower is better) Translates to: FWLSVQNYIMVGKVQYRSNTVPG*AFSGIF Trigger: AAAAATCCCTGAGAACGCCCAGCCAGGAACTGTGTT...GCTCCTGTACTGCACCTTACCTACCATGATGTAATTTTGAACTGAGAGCCAAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS-3UTR TCA 90 bp | ATGTTATCCAGTGCCATGCAACCATGCAGTTATTTTTCCTATTTCAAGGATAAACCAGTTCTCCAACCCTaGGCCCCAGATCTTTTGCCA | + |
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Preference number: 4 (lower is better) Translates to: MLSSAMQPCSYFSYFKDKPVLQP*APDLLP Trigger: TGGCAAAAGATCTGGGGCTCAGGGTTGGAGAACTGG...TTTATCCTTGAAATAGGAAAAATAACTGCATGGTTGCATGGCACTGGATAACAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS-3UTR GCA 90 bp | GAATTTGACTATGTTGGATTGCTTGTATCTTTTTGTTACTTGGAAATGCCTGGCGTCAGAGTCCTGGGCTaGCTTCAGAGGAAACACAGT | + |
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Preference number: 4 (lower is better) Translates to: EFDYVGLLVSFCYLEMPGVRVLG*LQRKHS Trigger: ACTGTGTTTCCTCTGAAGGCAGCCCAGGACTCTGAC...GCCAGGCATTTCCAAGTAACAAAAAGATACAAGCAATCCAACATAGTCAAATTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS-3UTR GCA 90 bp | TTTTGGCTCTCAGTTCAAAATTACATCATGGTAGGTAAGGTGCAGTACAGGAGCTATTGTACTCAGCTCTaGTCTCTCTATCAAGTGGCC | + |
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Preference number: 4 (lower is better) Translates to: FWLSVQNYIMVGKVQYRSYCTQL*SLYQVA Trigger: GGCCACTTGATAGAGAGAGCAGAGCTGAGTACAATA...GCTCCTGTACTGCACCTTACCTACCATGATGTAATTTTGAACTGAGAGCCAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS-3UTR GCA 90 bp | ATGTTATCCAGTGCCATGCAACCATGCAGTTATTTTTCCTATTTCAAGGATAAAAGTCTGGCTGCTGAGTaGAGGAGAGCCTTGGTCTGT | + |
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Preference number: 4 (lower is better) Translates to: MLSSAMQPCSYFSYFKDKSLAAE*RRALVC Trigger: ACAGACCAAGGCTCTCCTGCACTCAGCAGCCAGACT...TTTATCCTTGAAATAGGAAAAATAACTGCATGGTTGCATGGCACTGGATAACAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS-3UTR CCA 90 bp | ATGTTATCCAGTGCCATGCAACCATGCAGTTATTTTTCCTATTTCAAGGATAAACTAACATCCATCAGGTaGCCAGGGAAGTGGCCCTCA | + |
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Preference number: 4 (lower is better) Translates to: MLSSAMQPCSYFSYFKDKLTSIR*PGKWPS Trigger: TGAGGGCCACTTCCCTGGCCACCTGATGGATGTTAG...TTTATCCTTGAAATAGGAAAAATAACTGCATGGTTGCATGGCACTGGATAACAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| 3UTR CAA 72 bp | AATTACATCATGGTAGGTAAGGTGCAGTACAGGAGCTaGAAGCAACTGGTAACACTGCATCTCAAGCAAGAA | + |
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Preference number: 4 (lower is better) Translates to: NYIMVGKVQYRS*KQLVTLHLKQE Trigger: TTCTTGCTTGAGATGCAGTGTTACCAGTTGCTTCAAGCTCCTGTACTGCACCTTACCTACCATGATGTAATT 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS-3UTR CCA 90 bp | ATGTTATCCAGTGCCATGCAACCATGCAGTTATTTTTCCTATTTCAAGGATAAAAGGAAACACAGTTCCTaGCTGGGCGTTCTCAGGGAT | + |
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Preference number: 4 (lower is better) Translates to: MLSSAMQPCSYFSYFKDKRKHSS*LGVLRD Trigger: ATCCCTGAGAACGCCCAGCCAGGAACTGTGTTTCCT...TTTATCCTTGAAATAGGAAAAATAACTGCATGGTTGCATGGCACTGGATAACAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS-3UTR CCA 90 bp | ATGTTATCCAGTGCCATGCAACCATGCAGTTATTTTTCCTATTTCAAGGATAAACCTATGTCAGAGTCCTaGGCTGCCTTCAGAGGAAAC | + |
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Preference number: 4 (lower is better) Translates to: MLSSAMQPCSYFSYFKDKPMSES*AAFRGN Trigger: GTTTCCTCTGAAGGCAGCCCAGGACTCTGACATAGG...TTTATCCTTGAAATAGGAAAAATAACTGCATGGTTGCATGGCACTGGATAACAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS-3UTR GCA 90 bp | ATGTTATCCAGTGCCATGCAACCATGCAGTTATTTTTCCTATTTCAAGGATAAAAGTATGACCTGGAAGTaGAGCACACAGGGTTCTGTC | + |
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Preference number: 4 (lower is better) Translates to: MLSSAMQPCSYFSYFKDKSMTWK*STQGSV Trigger: GACAGAACCCTGTGTGCTGCACTTCCAGGTCATACT...TTTATCCTTGAAATAGGAAAAATAACTGCATGGTTGCATGGCACTGGATAACAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS-3UTR CCA 90 bp | GAATTTGACTATGTTGGATTGCTTGTATCTTTTTGTTACTTGGAAATGCCTGGCTTTTCCAGTATGACCTaGAAGTGCAGCACACAGGGT | + |
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Preference number: 4 (lower is better) Translates to: EFDYVGLLVSFCYLEMPGFSSMT*KCSTQG Trigger: ACCCTGTGTGCTGCACTTCCAGGTCATACTGGAAAA...GCCAGGCATTTCCAAGTAACAAAAAGATACAAGCAATCCAACATAGTCAAATTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS-3UTR TCA 90 bp | ATGTTATCCAGTGCCATGCAACCATGCAGTTATTTTTCCTATTTCAAGGATAAAAATGGATGTTGGGACTaGCTGTGTAGTTCTGAACGG | + |
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Preference number: 4 (lower is better) Translates to: MLSSAMQPCSYFSYFKDKNGCWD*LCSSER Trigger: CCGTTCAGAACTACACAGTCAGTCCCAACATCCATT...TTTATCCTTGAAATAGGAAAAATAACTGCATGGTTGCATGGCACTGGATAACAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS-3UTR GCA 90 bp | TTTTGGCTCTCAGTTCAAAATTACATCATGGTAGGTAAGGTGCAGTACAGGAGCTTTATATCAGTGAGCTaGAGTTCAGTTTGGAAGAAC | + |
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Preference number: 4 (lower is better) Translates to: FWLSVQNYIMVGKVQYRSFISVS*SSVWKN Trigger: GTTCTTCCAAACTGAACTGCAGCTCACTGATATAAA...GCTCCTGTACTGCACCTTACCTACCATGATGTAATTTTGAACTGAGAGCCAAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS-3UTR CCA 90 bp | GAATTTGACTATGTTGGATTGCTTGTATCTTTTTGTTACTTGGAAATGCCTGGCAGCTGCAGTTCAGTTTaGAAGAACTGCACAGGGTTT | + |
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Preference number: 4 (lower is better) Translates to: EFDYVGLLVSFCYLEMPGSCSSV*KNCTGF Trigger: AAACCCTGTGCAGTTCTTCCAAACTGAACTGCAGCT...GCCAGGCATTTCCAAGTAACAAAAAGATACAAGCAATCCAACATAGTCAAATTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS-3UTR CCA 90 bp | ATGTTATCCAGTGCCATGCAACCATGCAGTTATTTTTCCTATTTCAAGGATAAAGGGAACTCTGGAGAGTaGTCGTTTATATCAGTGAGC | + |
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Preference number: 4 (lower is better) Translates to: MLSSAMQPCSYFSYFKDKGNSGE*SFISVS Trigger: GCTCACTGATATAAACGACCACTCTCCAGAGTTCCC...TTTATCCTTGAAATAGGAAAAATAACTGCATGGTTGCATGGCACTGGATAACAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS-3UTR CCA 90 bp | GAATTTGACTATGTTGGATTGCTTGTATCTTTTTGTTACTTGGAAATGCCTGGCCCTGATCATCAACTCTaGAGCGTTGTCATTCACATC | + |
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Preference number: 4 (lower is better) Translates to: EFDYVGLLVSFCYLEMPGPDHQL*SVVIHI Trigger: GATGTGAATGACAACGCTCCAGAGTTGATGATCAGG...GCCAGGCATTTCCAAGTAACAAAAAGATACAAGCAATCCAACATAGTCAAATTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS-3UTR CCA 90 bp | TTTTGGCTCTCAGTTCAAAATTACATCATGGTAGGTAAGGTGCAGTACAGGAGCGGGTTTCAGGAGAAATaGAATATTGTTCTGGATAGA | + |
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Preference number: 4 (lower is better) Translates to: FWLSVQNYIMVGKVQYRSGFQEK*NIVLDR Trigger: TCTATCCAGAACAATATTCCATTTCTCCTGAAACCC...GCTCCTGTACTGCACCTTACCTACCATGATGTAATTTTGAACTGAGAGCCAAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS-3UTR CCA 90 bp | ATGTTATCCAGTGCCATGCAACCATGCAGTTATTTTTCCTATTTCAAGGATAAAGTAATGACGTGGAAATaGATGTTGGGACTGACTGTG | + |
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Preference number: 4 (lower is better) Translates to: MLSSAMQPCSYFSYFKDKVMTWK*MLGLTV Trigger: CACAGTCAGTCCCAACATCCATTTCCACGTCATTAC...TTTATCCTTGAAATAGGAAAAATAACTGCATGGTTGCATGGCACTGGATAACAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS-3UTR GCA 90 bp | GAATTTGACTATGTTGGATTGCTTGTATCTTTTTGTTACTTGGAAATGCCTGGCAAAAAGACTTGCCTTTaGTCTGGCATTTTTGCTAGC | + |
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Preference number: 4 (lower is better) Translates to: EFDYVGLLVSFCYLEMPGKKTCL*SGIFAS Trigger: GCTAGCAAAAATGCCAGAGCAAAGGCAAGTCTTTTT...GCCAGGCATTTCCAAGTAACAAAAAGATACAAGCAATCCAACATAGTCAAATTC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS-3UTR CCA 90 bp | ATGTTATCCAGTGCCATGCAACCATGCAGTTATTTTTCCTATTTCAAGGATAAAACTCTCCTTTTCTTCTaGCATGGAATATCTAGTTGC | + |
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Preference number: 4 (lower is better) Translates to: MLSSAMQPCSYFSYFKDKTLLFF*HGISSC Trigger: GCAACTAGATATTCCATGCCAGAAGAAAAGGAGAGT...TTTATCCTTGAAATAGGAAAAATAACTGCATGGTTGCATGGCACTGGATAACAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS-3UTR CCA 90 bp | ATGTTATCCAGTGCCATGCAACCATGCAGTTATTTTTCCTATTTCAAGGATAAAAGTAATTCTCAAACGTaGGTTTCAGGAGAAATGGAA | + |
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Preference number: 4 (lower is better) Translates to: MLSSAMQPCSYFSYFKDKSNSQT*VSGEME Trigger: TTCCATTTCTCCTGAAACCCACGTTTGAGAATTACT...TTTATCCTTGAAATAGGAAAAATAACTGCATGGTTGCATGGCACTGGATAACAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS GCA 90 bp | CAGGTACAGAGTGAGCATCTCTCCATCCTCCTGAATGGGGTCCTGTaGCACCTCAGGCAGAGAAAGGTAGGGCTGAGAAAAACTATTCAC | + |
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Preference number: 5 (lower is better) Translates to: QVQSEHLSILLNGVL*HLRQRKVGLRKTIH Trigger: GTGAATAGTTTTTCTCAGCCCTACCTTTCTCTGCCTGAGGTGGCACAGGACCCCATTCAGGAGGATGGAGAGATGCTCACTCTGTACCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS-3UTR CAA 90 bp | TTTTGGCTCTCAGTTCAAAATTACATCATGGTAGGTAAGGTGCAGTACAGGAGCCAGGGTATAGGAGGTTaGTGTGAAGGCAGGGGCGTT | + |
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Preference number: 5 (lower is better) Translates to: FWLSVQNYIMVGKVQYRSQGIGG*CEGRGV Trigger: AACGCCCCTGCCTTCACACAAACCTCCTATACCCTG...GCTCCTGTACTGCACCTTACCTACCATGATGTAATTTTGAACTGAGAGCCAAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS CCA 90 bp | TCAGGGATTTTTAGAAGCATTTCCCTGTCAGGGAACTCTGGAGAGTaGTCGTTTATATCAGTGAGCTGCAGTTCAGTTTGGAAGAACTGC | + |
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Preference number: 5 (lower is better) Translates to: SGIFRSISLSGNSGE*SFISVSCSSVWKNC Trigger: GCAGTTCTTCCAAACTGAACTGCAGCTCACTGATATAAACGACCACTCTCCAGAGTTCCCTGACAGGGAAATGCTTCTAAAAATCCCTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS-3UTR CAA 90 bp | GAATTTGACTATGTTGGATTGCTTGTATCTTTTTGTTACTTGGAAATGCCTGGCACGAACAGCTGCCCGTaGTCGGGGTTAATGGAGATT | + |
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Preference number: 5 (lower is better) Translates to: EFDYVGLLVSFCYLEMPGTNSCP*SGLMEI Trigger: AATCTCCATTAACCCCGACAACGGGCAGCTGTTCGT...GCCAGGCATTTCCAAGTAACAAAAAGATACAAGCAATCCAACATAGTCAAATTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS-3UTR CAA 90 bp | GAATTTGACTATGTTGGATTGCTTGTATCTTTTTGTTACTTGGAAATGCCTGGCTCCTTTGTAATGGATTaGAGCTCCTCTAGTGGCCAG | + |
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Preference number: 5 (lower is better) Translates to: EFDYVGLLVSFCYLEMPGSFVMD*SSSSGQ Trigger: CTGGCCACTAGAGGAGCTCAAATCCATTACAAAGGA...GCCAGGCATTTCCAAGTAACAAAAAGATACAAGCAATCCAACATAGTCAAATTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS-3UTR CAA 90 bp | ATGTTATCCAGTGCCATGCAACCATGCAGTTATTTTTCCTATTTCAAGGATAAAAGGAGAAATGGAATATaGTTCTGGATAGAACACACT | + |
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Preference number: 5 (lower is better) Translates to: MLSSAMQPCSYFSYFKDKRRNGI*FWIEHT Trigger: AGTGTGTTCTATCCAGAACAATATTCCATTTCTCCT...TTTATCCTTGAAATAGGAAAAATAACTGCATGGTTGCATGGCACTGGATAACAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS GCA 72 bp | GGTAGCCAGACTCCGCCTCCCTGGGCAGCAGCTCTGTaGAAGGCGCAGAGGCGTTCTGCATCGGGTAGAGCA | + |
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Preference number: 6 (lower is better) Translates to: GSQTPPPWAAAL*KAQRRSASGRA Trigger: TGCTCTACCCGATGCAGAACGCCTCTGCGCCTTGCACAGAGCTGCTGCCCAGGGAGGCGGAGTCTGGCTACC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS GCA 72 bp | AGTGAGCATCTCTCCATCCTCCTGAATGGGGTCCTGTaGCACCTCAGGCAGAGAAAGGTAGGGCTGAGAAAA | + |
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Preference number: 6 (lower is better) Translates to: SEHLSILLNGVL*HLRQRKVGLRK Trigger: TTTTCTCAGCCCTACCTTTCTCTGCCTGAGGTGGCACAGGACCCCATTCAGGAGGATGGAGAGATGCTCACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS CCA 72 bp | CACGTTTGCCACCAAATAGCCACTCTCCTTTTCTTCTaGCATGGAATATCTAGTTGCCCCAGAGCCAGACTT | + |
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Preference number: 6 (lower is better) Translates to: HVCHQIATLLFF*HGISSCPRARL Trigger: AAGTCTGGCTCTGGGGCAACTAGATATTCCATGCCAGAAGAAAAGGAGAGTGGCTATTTGGTGGCAAACGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS CAA 90 bp | ACTTCTCTCCCAGCCTCCTGGACCATTACATTGGGAATCATGGGTTaGAGGAATTTAAACTCACCAGTCCTAGAGTCTCCTGATAGACAC | + |
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Preference number: 6 (lower is better) Translates to: TSLPASWTITLGIMG*RNLNSPVLESPDRH Trigger: GTGTCTATCAGGAGACTCTAGGACTGGTGAGTTTAAATTCCTCAAACCCATGATTCCCAATGTAATGGTCCAGGAGGCTGGGAGAGAAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS CAA 72 bp | CCAGCCTCCTGGACCATTACATTGGGAATCATGGGTTaGAGGAATTTAAACTCACCAGTCCTAGAGTCTCCT | + |
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Preference number: 6 (lower is better) Translates to: PASWTITLGIMG*RNLNSPVLESP Trigger: AGGAGACTCTAGGACTGGTGAGTTTAAATTCCTCAAACCCATGATTCCCAATGTAATGGTCCAGGAGGCTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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| CDS CCA 72 bp | TTTAGAAGCATTTCCCTGTCAGGGAACTCTGGAGAGTaGTCGTTTATATCAGTGAGCTGCAGTTCAGTTTGG | + |
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Preference number: 6 (lower is better) Translates to: FRSISLSGNSGE*SFISVSCSSVW Trigger: CCAAACTGAACTGCAGCTCACTGATATAAACGACCACTCTCCAGAGTTCCCTGACAGGGAAATGCTTCTAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053073.6 |
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