Pregenerated sensors for PCDHB10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045657Ensembl transcript IDs: ENSMUST00000051126.4
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | TATTGTGAACTAAGTAAACACTTTGGTAATGGAGGACATGCATACACTTTGACTTGGTGTGCTGGGTTGTaGGCCTGGGGGTGCCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: YCELSKHFGNGGHAYTLTWCAGL*AWGCPG Trigger: ACCTGGGCACCCCCAGGCTCACAACCCAGCACACCA...AGTCAAAGTGTATGCATGTCCTCCATTACCAAAGTGTTTACTTAGTTCACAATA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS-3UTR GCA 90 bp | AAGTACAGTGGATATTGTGAACTAAGTAAACACTTTGGTAATGGAGGACATGCAAGGGTTCTGTCGCCCTaGACAGCACCTCACGGTCTG | + |
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Preference number: 4 (lower is better) Translates to: KYSGYCELSKHFGNGGHARVLSP*TAPHGL Trigger: CAGACCGTGAGGTGCTGTGCAGGGCGACAGAACCCT...TGCATGTCCTCCATTACCAAAGTGTTTACTTAGTTCACAATATCCACTGTACTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS-3UTR TCA 90 bp | TGTGAACTAAGTAAACACTTTGGTAATGGAGGACATGCATACACTTTGACTACACATAGTCCAGAGCCCTaGGTGCGAACAGCTGCCCAT | + |
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Preference number: 4 (lower is better) Translates to: CELSKHFGNGGHAYTLTTHSPEP*VRTAAH Trigger: ATGGGCAGCTGTTCGCACTCAGGGCTCTGGACTATG...TGTAGTCAAAGTGTATGCATGTCCTCCATTACCAAAGTGTTTACTTAGTTCACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS-3UTR TCA 90 bp | TATTGTGAACTAAGTAAACACTTTGGTAATGGAGGACATGCATACACTTTGACTGCAACACATGCAGTGTaGCACTGGCAGAGCGCGGAG | + |
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Preference number: 4 (lower is better) Translates to: YCELSKHFGNGGHAYTLTATHAV*HWQSAE Trigger: CTCCGCGCTCTGCCAGTGTCACACTGCATGTGTTGC...AGTCAAAGTGTATGCATGTCCTCCATTACCAAAGTGTTTACTTAGTTCACAATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS-3UTR CCA 90 bp | TGTGAACTAAGTAAACACTTTGGTAATGGAGGACATGCATACACTTTGACTACACTGCCTCCGCAGCTCTaGGTACTAGCTCCTTACAGG | + |
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Preference number: 4 (lower is better) Translates to: CELSKHFGNGGHAYTLTTLPPQL*VLAPYR Trigger: CCTGTAAGGAGCTAGTACCCAGAGCTGCGGAGGCAG...TGTAGTCAAAGTGTATGCATGTCCTCCATTACCAAAGTGTTTACTTAGTTCACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS-3UTR TCA 90 bp | TGTGAACTAAGTAAACACTTTGGTAATGGAGGACATGCATACACTTTGACTACATGGAGACAAGAGAGGTaGGGGTCAGCTGCGGATCAT | + |
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Preference number: 4 (lower is better) Translates to: CELSKHFGNGGHAYTLTTWRQER*GSAADH Trigger: ATGATCCGCAGCTGACCCTCACCTCTCTTGTCTCCA...TGTAGTCAAAGTGTATGCATGTCCTCCATTACCAAAGTGTTTACTTAGTTCACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS-3UTR GCA 90 bp | TGTGAACTAAGTAAACACTTTGGTAATGGAGGACATGCATACACTTTGACTACAGTCAGGGTCCTGGGCTaGCTTCAGAGGAAACGTTGT | + |
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Preference number: 4 (lower is better) Translates to: CELSKHFGNGGHAYTLTTVRVLG*LQRKRC Trigger: ACAACGTTTCCTCTGAAGGCAGCCCAGGACCCTGAC...TGTAGTCAAAGTGTATGCATGTCCTCCATTACCAAAGTGTTTACTTAGTTCACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS-3UTR GCA 90 bp | TGTGAACTAAGTAAACACTTTGGTAATGGAGGACATGCATACACTTTGACTACAAAAGTGAGTTCAGGCTaGTCCTCCCTGTCCAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: CELSKHFGNGGHAYTLTTKVSSG*SSLSRA Trigger: AGCCCTGGACAGGGAGGAGCAGCCTGAACTCACTTT...TGTAGTCAAAGTGTATGCATGTCCTCCATTACCAAAGTGTTTACTTAGTTCACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS-3UTR CCA 90 bp | AAGTACAGTGGATATTGTGAACTAAGTAAACACTTTGGTAATGGAGGACATGCACCTATGTCAGGGTCCTaGGCTGCCTTCAGAGGAAAC | + |
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Preference number: 4 (lower is better) Translates to: KYSGYCELSKHFGNGGHAPMSGS*AAFRGN Trigger: GTTTCCTCTGAAGGCAGCCCAGGACCCTGACATAGG...TGCATGTCCTCCATTACCAAAGTGTTTACTTAGTTCACAATATCCACTGTACTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS-3UTR GCA 90 bp | TATTGTGAACTAAGTAAACACTTTGGTAATGGAGGACATGCATACACTTTGACTCAGCCTGTGCTTGGGTaGATCTCGCTCACTCAACAG | + |
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Preference number: 4 (lower is better) Translates to: YCELSKHFGNGGHAYTLTQPVLG*ISLTQQ Trigger: CTGTTGAGTGAGCGAGATGCACCCAAGCACAGGCTG...AGTCAAAGTGTATGCATGTCCTCCATTACCAAAGTGTTTACTTAGTTCACAATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS-3UTR CCA 90 bp | TGTGAACTAAGTAAACACTTTGGTAATGGAGGACATGCATACACTTTGACTACACAATGTGAACTTCGGTaGTTCCTGACCTGGGTGGAG | + |
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Preference number: 4 (lower is better) Translates to: CELSKHFGNGGHAYTLTTQCELR*FLTWVE Trigger: CTCCACCCAGGTCAGGAACCACCGAAGTTCACATTG...TGTAGTCAAAGTGTATGCATGTCCTCCATTACCAAAGTGTTTACTTAGTTCACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS-3UTR CCA 90 bp | TATTGTGAACTAAGTAAACACTTTGGTAATGGAGGACATGCATACACTTTGACTCCCTGGCAGAGACTGTaGCAACTAAGGCATCAAGGG | + |
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Preference number: 4 (lower is better) Translates to: YCELSKHFGNGGHAYTLTPWQRL*QLRHQG Trigger: CCCTTGATGCCTTAGTTGCCACAGTCTCTGCCAGGG...AGTCAAAGTGTATGCATGTCCTCCATTACCAAAGTGTTTACTTAGTTCACAATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS-3UTR CCA 90 bp | TATTGTGAACTAAGTAAACACTTTGGTAATGGAGGACATGCATACACTTTGACTACTGTTATGGTGTGCTaGGTTGTGAGCCTGGGGGTG | + |
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Preference number: 4 (lower is better) Translates to: YCELSKHFGNGGHAYTLTTVMVC*VVSLGV Trigger: CACCCCCAGGCTCACAACCCAGCACACCATAACAGT...AGTCAAAGTGTATGCATGTCCTCCATTACCAAAGTGTTTACTTAGTTCACAATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS-3UTR CCA 90 bp | AAGTACAGTGGATATTGTGAACTAAGTAAACACTTTGGTAATGGAGGACATGCAAGCGAGTATGTGATGTaGGCATTGGAGCCTGCGTCT | + |
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Preference number: 4 (lower is better) Translates to: KYSGYCELSKHFGNGGHASEYVM*ALEPAS Trigger: AGACGCAGGCTCCAATGCCCACATCACATACTCGCT...TGCATGTCCTCCATTACCAAAGTGTTTACTTAGTTCACAATATCCACTGTACTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS-3UTR CCA 90 bp | TATTGTGAACTAAGTAAACACTTTGGTAATGGAGGACATGCATACACTTTGACTCTAACATCCACCAGGTaGCCAGGAAAGTGGCCCTCA | + |
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Preference number: 4 (lower is better) Translates to: YCELSKHFGNGGHAYTLTLTSTR*PGKWPS Trigger: TGAGGGCCACTTTCCTGGCCACCTGGTGGATGTTAG...AGTCAAAGTGTATGCATGTCCTCCATTACCAAAGTGTTTACTTAGTTCACAATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS-3UTR TCA 90 bp | TGTGAACTAAGTAAACACTTTGGTAATGGAGGACATGCATACACTTTGACTACACACAGTGCATTTTCCTaGAAAGCCTCCTGGGTCTGT | + |
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Preference number: 4 (lower is better) Translates to: CELSKHFGNGGHAYTLTTHSAFS*KASWVC Trigger: ACAGACCCAGGAGGCTTTTCAGGAAAATGCACTGTG...TGTAGTCAAAGTGTATGCATGTCCTCCATTACCAAAGTGTTTACTTAGTTCACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS-3UTR GCA 90 bp | AAGTACAGTGGATATTGTGAACTAAGTAAACACTTTGGTAATGGAGGACATGCAGTCTCTGCATCCAGCTaGAAGAGCTCTTTGTTTCCT | + |
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Preference number: 4 (lower is better) Translates to: KYSGYCELSKHFGNGGHAVSASS*KSSLFP Trigger: AGGAAACAAAGAGCTCTTGCAGCTGGATGCAGAGAC...TGCATGTCCTCCATTACCAAAGTGTTTACTTAGTTCACAATATCCACTGTACTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS-3UTR GCA 90 bp | TGTGAACTAAGTAAACACTTTGGTAATGGAGGACATGCATACACTTTGACTACACTGAGTGCGAACAGCTaGCCATTGTCTTCATTGATG | + |
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Preference number: 4 (lower is better) Translates to: CELSKHFGNGGHAYTLTTLSANS*PLSSLM Trigger: CATCAATGAAGACAATGGGCAGCTGTTCGCACTCAG...TGTAGTCAAAGTGTATGCATGTCCTCCATTACCAAAGTGTTTACTTAGTTCACA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS-3UTR CCA 90 bp | TGTGAACTAAGTAAACACTTTGGTAATGGAGGACATGCATACACTTTGACTACAGTAACCACATGGAAATaGAGGTTGGGACTGACTGTG | + |
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Preference number: 4 (lower is better) Translates to: CELSKHFGNGGHAYTLTTVTTWK*RLGLTV Trigger: CACAGTCAGTCCCAACCTCCATTTCCATGTGGTTAC...TGTAGTCAAAGTGTATGCATGTCCTCCATTACCAAAGTGTTTACTTAGTTCACA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS-3UTR GCA 90 bp | AAGTACAGTGGATATTGTGAACTAAGTAAACACTTTGGTAATGGAGGACATGCAGAGAGTAGGCTACCTTaGCATATATCCCAGCATCTA | + |
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Preference number: 4 (lower is better) Translates to: KYSGYCELSKHFGNGGHAESRLP*HISQHL Trigger: TAGATGCTGGGATATATGGCAAGGTAGCCTACTCTC...TGCATGTCCTCCATTACCAAAGTGTTTACTTAGTTCACAATATCCACTGTACTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS-3UTR CCA 90 bp | TATTGTGAACTAAGTAAACACTTTGGTAATGGAGGACATGCATACACTTTGACTCCGGTCAGGGAACTCTaGAGAGTGGTCATTTATATC | + |
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Preference number: 4 (lower is better) Translates to: YCELSKHFGNGGHAYTLTPVREL*RVVIYI Trigger: GATATAAATGACCACTCTCCAGAGTTCCCTGACCGG...AGTCAAAGTGTATGCATGTCCTCCATTACCAAAGTGTTTACTTAGTTCACAATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS-3UTR CCA 90 bp | TATTGTGAACTAAGTAAACACTTTGGTAATGGAGGACATGCATACACTTTGACTCTGAGAGTAACCACATaGAAATGGAGGTTGGGACTG | + |
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Preference number: 4 (lower is better) Translates to: YCELSKHFGNGGHAYTLTLRVTT*KWRLGL Trigger: CAGTCCCAACCTCCATTTCCATGTGGTTACTCTCAG...AGTCAAAGTGTATGCATGTCCTCCATTACCAAAGTGTTTACTTAGTTCACAATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS-3UTR TCA 90 bp | AAGTACAGTGGATATTGTGAACTAAGTAAACACTTTGGTAATGGAGGACATGCAGGTCATTTATATCTGTaGGCTGCAGTTCAGTTTGGA | + |
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Preference number: 4 (lower is better) Translates to: KYSGYCELSKHFGNGGHAGHLYL*AAVQFG Trigger: TCCAAACTGAACTGCAGCTCACAGATATAAATGACC...TGCATGTCCTCCATTACCAAAGTGTTTACTTAGTTCACAATATCCACTGTACTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS-3UTR GCA 90 bp | TGTGAACTAAGTAAACACTTTGGTAATGGAGGACATGCATACACTTTGACTACAGAGCCCCAGATCTTTTaGCAAATTAGCCACCAAATA | + |
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Preference number: 4 (lower is better) Translates to: CELSKHFGNGGHAYTLTTEPQIF*QISHQI Trigger: TATTTGGTGGCTAATTTGGCAAAAGATCTGGGGCTC...TGTAGTCAAAGTGTATGCATGTCCTCCATTACCAAAGTGTTTACTTAGTTCACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS-3UTR CCA 90 bp | TATTGTGAACTAAGTAAACACTTTGGTAATGGAGGACATGCATACACTTTGACTTTTTCCAGTATGATCTaGAAGTGCAGCACACAGGGT | + |
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Preference number: 4 (lower is better) Translates to: YCELSKHFGNGGHAYTLTFSSMI*KCSTQG Trigger: ACCCTGTGTGCTGCACTTCCAGATCATACTGGAAAA...AGTCAAAGTGTATGCATGTCCTCCATTACCAAAGTGTTTACTTAGTTCACAATA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS-3UTR TCA 90 bp | AAGTACAGTGGATATTGTGAACTAAGTAAACACTTTGGTAATGGAGGACATGCAGATAGAACTATTGAGTaGAGATATGGTGAGCTTAGG | + |
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Preference number: 4 (lower is better) Translates to: KYSGYCELSKHFGNGGHADRTIE*RYGELR Trigger: CCTAAGCTCACCATATCTTCACTCAATAGTTCTATC...TGCATGTCCTCCATTACCAAAGTGTTTACTTAGTTCACAATATCCACTGTACTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS-3UTR TCA 90 bp | TATTGTGAACTAAGTAAACACTTTGGTAATGGAGGACATGCATACACTTTGACTAGAAATGAGGAAAAGTaGAGACACAGATGCCAAAGC | + |
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Preference number: 4 (lower is better) Translates to: YCELSKHFGNGGHAYTLTRNEEK*RHRCQS Trigger: GCTTTGGCATCTGTGTCTTCACTTTTCCTCATTTCT...AGTCAAAGTGTATGCATGTCCTCCATTACCAAAGTGTTTACTTAGTTCACAATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS-3UTR GCA 90 bp | TATTGTGAACTAAGTAAACACTTTGGTAATGGAGGACATGCATACACTTTGACTTCAGTTTGGAAGAACTaGACAGGGTTTTCCAGTATG | + |
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Preference number: 4 (lower is better) Translates to: YCELSKHFGNGGHAYTLTSVWKN*TGFSSM Trigger: CATACTGGAAAACCCTGTGCAGTTCTTCCAAACTGA...AGTCAAAGTGTATGCATGTCCTCCATTACCAAAGTGTTTACTTAGTTCACAATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS-3UTR GCA 90 bp | TGTGAACTAAGTAAACACTTTGGTAATGGAGGACATGCATACACTTTGACTACATGTTGTATTCAGCTTTaGTCTCTCTATCAAGTGTCC | + |
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Preference number: 4 (lower is better) Translates to: CELSKHFGNGGHAYTLTTCCIQL*SLYQVS Trigger: GGACACTTGATAGAGAGAGCAAAGCTGAATACAACA...TGTAGTCAAAGTGTATGCATGTCCTCCATTACCAAAGTGTTTACTTAGTTCACA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS-3UTR TCA 90 bp | TATTGTGAACTAAGTAAACACTTTGGTAATGGAGGACATGCATACACTTTGACTAATGGAAGTTCGTTCTaGATAGAACACACCATCCTT | + |
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Preference number: 4 (lower is better) Translates to: YCELSKHFGNGGHAYTLTNGSSF*IEHTIL Trigger: AAGGATGGTGTGTTCTATTCAGAACGAACTTCCATT...AGTCAAAGTGTATGCATGTCCTCCATTACCAAAGTGTTTACTTAGTTCACAATA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS-3UTR GCA 90 bp | TGTGAACTAAGTAAACACTTTGGTAATGGAGGACATGCATACACTTTGACTACATTTATATCTGTGAGCTaGAGTTCAGTTTGGAAGAAC | + |
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Preference number: 4 (lower is better) Translates to: CELSKHFGNGGHAYTLTTFISVS*SSVWKN Trigger: GTTCTTCCAAACTGAACTGCAGCTCACAGATATAAA...TGTAGTCAAAGTGTATGCATGTCCTCCATTACCAAAGTGTTTACTTAGTTCACA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS-3UTR CCA 90 bp | TGTGAACTAAGTAAACACTTTGGTAATGGAGGACATGCATACACTTTGACTACAGGACTTCAAAAGAAATaGAAGTTCGTTCTGAATAGA | + |
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Preference number: 4 (lower is better) Translates to: CELSKHFGNGGHAYTLTTGLQKK*KFVLNR Trigger: TCTATTCAGAACGAACTTCCATTTCTTTTGAAGTCC...TGTAGTCAAAGTGTATGCATGTCCTCCATTACCAAAGTGTTTACTTAGTTCACA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS TCA 90 bp | CTATCCCTGCAGTGCGGACTTTCCTTCACTTCTCTCTCAGGGTCCTaGACCATTAAGTTGGAGATCATGGGTTTAAGGAATTTGAACTCA | + |
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Preference number: 5 (lower is better) Translates to: LSLQCGLSFTSLSGS*TIKLEIMGLRNLNS Trigger: TGAGTTCAAATTCCTTAAACCCATGATCTCCAACTTAATGGTTCAGGACCCTGAGAGAGAAGTGAAGGAAAGTCCGCACTGCAGGGATAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS-3UTR CAA 90 bp | TATTGTGAACTAAGTAAACACTTTGGTAATGGAGGACATGCATACACTTTGACTAAGGGCTCATTGTCATaGTCGTCCAGCACCACCACG | + |
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Preference number: 5 (lower is better) Translates to: YCELSKHFGNGGHAYTLTKGSLS*SSSTTT Trigger: CGTGGTGGTGCTGGACGACAATGACAATGAGCCCTT...AGTCAAAGTGTATGCATGTCCTCCATTACCAAAGTGTTTACTTAGTTCACAATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS-3UTR CAA 90 bp | TATTGTGAACTAAGTAAACACTTTGGTAATGGAGGACATGCATACACTTTGACTGCGAACAGCTGCCCATaGTCTTCATTGATGGAGACA | + |
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Preference number: 5 (lower is better) Translates to: YCELSKHFGNGGHAYTLTANSCP*SSLMET Trigger: TGTCTCCATCAATGAAGACAATGGGCAGCTGTTCGC...AGTCAAAGTGTATGCATGTCCTCCATTACCAAAGTGTTTACTTAGTTCACAATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS-3UTR CAA 90 bp | TGTGAACTAAGTAAACACTTTGGTAATGGAGGACATGCATACACTTTGACTACATCTGGGATAGAACTATaGAGTGAAGATATGGTGAGC | + |
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Preference number: 5 (lower is better) Translates to: CELSKHFGNGGHAYTLTTSGIEL*SEDMVS Trigger: GCTCACCATATCTTCACTCAATAGTTCTATCCCAGA...TGTAGTCAAAGTGTATGCATGTCCTCCATTACCAAAGTGTTTACTTAGTTCACA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS-3UTR CAA 90 bp | TGTGAACTAAGTAAACACTTTGGTAATGGAGGACATGCATACACTTTGACTACAACGGAGATAGTAATGTaGTATTCAGCTTTGCTCTCT | + |
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Preference number: 5 (lower is better) Translates to: CELSKHFGNGGHAYTLTTTEIVM*YSALLS Trigger: AGAGAGCAAAGCTGAATACAACATTACTATCTCCGT...TGTAGTCAAAGTGTATGCATGTCCTCCATTACCAAAGTGTTTACTTAGTTCACA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS-3UTR CAA 90 bp | TATTGTGAACTAAGTAAACACTTTGGTAATGGAGGACATGCATACACTTTGACTATGTTGTATTCAGCTTaGCTCTCTCTATCAAGTGTC | + |
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Preference number: 5 (lower is better) Translates to: YCELSKHFGNGGHAYTLTMLYSA*LSLSSV Trigger: GACACTTGATAGAGAGAGCAAAGCTGAATACAACAT...AGTCAAAGTGTATGCATGTCCTCCATTACCAAAGTGTTTACTTAGTTCACAATA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS GCA 72 bp | CTGAACAGCATTGCTCCCTATGTCAGGGTCCTGGGCTaGCTTCAGAGGAAACGTTGTCCCTGGCTGGGCGCT | + |
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Preference number: 6 (lower is better) Translates to: LNSIAPYVRVLG*LQRKRCPWLGA Trigger: AGCGCCCAGCCAGGGACAACGTTTCCTCTGAAGGCAGCCCAGGACCCTGACATAGGGAGCAATGCTGTTCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS CCA 72 bp | TCCTGGGCTGCCTTCAGAGGAAACGTTGTCCCTGGCTaGGCGCTCTCAGGGATTTTCAGTAGCATTTTCCGG | + |
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Preference number: 6 (lower is better) Translates to: SWAAFRGNVVPG*ALSGIFSSIFR Trigger: CCGGAAAATGCTACTGAAAATCCCTGAGAGCGCCCAGCCAGGGACAACGTTTCCTCTGAAGGCAGCCCAGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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| CDS CAA 72 bp | AGAGCCCTGAGTGCGAACAGCTGCCCATTGTCTTCATaGATGGAGACAAGAGAGGTGAGGGTCAGCTGCGGA | + |
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Preference number: 6 (lower is better) Translates to: RALSANSCPLSS*METREVRVSCG Trigger: TCCGCAGCTGACCCTCACCTCTCTTGTCTCCATCAATGAAGACAATGGGCAGCTGTTCGCACTCAGGGCTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051126.4 |
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