Pregenerated sensors for PCDHAC2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000102697Ensembl transcript IDs: ENSMUST00000047479.3
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AGCCCCAAGGCTCTGGCCACGTTGCCCACGAGCGCGCCGGGGCTCTaGTCCTCCGGCACGGAGTATCGTAGCTGGGAGGCCGCTGGGCCT | + |
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Preference number: 5 (lower is better) Translates to: SPKALATLPTSAPGL*SSGTEYRSWEAAGP Trigger: AGGCCCAGCGGCCTCCCAGCTACGATACTCCGTGCCGGAGGAGCAGAGCCCCGGCGCGCTCGTGGGCAACGTGGCCAGAGCCTTGGGGCT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS CCA 90 bp | GCAGACAGCCAGGTCCCAAGCGCCGCAGTTCTAGCCCCAAGGCTCTaGCCACGTTGCCCACGAGCGCGCCGGGGCTCTGCTCCTCCGGCA | + |
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Preference number: 5 (lower is better) Translates to: ADSQVPSAAVLAPRL*PRCPRARRGSAPPA Trigger: TGCCGGAGGAGCAGAGCCCCGGCGCGCTCGTGGGCAACGTGGCCAGAGCCTTGGGGCTAGAACTGCGGCGCTTGGGACCTGGCTGTCTGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS GCA 90 bp | CAGGTCCCAAGCGCCGCAGTTCTAGCCCCAAGGCTCTGGCCACGTTaGCCACGAGCGCGCCGGGGCTCTGCTCCTCCGGCACGGAGTATC | + |
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Preference number: 5 (lower is better) Translates to: QVPSAAVLAPRLWPR*PRARRGSAPPARSI Trigger: GATACTCCGTGCCGGAGGAGCAGAGCCCCGGCGCGCTCGTGGGCAACGTGGCCAGAGCCTTGGGGCTAGAACTGCGGCGCTTGGGACCTG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS TCA 90 bp | CGATCGCGCTCACTGCCACAGGGTTGTGAGCCAGCACTTCCAAGCTaGGCAGGCAGCGAGGCCGCTGCTCGCACAGCGCCTCGCGATCTA | + |
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Preference number: 5 (lower is better) Translates to: RSRSLPQGCEPALPS*AGSEAAARTAPRDL Trigger: TAGATCGCGAGGCGCTGTGCGAGCAGCGGCCTCGCTGCCTGCTCAGCTTGGAAGTGCTGGCTCACAACCCTGTGGCAGTGAGCGCGATCG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS TCA 90 bp | AGCGAGGCCGCTGCTCGCACAGCGCCTCGCGATCTATCCGCTCGTTaGCGAAGAGCGCTCCATTGGTCAAGTCCAGTTCCAGGTAGCGCG | + |
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Preference number: 5 (lower is better) Translates to: SEAAARTAPRDLSAR*RRALHWSSPVPGSA Trigger: CGCGCTACCTGGAACTGGACTTGACCAATGGAGCGCTCTTCGTCAACGAGCGGATAGATCGCGAGGCGCTGTGCGAGCAGCGGCCTCGCT 63% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS GCA 90 bp | GAGCGCTCCATTGGTCAAGTCCAGTTCCAGGTAGCGCGGGCTGGGTaGACCCAAATGGTTGATGCGCAGACAGCCAGGTCCCAAGCGCCG | + |
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Preference number: 5 (lower is better) Translates to: ERSIGQVQFQVARAG*TQMVDAQTARSQAP Trigger: CGGCGCTTGGGACCTGGCTGTCTGCGCATCAACCATTTGGGTGCACCCAGCCCGCGCTACCTGGAACTGGACTTGACCAATGGAGCGCTC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS TCA 90 bp | TCAAGTCCAGTTCCAGGTAGCGCGGGCTGGGTGCACCCAAATGGTTaGTGCGCAGACAGCCAGGTCCCAAGCGCCGCAGTTCTAGCCCCA | + |
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Preference number: 5 (lower is better) Translates to: SSPVPGSAGWVHPNG*CADSQVPSAAVLAP Trigger: TGGGGCTAGAACTGCGGCGCTTGGGACCTGGCTGTCTGCGCATCAACCATTTGGGTGCACCCAGCCCGCGCTACCTGGAACTGGACTTGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS TCA 90 bp | CCTGAAGCTGATAATCCGGCCGCGGGAAGCGCGGAGAGTTGTCATTaGTGTCCAGTATTTCCACCTCGATCGCGCTCACTGCCACAGGGT | + |
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Preference number: 5 (lower is better) Translates to: PEADNPAAGSAESCH*CPVFPPRSRSLPQG Trigger: ACCCTGTGGCAGTGAGCGCGATCGAGGTGGAAATACTGGACATCAATGACAACTCTCCGCGCTTCCCGCGGCCGGATTATCAGCTTCAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS TCA 90 bp | ATCCAGCTCAAAGTGCTCGCTGGGGCTGAGCTCGTAGGTCTGCACTaGGTTGGCACCGACGTCAGGGTCCTGTGCGCTCTCTATGTGAAA | + |
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Preference number: 5 (lower is better) Translates to: IQLKVLAGAELVGLH*VGTDVRVLCALYVK Trigger: TTTCACATAGAGAGCGCACAGGACCCTGACGTCGGTGCCAACTCAGTGCAGACCTACGAGCTCAGCCCCAGCGAGCACTTTGAGCTGGAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS TCA 90 bp | CCCTGTCTGGGCCCCTGTGTTGTAAAACATGAAAGTATCACTCCCTaGGCCTGCTGTCAGGCAGGCCTTGTAGCAGTAGGTCTTGGTGAG | + |
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Preference number: 5 (lower is better) Translates to: PCLGPCVVKHESITP*ACCQAGLVAVGLGE Trigger: CTCACCAAGACCTACTGCTACAAGGCCTGCCTGACAGCAGGCTCAGGGAGTGATACTTTCATGTTTTACAACACAGGGGCCCAGACAGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS GCA 90 bp | ACTTTGAGGCCATGTGGTATCCTGGCATCGATATTGTTATTGGCCTaGTTGTACAGCTCTGCAGGGCAGCGCTCCCTCACTCCACAGAAG | + |
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Preference number: 5 (lower is better) Translates to: TLRPCGILASILLLA*LYSSAGQRSLTPQK Trigger: CTTCTGTGGAGTGAGGGAGCGCTGCCCTGCAGAGCTGTACAAGCAGGCCAATAACAATATCGATGCCAGGATACCACATGGCCTCAAAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS TCA 90 bp | TTCCCCTGTAGTCACATCGATGCTGAAGAGCTGTCTCTCCCGGTCTaGTGTGTAGCTGCTCAAGGAGTACCTGAGTTCACCGTTAGAACC | + |
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Preference number: 5 (lower is better) Translates to: FPCSHIDAEELSLPV*CVAAQGVPEFTVRT Trigger: GGTTCTAACGGTGAACTCAGGTACTCCTTGAGCAGCTACACATCAGACCGGGAGAGACAGCTCTTCAGCATCGATGTGACTACAGGGGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS GCA 90 bp | TTTGTCAATTTGGTTGTTAGCAGGCTCCTGCCGGATGGAGATGATTaGAGGAGATCCTGGGATAATGAATTTGTCTGGCAACTCACCGGG | + |
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Preference number: 5 (lower is better) Translates to: FVNLVVSRLLPDGDD*RRSWDNEFVWQLTG Trigger: CCCGGTGAGTTGCCAGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTGCTAACAACCAAATTGACAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS CCA 90 bp | GGAGTGAGTAGGTCACCTCTGCATTCTCCTTTTGATCTGGGTCTGTaGCTTGCACAGTGCAGAGCAACACACCTGGTAAATTGTTTTCCT | + |
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Preference number: 5 (lower is better) Translates to: GVSRSPLHSPFDLGL*LAQCRATHLVNCFP Trigger: AGGAAAACAATTTACCAGGTGTGTTGCTCTGCACTGTGCAAGCCACAGACCCAGATCAAAAGGAGAATGCAGAGGTGACCTACTCACTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS TCA 90 bp | GGTGGATTGTCATTTATGTCAGAGATCTCAACCTGCAATGTCCTTTaGGATGTGAGTGGTGGTACTCCCCCATCAGTAGCTGTCACTGTG | + |
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Preference number: 5 (lower is better) Translates to: GGLSFMSEISTCNVL*DVSGGTPPSVAVTV Trigger: CACAGTGACAGCTACTGATGGGGGAGTACCACCACTCACATCTCAAAGGACATTGCAGGTTGAGATCTCTGACATAAATGACAATCCACC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS CCA 90 bp | ATTGCCTCGAACCTCAATGAAGTGAGGCTGTACTTTGAGGCCATGTaGTATCCTGGCATCGATATTGTTATTGGCCTGCTTGTACAGCTC | + |
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Preference number: 5 (lower is better) Translates to: IASNLNEVRLYFEAM*YPGIDIVIGLLVQL Trigger: GAGCTGTACAAGCAGGCCAATAACAATATCGATGCCAGGATACCACATGGCCTCAAAGTACAGCCTCACTTCATTGAGGTTCGAGGCAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS GCA 90 bp | AAGGTTATAAAATCGCTTTTGTCAATTTGGTTGTTAGCAGGCTCCTaGCGGATGGAGATGATTGCAGGAGATCCTGGGATAATGAATTTG | + |
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Preference number: 5 (lower is better) Translates to: KVIKSLLSIWLLAGS*RMEMIAGDPGIMNL Trigger: CAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTGCTAACAACCAAATTGACAAAAGCGATTTTATAACCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS CCA 90 bp | ATTGTTTTCCTCGATGTAGATGGAATAGGAGTCCTTCAGGAAGCTTaGTGGATTGTCATTTATGTCAGAGATCTCAACCTGCAATGTCCT | + |
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Preference number: 5 (lower is better) Translates to: IVFLDVDGIGVLQEA*WIVIYVRDLNLQCP Trigger: AGGACATTGCAGGTTGAGATCTCTGACATAAATGACAATCCACCAAGCTTCCTGAAGGACTCCTATTCCATCTACATCGAGGAAAACAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS GCA 72 bp | GCTCTGGCCACGTTGCCCACGAGCGCGCCGGGGCTCTaGTCCTCCGGCACGGAGTATCGTAGCTGGGAGGCC | + |
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Preference number: 6 (lower is better) Translates to: ALATLPTSAPGL*SSGTEYRSWEA Trigger: GGCCTCCCAGCTACGATACTCCGTGCCGGAGGAGCAGAGCCCCGGCGCGCTCGTGGGCAACGTGGCCAGAGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS CCA 72 bp | CCGGGGCTCTGCTCCTCCGGCACGGAGTATCGTAGCTaGGAGGCCGCTGGGCCTGGCAGCAGCACCAGCAGC | + |
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Preference number: 6 (lower is better) Translates to: PGLCSSGTEYRS*EAAGPGSSTSS Trigger: GCTGCTGGTGCTGCTGCCAGGCCCAGCGGCCTCCCAGCTACGATACTCCGTGCCGGAGGAGCAGAGCCCCGG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS CAA 72 bp | AAGCGCCGCAGTTCTAGCCCCAAGGCTCTGGCCACGTaGCCCACGAGCGCGCCGGGGCTCTGCTCCTCCGGC | + |
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Preference number: 6 (lower is better) Translates to: KRRSSSPKALAT*PTSAPGLCSSG Trigger: GCCGGAGGAGCAGAGCCCCGGCGCGCTCGTGGGCAACGTGGCCAGAGCCTTGGGGCTAGAACTGCGGCGCTT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS CAA 90 bp | CCAGGTCCCAAGCGCCGCAGTTCTAGCCCCAAGGCTCTGGCCACGTaGCCCACGAGCGCGCCGGGGCTCTGCTCCTCCGGCACGGAGTAT | + |
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Preference number: 6 (lower is better) Translates to: PGPKRRSSSPKALAT*PTSAPGLCSSGTEY Trigger: ATACTCCGTGCCGGAGGAGCAGAGCCCCGGCGCGCTCGTGGGCAACGTGGCCAGAGCCTTGGGGCTAGAACTGCGGCGCTTGGGACCTGG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS TCA 72 bp | TCACTGCCACAGGGTTGTGAGCCAGCACTTCCAAGCTaGGCAGGCAGCGAGGCCGCTGCTCGCACAGCGCCT | + |
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Preference number: 6 (lower is better) Translates to: SLPQGCEPALPS*AGSEAAARTAP Trigger: AGGCGCTGTGCGAGCAGCGGCCTCGCTGCCTGCTCAGCTTGGAAGTGCTGGCTCACAACCCTGTGGCAGTGA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS TCA 72 bp | GTTCCAGGTAGCGCGGGCTGGGTGCACCCAAATGGTTaGTGCGCAGACAGCCAGGTCCCAAGCGCCGCAGTT | + |
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Preference number: 6 (lower is better) Translates to: VPGSAGWVHPNG*CADSQVPSAAV Trigger: AACTGCGGCGCTTGGGACCTGGCTGTCTGCGCATCAACCATTTGGGTGCACCCAGCCCGCGCTACCTGGAAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS CAA 90 bp | ATCAGGTTCCCGGTACTGTGCCTACTTTGGCCGGTGAGTTGCCTGTaGTCAGTCACTGAGGCTTGGGCTCCCCCAGGCCCTGGCCCTGTC | + |
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Preference number: 6 (lower is better) Translates to: IRFPVLCLLWPVSCL*SVTEAWAPPGPGPV Trigger: GACAGGGCCAGGGCCTGGGGGAGCCCAAGCCTCAGTGACTGACAACAGGCAACTCACCGGCCAAAGTAGGCACAGTACCGGGAACCTGAT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS CAA 72 bp | CCGGTACTGTGCCTACTTTGGCCGGTGAGTTGCCTGTaGTCAGTCACTGAGGCTTGGGCTCCCCCAGGCCCT | + |
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Preference number: 6 (lower is better) Translates to: PVLCLLWPVSCL*SVTEAWAPPGP Trigger: AGGGCCTGGGGGAGCCCAAGCCTCAGTGACTGACAACAGGCAACTCACCGGCCAAAGTAGGCACAGTACCGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS TCA 72 bp | TTGGCACCGACGTCAGGGTCCTGTGCGCTCTCTATGTaGAACCGCGCTCCAGGTGCCACGGATTCGCTTACC | + |
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Preference number: 6 (lower is better) Translates to: LAPTSGSCALSM*NRAPGATDSLT Trigger: GGTAAGCGAATCCGTGGCACCTGGAGCGCGGTTTCACATAGAGAGCGCACAGGACCCTGACGTCGGTGCCAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS CAA 72 bp | CGCTGCTCGCACAGCGCCTCGCGATCTATCCGCTCGTaGACGAAGAGCGCTCCATTGGTCAAGTCCAGTTCC | + |
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Preference number: 6 (lower is better) Translates to: RCSHSASRSIRS*TKSAPLVKSSS Trigger: GGAACTGGACTTGACCAATGGAGCGCTCTTCGTCAACGAGCGGATAGATCGCGAGGCGCTGTGCGAGCAGCG 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS TCA 72 bp | GCTGCTCGCACAGCGCCTCGCGATCTATCCGCTCGTTaGCGAAGAGCGCTCCATTGGTCAAGTCCAGTTCCA | + |
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Preference number: 6 (lower is better) Translates to: AARTAPRDLSAR*RRALHWSSPVP Trigger: TGGAACTGGACTTGACCAATGGAGCGCTCTTCGTCAACGAGCGGATAGATCGCGAGGCGCTGTGCGAGCAGC 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS TCA 72 bp | GAATTGTCATTCGTGTCCAGGACACGAACGGCGATCTaGGCTGTGCCTGAGCGAGCTGGGATGCCCCCATCC | + |
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Preference number: 6 (lower is better) Translates to: ELSFVSRTRTAI*AVPERAGMPPS Trigger: GGATGGGGGCATCCCAGCTCGCTCAGGCACAGCTCAGATCGCCGTTCGTGTCCTGGACACGAATGACAATTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS GCA 72 bp | ATTGGTCAAGTCCAGTTCCAGGTAGCGCGGGCTGGGTaGACCCAAATGGTTGATGCGCAGACAGCCAGGTCC | + |
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Preference number: 6 (lower is better) Translates to: IGQVQFQVARAG*TQMVDAQTARS Trigger: GGACCTGGCTGTCTGCGCATCAACCATTTGGGTGCACCCAGCCCGCGCTACCTGGAACTGGACTTGACCAAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS CCA 72 bp | CTGCTCTTAGCGAGGCAGAGTAGCGCCAGTCAGGGTTaGGCTGCCGGGGCTCATTTTGAGAGCCAGCATCAT | + |
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Preference number: 6 (lower is better) Translates to: LLLARQSSASQG*AAGAHFESQHH Trigger: ATGATGCTGGCTCTCAAAATGAGCCCCGGCAGCCCAACCCTGACTGGCGCTACTCTGCCTCGCTAAGAGCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS TCA 72 bp | GCCCTGGCCCTGTCTGGGCCCCTGTGTTGTAAAACATaGAAGTATCACTCCCTGAGCCTGCTGTCAGGCAGG | + |
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Preference number: 6 (lower is better) Translates to: ALALSGPLCCKT*KYHSLSLLSGR Trigger: CCTGCCTGACAGCAGGCTCAGGGAGTGATACTTTCATGTTTTACAACACAGGGGCCCAGACAGGGCCAGGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS GCA 72 bp | CATTCACGTCCACCACATACACGTTGGCGGTCACAGTaGTGCTTAGTGGTGGCCTCCCCTTATCCTGGGCCT | + |
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Preference number: 6 (lower is better) Translates to: HSRPPHTRWRSQ*CLVVASPYPGP Trigger: AGGCCCAGGATAAGGGGAGGCCACCACTAAGCAGCACTGTGACCGCCAACGTGTATGTGGTGGACGTGAATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS CAA 90 bp | TGTGCCCGGAGGAGCATCCTCTCGCAGCTGGACGCGGTAAGTGGATaGGTCAAAGGCAGGAGAATTGTCATTCGTGTCCAGGACACGAAC | + |
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Preference number: 6 (lower is better) Translates to: CARRSILSQLDAVSG*VKGRRIVIRVQDTN Trigger: GTTCGTGTCCTGGACACGAATGACAATTCTCCTGCCTTTGACCAATCCACTTACCGCGTCCAGCTGCGAGAGGATGCTCCTCCGGGCACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS CAA 72 bp | GTGTCCCGCCATGGGTACCGGTCCCCGGTCAGTAGCTaGCACATAGATCTGGTAGGAGGAAGACTCCTCATA | + |
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Preference number: 6 (lower is better) Translates to: VSRHGYRSPVSS*HIDLVGGRLLI Trigger: TATGAGGAGTCTTCCTCCTACCAGATCTATGTGCAAGCTACTGACCGGGGACCGGTACCCATGGCGGGACAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS CAA 72 bp | GTGATGGCCACGGTAGCTGATAGAGGTGGCTCTCCATaGTCACGGACCACCACGGTCAGGTTGAAAGTGGTG | + |
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Preference number: 6 (lower is better) Translates to: VMATVADRGGSP*SRTTTVRLKVV Trigger: CACCACTTTCAACCTGACCGTGGTGGTCCGTGACAATGGAGAGCCACCTCTATCAGCTACCGTGGCCATCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS CAA 90 bp | CACCTTGCAGTGTCCCGCCATGGGTACCGGTCCCCGGTCAGTAGCTaGCACATAGATCTGGTAGGAGGAAGACTCCTCATAATCCAGAGT | + |
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Preference number: 6 (lower is better) Translates to: HLAVSRHGYRSPVSS*HIDLVGGRLLIIQS Trigger: ACTCTGGATTATGAGGAGTCTTCCTCCTACCAGATCTATGTGCAAGCTACTGACCGGGGACCGGTACCCATGGCGGGACACTGCAAGGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS CAA 90 bp | ACAGCTACTGTGATGGCCACGGTAGCTGATAGAGGTGGCTCTCCATaGTCACGGACCACCACGGTCAGGTTGAAAGTGGTGCCACTCTCA | + |
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Preference number: 6 (lower is better) Translates to: TATVMATVADRGGSP*SRTTTVRLKVVPLS Trigger: TGAGAGTGGCACCACTTTCAACCTGACCGTGGTGGTCCGTGACAATGGAGAGCCACCTCTATCAGCTACCGTGGCCATCACAGTAGCTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS CAA 90 bp | TTGAGGCCATGTGGTATCCTGGCATCGATATTGTTATTGGCCTGCTaGTACAGCTCTGCAGGGCAGCGCTCCCTCACTCCACAGAAGCCC | + |
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Preference number: 6 (lower is better) Translates to: LRPCGILASILLLAC*YSSAGQRSLTPQKP Trigger: GGGCTTCTGTGGAGTGAGGGAGCGCTGCCCTGCAGAGCTGTACAAGCAGGCCAATAACAATATCGATGCCAGGATACCACATGGCCTCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS CCA 72 bp | CCGGAGGAGCATCCTCTCGCAGCTGGACGCGGTAAGTaGATTGGTCAAAGGCAGGAGAATTGTCATTCGTGT | + |
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Preference number: 6 (lower is better) Translates to: PEEHPLAAGRGK*IGQRQENCHSC Trigger: ACACGAATGACAATTCTCCTGCCTTTGACCAATCCACTTACCGCGTCCAGCTGCGAGAGGATGCTCCTCCGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS CCA 72 bp | TGGCAACTCACCGGGACCGGACTGTTTGGGGTTGCCTaGTCCGTATTTAAAGGTCCAGCTGTTGCTGTTGAC | + |
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Preference number: 6 (lower is better) Translates to: WQLTGTGLFGVA*SVFKGPAVAVD Trigger: GTCAACAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAGTCCGGTCCCGGTGAGTTGCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS CAA 90 bp | GGCTGTACTTTGAGGCCATGTGGTATCCTGGCATCGATATTGTTATaGGCCTGCTTGTACAGCTCTGCAGGGCAGCGCTCCCTCACTCCA | + |
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Preference number: 6 (lower is better) Translates to: GCTLRPCGILASILL*ACLYSSAGQRSLTP Trigger: TGGAGTGAGGGAGCGCTGCCCTGCAGAGCTGTACAAGCAGGCCAATAACAATATCGATGCCAGGATACCACATGGCCTCAAAGTACAGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS GCA 72 bp | CCATGTGGTATCCTGGCATCGATATTGTTATTGGCCTaGTTGTACAGCTCTGCAGGGCAGCGCTCCCTCACT | + |
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Preference number: 6 (lower is better) Translates to: PCGILASILLLA*LYSSAGQRSLT Trigger: AGTGAGGGAGCGCTGCCCTGCAGAGCTGTACAAGCAGGCCAATAACAATATCGATGCCAGGATACCACATGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS CCA 72 bp | TGTGATGTTGTAGGCAGCTACCCGCTCCCGATCCAATaGGCCACTCACCACCAGGGTATAGGAGTTTCCAAA | + |
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Preference number: 6 (lower is better) Translates to: CDVVGSYPLPIQ*ATHHQGIGVSK Trigger: TTTGGAAACTCCTATACCCTGGTGGTGAGTGGCCCATTGGATCGGGAGCGGGTAGCTGCCTACAACATCACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS CCA 72 bp | AGGCTCCTGCCGGATGGAGATGATTGCAGGAGATCCTaGGATAATGAATTTGTCTGGCAACTCACCGGGACC | + |
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Preference number: 6 (lower is better) Translates to: RLLPDGDDCRRS*DNEFVWQLTGT Trigger: GGTCCCGGTGAGTTGCCAGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS CAA 72 bp | AGGAGCATCCTCTCGCAGCTGGACGCGGTAAGTGGATaGGTCAAAGGCAGGAGAATTGTCATTCGTGTCCAG | + |
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Preference number: 6 (lower is better) Translates to: RSILSQLDAVSG*VKGRRIVIRVQ Trigger: CTGGACACGAATGACAATTCTCCTGCCTTTGACCAATCCACTTACCGCGTCCAGCTGCGAGAGGATGCTCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS CAA 72 bp | TGTGGTATCCTGGCATCGATATTGTTATTGGCCTGCTaGTACAGCTCTGCAGGGCAGCGCTCCCTCACTCCA | + |
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Preference number: 6 (lower is better) Translates to: CGILASILLLAC*YSSAGQRSLTP Trigger: TGGAGTGAGGGAGCGCTGCCCTGCAGAGCTGTACAAGCAGGCCAATAACAATATCGATGCCAGGATACCACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS CAA 72 bp | TTGAGGCCATGTGGTATCCTGGCATCGATATTGTTATaGGCCTGCTTGTACAGCTCTGCAGGGCAGCGCTCC | + |
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Preference number: 6 (lower is better) Translates to: LRPCGILASILL*ACLYSSAGQRS Trigger: GGAGCGCTGCCCTGCAGAGCTGTACAAGCAGGCCAATAACAATATCGATGCCAGGATACCACATGGCCTCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS TCA 72 bp | AGTCACATCGATGCTGAAGAGCTGTCTCTCCCGGTCTaGTGTGTAGCTGCTCAAGGAGTACCTGAGTTCACC | + |
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Preference number: 6 (lower is better) Translates to: SHIDAEELSLPV*CVAAQGVPEFT Trigger: GGTGAACTCAGGTACTCCTTGAGCAGCTACACATCAGACCGGGAGAGACAGCTCTTCAGCATCGATGTGACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS TCA 72 bp | ATAGGAGTTTCCAAAGCCATTCAGCCGGAAGGGCAGTaGAGCCTCCAGACCCAGGCTTACTTTCCTGTTGGA | + |
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Preference number: 6 (lower is better) Translates to: IGVSKAIQPEGQ*SLQTQAYFPVG Trigger: TCCAACAGGAAAGTAAGCCTGGGTCTGGAGGCTTCACTGCCCTTCCGGCTGAATGGCTTTGGAAACTCCTAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS CCA 72 bp | GATGATTGCAGGAGATCCTGGGATAATGAATTTGTCTaGCAACTCACCGGGACCGGACTGTTTGGGGTTGCC | + |
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Preference number: 6 (lower is better) Translates to: DDCRRSWDNEFV*QLTGTGLFGVA Trigger: GGCAACCCCAAACAGTCCGGTCCCGGTGAGTTGCCAGACAAATTCATTATCCCAGGATCTCCTGCAATCATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS CCA 72 bp | TTTAGGATAATCAGGTTCCCGGTACTGTGCCTACTTTaGCCGGTGAGTTGCCTGTTGTCAGTCACTGAGGCT | + |
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Preference number: 6 (lower is better) Translates to: FRIIRFPVLCLL*PVSCLLSVTEA Trigger: AGCCTCAGTGACTGACAACAGGCAACTCACCGGCCAAAGTAGGCACAGTACCGGGAACCTGATTATCCTAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS CAA 72 bp | TGTACTTTGAGGCCATGTGGTATCCTGGCATCGATATaGTTATTGGCCTGCTTGTACAGCTCTGCAGGGCAG | + |
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Preference number: 6 (lower is better) Translates to: CTLRPCGILASI*LLACLYSSAGQ Trigger: CTGCCCTGCAGAGCTGTACAAGCAGGCCAATAACAATATCGATGCCAGGATACCACATGGCCTCAAAGTACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS TCA 72 bp | ATCTCAGAGTATGTCCGAGGACTCTTTATATGTCTCTaGGTGTCAGGGAGCATTTTAGAAACCCTGTCCACC | + |
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Preference number: 6 (lower is better) Translates to: ISEYVRGLFICL*VSGSILETLST Trigger: GGTGGACAGGGTTTCTAAAATGCTCCCTGACACTCAGAGACATATAAAGAGTCCTCGGACATACTCTGAGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS CCA 72 bp | AACCTCAATGAAGTGAGGCTGTACTTTGAGGCCATGTaGTATCCTGGCATCGATATTGTTATTGGCCTGCTT | + |
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Preference number: 6 (lower is better) Translates to: NLNEVRLYFEAM*YPGIDIVIGLL Trigger: AAGCAGGCCAATAACAATATCGATGCCAGGATACCACATGGCCTCAAAGTACAGCCTCACTTCATTGAGGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS CCA 72 bp | CTCGATGTAGATGGAATAGGAGTCCTTCAGGAAGCTTaGTGGATTGTCATTTATGTCAGAGATCTCAACCTG | + |
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Preference number: 6 (lower is better) Translates to: LDVDGIGVLQEA*WIVIYVRDLNL Trigger: CAGGTTGAGATCTCTGACATAAATGACAATCCACCAAGCTTCCTGAAGGACTCCTATTCCATCTACATCGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS CAA 72 bp | CCTCGATGTAGATGGAATAGGAGTCCTTCAGGAAGCTaGGTGGATTGTCATTTATGTCAGAGATCTCAACCT | + |
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Preference number: 6 (lower is better) Translates to: PRCRWNRSPSGS*VDCHLCQRSQP Trigger: AGGTTGAGATCTCTGACATAAATGACAATCCACCAAGCTTCCTGAAGGACTCCTATTCCATCTACATCGAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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| CDS CAA 90 bp | AATTGTTTTCCTCGATGTAGATGGAATAGGAGTCCTTCAGGAAGCTaGGTGGATTGTCATTTATGTCAGAGATCTCAACCTGCAATGTCC | + |
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Preference number: 6 (lower is better) Translates to: NCFPRCRWNRSPSGS*VDCHLCQRSQPAMS Trigger: GGACATTGCAGGTTGAGATCTCTGACATAAATGACAATCCACCAAGCTTCCTGAAGGACTCCTATTCCATCTACATCGAGGAAAACAATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047479.3 |
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