Pregenerated sensors for PCDHB1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000051663Ensembl transcript IDs: ENSMUST00000052366.5
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CCTGAGCACGGTACACCAAGCGAGAGAACTGGGGCACGTGGTCATTaGCGTCCAGGACAACCACTCGAATGTTGGCGGTGCCAGACTTGG | + |
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Preference number: 5 (lower is better) Translates to: PEHGTPSERTGARGH*RPGQPLECWRCQTW Trigger: CCAAGTCTGGCACCGCCAACATTCGAGTGGTTGTCCTGGACGTCAATGACCACGTGCCCCAGTTCTCTCGCTTGGTGTACCGTGCTCAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS CCA 90 bp | CAAACGAACCGCTCTCCATCTCCTCCGCCACCGAATAGCGGATTGTaGCCGCGCCTCCCACAGACACACACCAGAGAAGGAAAAGAGAGC | + |
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Preference number: 5 (lower is better) Translates to: QTNRSPSPPPPNSGL*PRLPQTHTREGKES Trigger: GCTCTCTTTTCCTTCTCTGGTGTGTGTCTGTGGGAGGCGCGGCCACAATCCGCTATTCGGTGGCGGAGGAGATGGAGAGCGGTTCGTTTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS CCA 90 bp | TGTGGCAGTCACCACCACCACCAAAGAGCCATTGTCGCTGTTCTCTaGCACCTGAGCACGGTACACCAAGCGAGAGAACTGGGGCACGTG | + |
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Preference number: 5 (lower is better) Translates to: CGSHHHHQRAIVAVL*HLSTVHQARELGHV Trigger: CACGTGCCCCAGTTCTCTCGCTTGGTGTACCGTGCTCAGGTGCCAGAGAACAGCGACAATGGCTCTTTGGTGGTGGTGGTGACTGCCACA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS TCA 90 bp | GTCACCACCACCACCAAAGAGCCATTGTCGCTGTTCTCTGGCACCTaGGCACGGTACACCAAGCGAGAGAACTGGGGCACGTGGTCATTG | + |
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Preference number: 5 (lower is better) Translates to: VTTTTKEPLSLFSGT*ARYTKRENWGTWSL Trigger: CAATGACCACGTGCCCCAGTTCTCTCGCTTGGTGTACCGTGCTCAGGTGCCAGAGAACAGCGACAATGGCTCTTTGGTGGTGGTGGTGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS GCA 90 bp | TTCTCTTTGACGAACAAATCTCCAGTCTTGCGGTGGAGCCGGAAATaGAACCTGTTACCCTCGGCAACTAGACGCGCCCCACGCTCTGCC | + |
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Preference number: 5 (lower is better) Translates to: FSLTNKSPVLRWSRK*NLLPSATRRAPRSA Trigger: GGCAGAGCGTGGGGCGCGTCTAGTTGCCGAGGGTAACAGGTTGCATTTCCGGCTCCACCGCAAGACTGGAGATTTGTTCGTCAAAGAGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS GCA 90 bp | TCCACCCGGAAGGACTGCAGCGGCTCGGCCAGAATAATTTCAAAATaGAGCACACACGGGTCAGATTTGCCACAAAGTGCCTCGCGATCT | + |
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Preference number: 5 (lower is better) Translates to: STRKDCSGSARIISK*STHGSDLPQSASRS Trigger: AGATCGCGAGGCACTTTGTGGCAAATCTGACCCGTGTGTGCTGCATTTTGAAATTATTCTGGCCGAGCCGCTGCAGTCCTTCCGGGTGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS GCA 90 bp | TTCAGGCTGCGCCTCTCTATCCAGGGGATTATCCAGCACAAGTTCTaGATATTTAGGACCGTGGCTTCGGAAGCGTGTGTGCAGGTGGAA | + |
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Preference number: 5 (lower is better) Translates to: FRLRLSIQGIIQHKF*IFRTVASEACVQVE Trigger: TTCCACCTGCACACACGCTTCCGAAGCCACGGTCCTAAATATGCAGAACTTGTGCTGGATAATCCCCTGGATAGAGAGGCGCAGCCTGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS GCA 90 bp | GCATTGTCGTTGATATCAAATACTCTGACTTCCACCCGGAAGGACTaGAGCGGCTCGGCCAGAATAATTTCAAAATGCAGCACACACGGG | + |
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Preference number: 5 (lower is better) Translates to: ALSLISNTLTSTRKD*SGSARIISKCSTHG Trigger: CCCGTGTGTGCTGCATTTTGAAATTATTCTGGCCGAGCCGCTGCAGTCCTTCCGGGTGGAAGTCAGAGTATTTGATATCAACGACAATGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS GCA 90 bp | TCTGCAGACCTTGGTACTAGGTCATTGCAGGGCAAAGTGCCATTCTaGAGTGGGTACAAGATCATTGGACGATTGTCATTGTCGTCCAGG | + |
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Preference number: 5 (lower is better) Translates to: SADLGTRSLQGKVPF*SGYKIIGRLSLSSR Trigger: CCTGGACGACAATGACAATCGTCCAATGATCTTGTACCCACTGCAGAATGGCACTTTGCCCTGCAATGACCTAGTACCAAGGTCTGCAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS CCA 90 bp | CTAAAGAATAAGTTATCTGCTTGTTGGTGCCCTCATCCAGGTCTGTaGCAGTCACCACCACCACCAAAGAGCCATTGTCGCTGTTCTCTG | + |
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Preference number: 5 (lower is better) Translates to: LKNKLSACWCPHPGL*QSPPPPKSHCRCSL Trigger: CAGAGAACAGCGACAATGGCTCTTTGGTGGTGGTGGTGACTGCCACAGACCTGGATGAGGGCACCAACAAGCAGATAACTTATTCTTTAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS CCA 90 bp | ACTGACAGATCACCACTCTTTGGAGGCAGCAGGGAGTATGTTACTTaGGCATTTTCACCCAAATCTAGATCCTCGGCGTGGACTTTGCCA | + |
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Preference number: 5 (lower is better) Translates to: TDRSPLFGGSREYVT*AFSPKSRSSAWTLP Trigger: TGGCAAAGTCCACGCCGAGGATCTAGATTTGGGTGAAAATGCCCAAGTAACATACTCCCTGCTGCCTCCAAAGAGTGGTGATCTGTCAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS TCA 90 bp | TCTCTGTGGACAGATTGGGTGGTCCAGTATCCATGGCGACAAGGGTaGTATTATAGCTGGAGACATCCTCTCTATCCAAGCTTCTGTCAG | + |
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Preference number: 5 (lower is better) Translates to: SLWTDWVVQYPWRQG*YYSWRHPLYPSFCQ Trigger: CTGACAGAAGCTTGGATAGAGAGGATGTCTCCAGCTATAATATCACCCTTGTCGCCATGGATACTGGACCACCCAATCTGTCCACAGAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS GCA 90 bp | ATCCTGCCTCTGCAGACCTTGGTACTAGGTCATTGCAGGGCAAAGTaGCATTCTGCAGTGGGTACAAGATCATTGGACGATTGTCATTGT | + |
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Preference number: 5 (lower is better) Translates to: ILPLQTLVLGHCRAK*HSAVGTRSLDDCHC Trigger: ACAATGACAATCGTCCAATGATCTTGTACCCACTGCAGAATGGCACTTTGCCCTGCAATGACCTAGTACCAAGGTCTGCAGAGGCAGGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS CCA 90 bp | TATTTTGTGGTTGGATTTACCTTTCTAGAATGCTTGGATGGATCCTaGAACTGCAAGTATGGCTCTGAAAAGCCATCTACCAGCAGGATG | + |
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Preference number: 5 (lower is better) Translates to: YFVVGFTFLECLDGS*NCKYGSEKPSTSRM Trigger: CATCCTGCTGGTAGATGGCTTTTCAGAGCCATACTTGCAGTTCCAGGATCCATCCAAGCATTCTAGAAAGGTAAATCCAACCACAAAATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS GCA 90 bp | TCTGACAGTAACTTCGCTACTCAACGACAGAAAACCACCATCAGTTaGCTTTACTACAAACTGAAAGTCTTGAATGGCCTCATAATCCAT | + |
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Preference number: 5 (lower is better) Translates to: SDSNFATQRQKTTIS*LYYKLKVLNGLIIH Trigger: ATGGATTATGAGGCCATTCAAGACTTTCAGTTTGTAGTAAAGGCAACTGATGGTGGTTTTCTGTCGTTGAGTAGCGAAGTTACTGTCAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS CCA 90 bp | GTTGTTTTCACGAACAGTCAAGACGTAGGAATCCTCCTGGAAGACTaGAGAATTGTCATTTACATCAGCTATTACCACTTCAATCACAGT | + |
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Preference number: 5 (lower is better) Translates to: VVFTNSQDVGILLED*RIVIYISYYHFNHS Trigger: ACTGTGATTGAAGTGGTAATAGCTGATGTAAATGACAATTCTCCAGTCTTCCAGGAGGATTCCTACGTCTTGACTGTTCGTGAAAACAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS GCA 90 bp | AGAGAAATGACCAAATATTTTGTGGTTGGATTTACCTTTCTAGAATaGTTGGATGGATCCTGGAACTGCAAGTATGGCTCTGAAAAGCCA | + |
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Preference number: 5 (lower is better) Translates to: REMTKYFVVGFTFLE*LDGSWNCKYGSEKP Trigger: TGGCTTTTCAGAGCCATACTTGCAGTTCCAGGATCCATCCAAGCATTCTAGAAAGGTAAATCCAACCACAAAATATTTGGTCATTTCTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS CAA 72 bp | AACCGCTCTCCATCTCCTCCGCCACCGAATAGCGGATaGTGGCCGCGCCTCCCACAGACACACACCAGAGAA | + |
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Preference number: 6 (lower is better) Translates to: NRSPSPPPPNSG*WPRLPQTHTRE Trigger: TTCTCTGGTGTGTGTCTGTGGGAGGCGCGGCCACAATCCGCTATTCGGTGGCGGAGGAGATGGAGAGCGGTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS CAA 90 bp | CCACAAACGAACCGCTCTCCATCTCCTCCGCCACCGAATAGCGGATaGTGGCCGCGCCTCCCACAGACACACACCAGAGAAGGAAAAGAG | + |
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Preference number: 6 (lower is better) Translates to: PQTNRSPSPPPPNSG*WPRLPQTHTREGKE Trigger: CTCTTTTCCTTCTCTGGTGTGTGTCTGTGGGAGGCGCGGCCACAATCCGCTATTCGGTGGCGGAGGAGATGGAGAGCGGTTCGTTTGTGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS TCA 72 bp | GGTACACCAAGCGAGAGAACTGGGGCACGTGGTCATTaGCGTCCAGGACAACCACTCGAATGTTGGCGGTGC | + |
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Preference number: 6 (lower is better) Translates to: GTPSERTGARGH*RPGQPLECWRC Trigger: GCACCGCCAACATTCGAGTGGTTGTCCTGGACGTCAATGACCACGTGCCCCAGTTCTCTCGCTTGGTGTACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS TCA 72 bp | ACCACCAAAGAGCCATTGTCGCTGTTCTCTGGCACCTaGGCACGGTACACCAAGCGAGAGAACTGGGGCACG | + |
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Preference number: 6 (lower is better) Translates to: TTKEPLSLFSGT*ARYTKRENWGT Trigger: CGTGCCCCAGTTCTCTCGCTTGGTGTACCGTGCTCAGGTGCCAGAGAACAGCGACAATGGCTCTTTGGTGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS GCA 72 bp | ACGAACAAATCTCCAGTCTTGCGGTGGAGCCGGAAATaGAACCTGTTACCCTCGGCAACTAGACGCGCCCCA | + |
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Preference number: 6 (lower is better) Translates to: TNKSPVLRWSRK*NLLPSATRRAP Trigger: TGGGGCGCGTCTAGTTGCCGAGGGTAACAGGTTGCATTTCCGGCTCCACCGCAAGACTGGAGATTTGTTCGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS CCA 72 bp | CACCACCACCACCAAAGAGCCATTGTCGCTGTTCTCTaGCACCTGAGCACGGTACACCAAGCGAGAGAACTG | + |
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Preference number: 6 (lower is better) Translates to: HHHHQRAIVAVL*HLSTVHQAREL Trigger: CAGTTCTCTCGCTTGGTGTACCGTGCTCAGGTGCCAGAGAACAGCGACAATGGCTCTTTGGTGGTGGTGGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS GCA 72 bp | GTCTCGGATAGTGAAGAGAGCAACTACAGTCTGGAGTaGAGAGTCCTCAGGAAGAGGGCTGGACACCGAGGA | + |
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Preference number: 6 (lower is better) Translates to: VSDSEESNYSLE*RVLRKRAGHRG Trigger: TCCTCGGTGTCCAGCCCTCTTCCTGAGGACTCTGCACTCCAGACTGTAGTTGCTCTCTTCACTATCCGAGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS CAA 90 bp | GCGTGTGTGCAGGTGGAAATAGGTGTTTGCACTCAGGGTGTAGTTTaGGAGACCGTTGAGTCCCACGTCCAAATCCTGGGCACTCTGCAG | + |
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Preference number: 6 (lower is better) Translates to: ACVQVEIGVCTQGVV*ETVESHVQILGTLQ Trigger: CTGCAGAGTGCCCAGGATTTGGACGTGGGACTCAACGGTCTCCAAAACTACACCCTGAGTGCAAACACCTATTTCCACCTGCACACACGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS GCA 72 bp | GGTATCCTGCCTCTGCAGACCTTGGTACTAGGTCATTaGAGGGCAAAGTGCCATTCTGCAGTGGGTACAAGA | + |
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Preference number: 6 (lower is better) Translates to: GILPLQTLVLGH*RAKCHSAVGTR Trigger: TCTTGTACCCACTGCAGAATGGCACTTTGCCCTGCAATGACCTAGTACCAAGGTCTGCAGAGGCAGGATACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS CAA 72 bp | CAGGTGGAAATAGGTGTTTGCACTCAGGGTGTAGTTTaGGAGACCGTTGAGTCCCACGTCCAAATCCTGGGC | + |
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Preference number: 6 (lower is better) Translates to: QVEIGVCTQGVV*ETVESHVQILG Trigger: GCCCAGGATTTGGACGTGGGACTCAACGGTCTCCAAAACTACACCCTGAGTGCAAACACCTATTTCCACCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS CAA 90 bp | AGTGCCTCGCGATCTAGTTTCTCTTTGACGAACAAATCTCCAGTCTaGCGGTGGAGCCGGAAATGCAACCTGTTACCCTCGGCAACTAGA | + |
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Preference number: 6 (lower is better) Translates to: SASRSSFSLTNKSPV*RWSRKCNLLPSATR Trigger: TCTAGTTGCCGAGGGTAACAGGTTGCATTTCCGGCTCCACCGCAAGACTGGAGATTTGTTCGTCAAAGAGAAACTAGATCGCGAGGCACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS GCA 72 bp | AAGGACTGCAGCGGCTCGGCCAGAATAATTTCAAAATaGAGCACACACGGGTCAGATTTGCCACAAAGTGCC | + |
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Preference number: 6 (lower is better) Translates to: KDCSGSARIISK*STHGSDLPQSA Trigger: GGCACTTTGTGGCAAATCTGACCCGTGTGTGCTGCATTTTGAAATTATTCTGGCCGAGCCGCTGCAGTCCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS GCA 72 bp | GGGCACTCTGCAGTGGAAAGCGTGAGCCCAAGGGGGTaGTCTCTGGAATCTTTAAAAGAGGCTCTTTGTTTA | + |
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Preference number: 6 (lower is better) Translates to: GHSAVESVSPRG*SLESLKEALCL Trigger: TAAACAAAGAGCCTCTTTTAAAGATTCCAGAGAGCACCCCCTTGGGCTCACGCTTTCCACTGCAGAGTGCCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS GCA 72 bp | CCATCCACAGCTGTAATGGTCAAGTTGACTTCAGGCTaGGCCTCTCTATCCAGGGGATTATCCAGCACAAGT | + |
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Preference number: 6 (lower is better) Translates to: PSTAVMVKLTSG*ASLSRGLSSTS Trigger: ACTTGTGCTGGATAATCCCCTGGATAGAGAGGCGCAGCCTGAAGTCAACTTGACCATTACAGCTGTGGATGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS GCA 72 bp | CTGCAGACCTTGGTACTAGGTCATTGCAGGGCAAAGTaGCATTCTGCAGTGGGTACAAGATCATTGGACGAT | + |
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Preference number: 6 (lower is better) Translates to: LQTLVLGHCRAK*HSAVGTRSLDD Trigger: ATCGTCCAATGATCTTGTACCCACTGCAGAATGGCACTTTGCCCTGCAATGACCTAGTACCAAGGTCTGCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS CCA 72 bp | AGTTTCTCTTTGACGAACAAATCTCCAGTCTTGCGGTaGAGCCGGAAATGCAACCTGTTACCCTCGGCAACT | + |
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Preference number: 6 (lower is better) Translates to: SFSLTNKSPVLR*SRKCNLLPSAT Trigger: AGTTGCCGAGGGTAACAGGTTGCATTTCCGGCTCCACCGCAAGACTGGAGATTTGTTCGTCAAAGAGAAACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS CAA 72 bp | CGATCTAGTTTCTCTTTGACGAACAAATCTCCAGTCTaGCGGTGGAGCCGGAAATGCAACCTGTTACCCTCG | + |
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Preference number: 6 (lower is better) Translates to: RSSFSLTNKSPV*RWSRKCNLLPS Trigger: CGAGGGTAACAGGTTGCATTTCCGGCTCCACCGCAAGACTGGAGATTTGTTCGTCAAAGAGAAACTAGATCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS TCA 72 bp | ACAGATTGGGTGGTCCAGTATCCATGGCGACAAGGGTaGTATTATAGCTGGAGACATCCTCTCTATCCAAGC | + |
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Preference number: 6 (lower is better) Translates to: TDWVVQYPWRQG*YYSWRHPLYPS Trigger: GCTTGGATAGAGAGGATGTCTCCAGCTATAATATCACCCTTGTCGCCATGGATACTGGACCACCCAATCTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS TCA 72 bp | TTACATATACTCATCTCCTATCCGGTCATGGCCCGCTaGACCCCGAGACCGATTTTTATTAGAACCTGGAGG | + |
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Preference number: 6 (lower is better) Translates to: LHILISYPVMAR*TPRPIFIRTWR Trigger: CCTCCAGGTTCTAATAAAAATCGGTCTCGGGGTTCAGCGGGCCATGACCGGATAGGAGATGAGTATATGTAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS CAA 72 bp | TTCTGCAGTGGGTACAAGATCATTGGACGATTGTCATaGTCGTCCAGGACCACCACTCTGACAGTAACTTCG | + |
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Preference number: 6 (lower is better) Translates to: FCSGYKIIGRLS*SSRTTTLTVTS Trigger: CGAAGTTACTGTCAGAGTGGTGGTCCTGGACGACAATGACAATCGTCCAATGATCTTGTACCCACTGCAGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS GCA 72 bp | TTGATATCAAATACTCTGACTTCCACCCGGAAGGACTaGAGCGGCTCGGCCAGAATAATTTCAAAATGCAGC | + |
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Preference number: 6 (lower is better) Translates to: LISNTLTSTRKD*SGSARIISKCS Trigger: GCTGCATTTTGAAATTATTCTGGCCGAGCCGCTGCAGTCCTTCCGGGTGGAAGTCAGAGTATTTGATATCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS GCA 72 bp | CTTGGTACTAGGTCATTGCAGGGCAAAGTGCCATTCTaGAGTGGGTACAAGATCATTGGACGATTGTCATTG | + |
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Preference number: 6 (lower is better) Translates to: LGTRSLQGKVPF*SGYKIIGRLSL Trigger: CAATGACAATCGTCCAATGATCTTGTACCCACTGCAGAATGGCACTTTGCCCTGCAATGACCTAGTACCAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS GCA 72 bp | GTGGCTTTAAGAAGATGGTATGAAAGCCAAGAATTCTaGCCAGAGTCACCATCAACAGCTACTACTTTGGTC | + |
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Preference number: 6 (lower is better) Translates to: VALRRWYESQEF*PESPSTATTLV Trigger: GACCAAAGTAGTAGCTGTTGATGGTGACTCTGGGCAGAATTCTTGGCTTTCATACCATCTTCTTAAAGCCAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS CCA 72 bp | ACTTGGGCATTTTCACCCAAATCTAGATCCTCGGCGTaGACTTTGCCAATAAAAACTGCAGGACTGTTGTTT | + |
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Preference number: 6 (lower is better) Translates to: TWAFSPKSRSSA*TLPIKTAGLLF Trigger: AAACAACAGTCCTGCAGTTTTTATTGGCAAAGTCCACGCCGAGGATCTAGATTTGGGTGAAAATGCCCAAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS CAA 72 bp | AGAGGCTCTTTGTTTAGAAAAACTGGTGCATTGTCGTaGATATCAAATACTCTGACTTCCACCCGGAAGGAC | + |
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Preference number: 6 (lower is better) Translates to: RGSLFRKTGALS*ISNTLTSTRKD Trigger: GTCCTTCCGGGTGGAAGTCAGAGTATTTGATATCAACGACAATGCACCAGTTTTTCTAAACAAAGAGCCTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS CAA 90 bp | GAAATGACCAAATATTTTGTGGTTGGATTTACCTTTCTAGAATGCTaGGATGGATCCTGGAACTGCAAGTATGGCTCTGAAAAGCCATCT | + |
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Preference number: 6 (lower is better) Translates to: EMTKYFVVGFTFLEC*DGSWNCKYGSEKPS Trigger: AGATGGCTTTTCAGAGCCATACTTGCAGTTCCAGGATCCATCCAAGCATTCTAGAAAGGTAAATCCAACCACAAAATATTTGGTCATTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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| CDS CCA 72 bp | CTACAAACTGAAAGTCTTGAATGGCCTCATAATCCATaGTTCTTAGTGCATAGAGCTTTCCATTATCTGAGT | + |
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Preference number: 6 (lower is better) Translates to: LQTESLEWPHNP*FLVHRAFHYLS Trigger: ACTCAGATAATGGAAAGCTCTATGCACTAAGAACCATGGATTATGAGGCCATTCAAGACTTTCAGTTTGTAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052366.5 |
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